Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397577.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1528.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6439
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.34

Warning! 129 characters in sequence are not A, C, G, or T


Found at i:3925 original size:28 final size:28

Alignment explanation


    Indices: 3886--3944  Score: 75
    Period size: 28  Copynumber: 2.1  Consensus size: 28

       3876 TATTATTTAT

                               *         
       3886 ATTATTAATTAA-TAAAATTAAAATATTA
          1 ATTATTAATTAATTAAAATAAAAATA-TA

                   *       *            
       3914 ATTATTATTTAATTACAATAAAAATATA
          1 ATTATTAATTAATTAAAATAAAAATATA

               
       3942 ATT
          1 ATT

       3945 TTCCTAAACA


Statistics
Matches: 27,  Mismatches: 3, Indels: 2
        0.84            0.09        0.06

Matches are distributed among these distances:
  28   16  0.59
  29   11  0.41

ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44


Consensus pattern (28 bp):   
ATTATTAATTAATTAAAATAAAAATATA
Done.