Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400518.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3713.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 722

Length: 1204
ACGTcount: A:0.26, C:0.08, G:0.11, T:0.23

Warning! 383 characters in sequence are not A, C, G, or T


Found at i:286 original size:171 final size:171

Alignment explanation


    Indices: 108--676  Score: 567
    Period size: 171  Copynumber: 3.3  Consensus size: 171

         98 NNNNNNNNNG

                                    *      * *                               
        108 AACTTAAAATCAATTATGAGATTATAAAACTGTAGAAAGTGAGTAATAAGGCTTTCGAAGGCATG
          1 AACTTAAAATCAATTATGAGATTACAAAACTATTGAAAGTGAGTAATAAGGCTTTCGAAGGCATG

                             *       *       *  *          *        *        
        173 AGTGACTATAAATGGACATTTCTTATCAATGAATGACTTTTTCTTCACGTTTCCTATGG-AAGAC
         66 AGTGACTATAAATGGACTTTTCTTACCAATGAACGAGTTTTTCTTCATGTTTCCTAAGGTAAGAC

                               *                       
        237 ACTCAATTATAATTTGTTTCAACAAAAAATGTAAAAAA-ATTC
        131 A-TCAATTATAATTTGTTTTAAC-AAAAATGTAAAAAACATTC

                            *       *********                              * 
        279 AACTTAAAATCAATTACGAGATTNNNNNNNNNNTT-AAAGTGAGTAATAAGGCTTTCGAAGGCTT
          1 AACTTAAAATCAATTATGAGATT-ACAAAACTATTGAAAGTGAGTAATAAGGCTTTCGAAGGCAT

             *           *   *        *                                      
        343 GGGTGACTATAAACGG-GTTGTTCTTGCCAATGAACGAGTTTTTCTTCATGTTTCCTAAGGTAA-
         65 GAGTGACTATAAATGGACTT-TTCTTACCAATGAACGAGTTTTTCTTCATGTTTCCTAAGGTAAG

                       *    *            *            *  
        406 ACATTCAATTACAATTGGTTTTAATCAAATATGTAAAAAACAATC
        129 ACA-TCAATTATAATTTGTTTTAA-CAAAAATGTAAAAAACATTC

                                   *          *         *********         *  
        451 AACTTAAAATCAATTATGAGATTCCAAAACTATTTAAAGTGAGNNNNNNNNNNTTT-GAAGGAAT
          1 AACTTAAAATCAATTATGAGATTACAAAACTATTGAAAGTGAG-TAATAAGGCTTTCGAAGGCAT

                          *                     *       *                    
        515 GAGTGACTATAAATAGACTTTTCTTACCAATGAACGGGTTTTTCATCATGTTTCCTAAGGTAAG-
         65 GAGTGACTATAAATGGACTTTTCTTACCAATGAACGAGTTTTTCTTCATGTTTCCTAAGGTAAGA

                         *                *           *
        579 CATCAATTATAATGTGTTTTAACTAAAAATCTAAAAAACATTA
        130 CATCAATTATAATTTGTTTTAAC-AAAAATGTAAAAAACATTC

                      *                   *              *         
        622 AACTTAAAATTAATTATGAGATTACAAAACCATTGAAAGTGAGTAGTAAGGCTTT
          1 AACTTAAAATCAATTATGAGATTACAAAACTATTGAAAGTGAGTAATAAGGCTTT

        677 TGAATGAATG


Statistics
Matches: 312,  Mismatches: 76, Indels: 21
        0.76            0.19        0.05

Matches are distributed among these distances:
 170    5  0.02
 171  204  0.65
 172   98  0.31
 173    5  0.02

ACGTcount: A:0.37, C:0.12, G:0.15, T:0.32


Consensus pattern (171 bp):   
AACTTAAAATCAATTATGAGATTACAAAACTATTGAAAGTGAGTAATAAGGCTTTCGAAGGCATG
AGTGACTATAAATGGACTTTTCTTACCAATGAACGAGTTTTTCTTCATGTTTCCTAAGGTAAGAC
ATCAATTATAATTTGTTTTAACAAAAATGTAAAAAACATTC
Done.