Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397579.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3199.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6149
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33


Found at i:2033 original size:2 final size:2

Alignment explanation


    Indices: 2026--2057  Score: 55
    Period size: 2  Copynumber: 16.0  Consensus size: 2

       2016 CATATAAATT

                                              *            
       2026 TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       2058 CAGCATGCAG


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50


Consensus pattern (2 bp):   
TA

Done.