Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400504.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3699.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2156
ACGTcount: A:0.22, C:0.08, G:0.07, T:0.22

Warning! 895 characters in sequence are not A, C, G, or T


Found at i:1851 original size:171 final size:171

Alignment explanation


    Indices: 1548--1866  Score: 386
    Period size: 171  Copynumber: 1.9  Consensus size: 171

       1538 NNTTAATTTT

                                    *             *            *             
       1548 TTTTACATTTTTAGTTAAAACAGATTATAATTGAATATTTACCTTAAGAAATATGAAGAAAAAGG
          1 TTTTACATTTTTAGTTAAAACAGACTATAATTGAATATCTACCTTAAGAAACATGAAGAAAAAGG

                   *                    *           *       ********** **    
       1613 CATTCATTGGAAAGAAAACTCCATTTATGGTCACCCATTCTTTCAAAANNNNNNNNNNTTGCTTT
         66 CATTCATAGGAAAGAAAACTCCATTTATAGTCACCCATTCCTTCAAAACTCTTATTACTCACTTT

                                                     
       1678 AAATAGTTTTATAATCTCCTAAGTCATTTTAAGTTGAATTA
        131 AAATAGTTTTATAATCTCCTAAGTCATTTTAAGTTGAATTA

                               **               *        *    *              
       1719 TTTTACATTTTTAGTTAAAGTAGACTATAATTGAATGTCTACCTTGAGAAGCATGAAGAAAAAGG
          1 TTTTACATTTTTAGTTAAAACAGACTATAATTGAATATCTACCTTAAGAAACATGAAGAAAAAGG

                      *       * *           *                                
       1784 CATTCATAGGCAAGAAAAGTTCATTTATAGTCTCCCATTCCTTCAAAACTCTTATTACTCACTTT
         66 CATTCATAGGAAAGAAAACTCCATTTATAGTCACCCATTCCTTCAAAACTCTTATTACTCACTTT

                *             
       1849 AAATGGTTTTATAATCTC
        131 AAATAGTTTTATAATCTC

       1867 AAAATTNNNN


Statistics
Matches: 120,  Mismatches: 28, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
 171  120  1.00

ACGTcount: A:0.35, C:0.14, G:0.12, T:0.36


Consensus pattern (171 bp):   
TTTTACATTTTTAGTTAAAACAGACTATAATTGAATATCTACCTTAAGAAACATGAAGAAAAAGG
CATTCATAGGAAAGAAAACTCCATTTATAGTCACCCATTCCTTCAAAACTCTTATTACTCACTTT
AAATAGTTTTATAATCTCCTAAGTCATTTTAAGTTGAATTA
Done.