Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400530.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3725.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4960
ACGTcount: A:0.19, C:0.06, G:0.06, T:0.20

Warning! 2404 characters in sequence are not A, C, G, or T


Found at i:4893 original size:173 final size:169

Alignment explanation


    Indices: 4533--4960  Score: 466
    Period size: 173  Copynumber: 2.5  Consensus size: 169

       4523 NNNNNNNNNN

                             *     *         *  *  *      *                * 
       4533 TTTAAAGCGAGTAATAAGGCTTTCGAAGGCTTGAGTTACAATAAATAGACTTTCCTTACCAATTG
          1 TTTAAAGCGAGTAATAAAGCTTTTGAAGGCTTGGGTGACTATAAATGGACTTT-CTTACCAATGG

                                 *     * *   *                    *          
       4598 ATATCTTTTTCTTCACGTTTCTAGACGTACACATTCAGTTATAATCTGTTTTAAGAAAAAATAAA
         65 ATATCTTTTTCTTCACGTTTCCAGACGGAAACAATCAGTTATAATCTGTTTTAAAAAAAAATAAA

                                                    
       4663 AAAAATTCAAACTAAAATCAATTCTGAGGTTATAAATTCA
        130 AAAAATTCAAACTAAAATCAATTCTGAGGTTATAAATTCA

                    *                     *                           *      
       4703 TTTAAAGCAAGTAATAAAGCTTTTGAAGGCATGGGTGACTATAAATGGACATTTCTTAGCAATGG
          1 TTTAAAGCGAGTAATAAAGCTTTTGAAGGCTTGGGTGACTATAAATGGAC-TTTCTTACCAATGG

            *                         *                                      
       4768 TTATCTTTTTCTTCACGTTTCCCA-AGGGAAACAATC-GATTATAATCTGTTTTAATAAAAAAAT
         65 ATATCTTTTTCTTCACGTTT-CCAGACGGAAACAATCAG-TTATAATCTGTTTTAA-AAAAAAAT

                        *   *                  ********** 
       4831 ATAACAAAAATTTAAATTAAAATCAATTAC-GAGGNNNNNNNNNNA
        127 A-AA-AAAAATTCAAACTAAAATCAATT-CTGAGGTTATAAATTCA

                              *         *                                    
       4876 TTTAAAGCGAGTAATAAAACTTTTGAAGTCTTGGGTGACTATAAATGGACTTTTCTTACCAATGG
          1 TTTAAAGCGAGTAATAAAGCTTTTGAAGGCTTGGGTGACTATAAATGGAC-TTTCTTACCAATGG

                *               
       4941 ATATATTTTTCTTCACGTTT
         65 ATATCTTTTTCTTCACGTTT


Statistics
Matches: 214,  Mismatches: 37, Indels: 11
        0.82            0.14        0.04

Matches are distributed among these distances:
 169    1  0.00
 170   94  0.44
 171   13  0.06
 172    2  0.01
 173  103  0.48
 174    1  0.00

ACGTcount: A:0.36, C:0.13, G:0.14, T:0.35


Consensus pattern (169 bp):   
TTTAAAGCGAGTAATAAAGCTTTTGAAGGCTTGGGTGACTATAAATGGACTTTCTTACCAATGGA
TATCTTTTTCTTCACGTTTCCAGACGGAAACAATCAGTTATAATCTGTTTTAAAAAAAAATAAAA
AAAATTCAAACTAAAATCAATTCTGAGGTTATAAATTCA
Done.