Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400493.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3689.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 982

Length: 1637
ACGTcount: A:0.24, C:0.09, G:0.08, T:0.23

Warning! 590 characters in sequence are not A, C, G, or T


Found at i:1596 original size:172 final size:171

Alignment explanation


    Indices: 1118--1637  Score: 470
    Period size: 172  Copynumber: 3.0  Consensus size: 171

       1108 NNNNNNNNNN

                                                        *      **   *        
       1118 AATTGATTTAAATTTGAAT-TCTTTGTACATTTTT-CGTTAAAACAGACTAGGATTAAATG-TCT
          1 AATTGATTTAAATTTGAATGT-TTTGTACATTTTTAC-TTAAAATAGACTAAAATTGAATGCT-T

               * *              *              *          *                  
       1180 ACCTTCAGAAACATGAAGAAGAAAGTATTCATTGGTAAGAAAAGTCCATTTATAGTCACTCATTG
         63 ACCATGAGAAACATGAAGAAAAAAGTATTCATTGGCAAGAAAAGTCTATTTATAGTCACTCATTG

                  *          *   *      *********        
       1245 CTTCAAGAGCCTTATTACTCAGTTTAANNNNNNNNNNAATCTCAA
        128 CTTCAAAAGCCTTATTAATCACTTTAA-TAGTTTTATAATCTCAA

                             *        *       **             *               
       1290 AATTGATTTAAATTTGAGTGTTTTGTGCATTTTTGGTTAAAATAGACTAGAATTGAATGCTTACC
          1 AATTGATTTAAATTTGAATGTTTTGTACATTTTTACTTAAAATAGACTAAAATTGAATGCTTACC

                                                             **************  
       1355 ATGAGAAACATGAAGAAAAAAGTATTCATTGGCAAGAAAAGTCTATTTANNNNNNNNNNNNNNTT
         66 ATGAGAAACATGAAGAAAAAAGTATTCATTGGCAAGAAAAGTCTATTTATAGTCACTCATTGCTT

                             **                       
       1420 CAAAAGCCTTATTAATCTTTTTACATAGTTTTATAATCTCAA
        131 CAAAAGCCTTATTAATCACTTTA-ATAGTTTTATAATCTCAA

                                                  *                    ******
       1462 AATTGATTTAAATTTGAATGTTTTGTACATTTTTACTTCAAATAGACTAAAATTGAATGNNNNNN
          1 AATTGATTTAAATTTGAATGTTTTGTACATTTTTACTTAAAATAGACTAAAATTGAATGCTTACC

            ****                                           *                 
       1527 NNNNGAAACATGAAGAAAAAAGTATTCATTGGCAAGAAAAGTCTATTGATAGTCACTCATTGCTT
         66 ATGAGAAACATGAAGAAAAAAGTATTCATTGGCAAGAAAAGTCTATTTATAGTCACTCATTGCTT

                    *                                 
       1592 CAAAAGCCATATTAATCACTTTAAATAGTTTTATAATCTCAA
        131 CAAAAGCCTTATTAATCACTTT-AATAGTTTTATAATCTCAA

                
       1634 AATT
          1 AATT


Statistics
Matches: 271,  Mismatches: 72, Indels: 10
        0.77            0.20        0.03

Matches are distributed among these distances:
 172  267  0.99
 173    4  0.01

ACGTcount: A:0.36, C:0.11, G:0.12, T:0.34


Consensus pattern (171 bp):   
AATTGATTTAAATTTGAATGTTTTGTACATTTTTACTTAAAATAGACTAAAATTGAATGCTTACC
ATGAGAAACATGAAGAAAAAAGTATTCATTGGCAAGAAAAGTCTATTTATAGTCACTCATTGCTT
CAAAAGCCTTATTAATCACTTTAATAGTTTTATAATCTCAA
Done.