Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400510.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3705.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1721
ACGTcount: A:0.25, C:0.09, G:0.09, T:0.27

Warning! 517 characters in sequence are not A, C, G, or T


Found at i:632 original size:171 final size:161

Alignment explanation


    Indices: 455--770  Score: 318
    Period size: 171  Copynumber: 1.9  Consensus size: 161

        445 NNNNNNNNNN

                          *                           *          *           
        455 TTTTAAGTTG-AATTTTTTAATATTTTTTG-TTAAAACAGACTATAATTGAATCTCTACCTCGAG
          1 TTTTAAGTTGAAATCTTTT-ATA-TTTTTGATTAAAACAGACAATAATTGAATATCTACCTCGAG

                                         *         *                   *     
        518 AAA-AGTGAAGAAACAAG-CATTCATTGATAAGAAAAGTGCATTTAAAGTCACCCATTCTTTCAA
         64 AAACA-TGAAGAAA-AAGCCATTCATTGAGAAGAAAAGTCCATTTAAAGTCACCCATTCCTTC-A

                         *                                
        581 AAAG-CTTATTACTCGCTTTAAANNNNNNNNNNATCTCATAATTGA
        126 AAAGCCTTATTACCCGCTTTAAA----------ATCTCATAATTGA

                                                                    *  * *   
        626 TTTTAAGTTGAAATCTTTTATATTTTTGATTAAAACAGACAATAATTGAATATCTATCTTGGGAA
          1 TTTTAAGTTGAAATCTTTTATATTTTTGATTAAAACAGACAATAATTGAATATCTACCTCGAGAA

                 *                  *  *              *      **              
        691 ACATGCAGAAAAAGCCATTCATTGGGAGGAAAAGTCCATTTATAGTCACTTATTCCTTCAAAAGC
         66 ACATGAAGAAAAAGCCATTCATTGAGAAGAAAAGTCCATTTAAAGTCACCCATTCCTTCAAAAGC

                           
        756 CTTATTACCCGCTTT
        131 CTTATTACCCGCTTT

        771 TACTTGTTTT


Statistics
Matches: 124,  Mismatches: 16, Indels: 10
        0.83            0.11        0.07

Matches are distributed among these distances:
 170   14  0.11
 171  102  0.82
 172    8  0.06

ACGTcount: A:0.35, C:0.15, G:0.12, T:0.35


Consensus pattern (161 bp):   
TTTTAAGTTGAAATCTTTTATATTTTTGATTAAAACAGACAATAATTGAATATCTACCTCGAGAA
ACATGAAGAAAAAGCCATTCATTGAGAAGAAAAGTCCATTTAAAGTCACCCATTCCTTCAAAAGC
CTTATTACCCGCTTTAAAATCTCATAATTGA
Done.