Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400534.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3729.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2242
ACGTcount: A:0.29, C:0.08, G:0.10, T:0.25

Warning! 639 characters in sequence are not A, C, G, or T


Found at i:830 original size:52 final size:53

Alignment explanation


    Indices: 761--864  Score: 165
    Period size: 53  Copynumber: 2.0  Consensus size: 53

        751 NNNNAAAACT

                   *                  *                          
        761 ATTTAAAGCGAGCAATAAGC-TTTTTGAAGGAATGAGTGACTCTAAATGGACA
          1 ATTTAAACCGAGCAATAAGCTTTTTTAAAGGAATGAGTGACTCTAAATGGACA

                        *                             *         
        813 ATTTAAACCGAGTAATAAGCTTTTTTAAAGGAATGAGTGACTTTAAATGGAC
          1 ATTTAAACCGAGCAATAAGCTTTTTTAAAGGAATGAGTGACTCTAAATGGAC

        865 TTTTTTACAC


Statistics
Matches: 47,  Mismatches: 4, Indels: 1
        0.90            0.08        0.02

Matches are distributed among these distances:
  52   18  0.38
  53   29  0.62

ACGTcount: A:0.38, C:0.11, G:0.21, T:0.30


Consensus pattern (53 bp):   
ATTTAAACCGAGCAATAAGCTTTTTTAAAGGAATGAGTGACTCTAAATGGACA

Done.