Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400562.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3754.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2592
ACGTcount: A:0.23, C:0.10, G:0.12, T:0.28

Warning! 701 characters in sequence are not A, C, G, or T


Found at i:1241 original size:58 final size:58

Alignment explanation


    Indices: 1146--1266  Score: 172
    Period size: 58  Copynumber: 2.1  Consensus size: 58

       1136 GATCTTCGTT

                                                                      
       1146 TTCAAGGGTCTTCACGACTTAATCTTGATCAGAAACTTTGTTGCCGCTTAATATTCGC
          1 TTCAAGGGTCTTCACGACTTAATCTTGATCAGAAACTTTGTTGCCGCTTAATATTCGC

                          *     *                         *   *  *  *  
       1204 TTCAAGGGTCTTCATGACTTGATCTTGATCACG-AACTTTGTTGCCTCTTGATCTTTGC
          1 TTCAAGGGTCTTCACGACTTAATCTTGATCA-GAAACTTTGTTGCCGCTTAATATTCGC

                 
       1262 TTCAA
          1 TTCAA

       1267 AAATCTTCTG


Statistics
Matches: 56,  Mismatches: 6, Indels: 2
        0.88            0.09        0.03

Matches are distributed among these distances:
  58   55  0.98
  59    1  0.02

ACGTcount: A:0.21, C:0.22, G:0.17, T:0.39


Consensus pattern (58 bp):   
TTCAAGGGTCTTCACGACTTAATCTTGATCAGAAACTTTGTTGCCGCTTAATATTCGC

Done.