Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400517.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3712.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2751
ACGTcount: A:0.30, C:0.08, G:0.17, T:0.26

Warning! 534 characters in sequence are not A, C, G, or T


Found at i:2378 original size:18 final size:20

Alignment explanation


    Indices: 2355--2398  Score: 65
    Period size: 20  Copynumber: 2.3  Consensus size: 20

       2345 GTGCAGAAAG

                                
       2355 AATATT-TT-TAAATAAAAT
          1 AATATTGTTATAAATAAAAT

                       *        
       2373 AATATTGTTATGAATAAAAT
          1 AATATTGTTATAAATAAAAT

                  
       2393 AATATT
          1 AATATT

       2399 AAAATATGAA


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  18    6  0.26
  19    2  0.09
  20   15  0.65

ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43


Consensus pattern (20 bp):   
AATATTGTTATAAATAAAAT
Done.