Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400572.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3764.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1669
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.37

Warning! 70 characters in sequence are not A, C, G, or T


Found at i:395 original size:171 final size:171

Alignment explanation


    Indices: 1--1662  Score: 1103
    Period size: 171  Copynumber: 9.7  Consensus size: 171

                  *         * *                         *         *          
          1 ATTGACGAGAAAAGTCTACTTATAGCCTCTCATTCCTTCAAAAGTCTTATTACTAGCTTTAAATG
          1 ATTGACAAGAAAAGTCCATTTATAGCCTCTCATTCCTTCAAAAGCCTTATTACTCGCTTTAAATG

             *   *             *          *          *  *   *                
         66 GCTTTATAATCTAATAATTAATTTTAAGTTAAATTTTTTTATATGTTTAATTAAAACAGA-TAAT
         66 GTTTTCTAATCTAATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGATTAAAACAGACT-AT

                  * *    *                 * *       *
        130 AATTGACTGTCTATCTCGAGAAACGTGAAGACAGAAGCATTA
        130 AATTGAATATCTACCTCGAGAAACGTGAAGAAAAAAGCATTC

                                     * * *    **********                     
        172 ATTGACAAGAAAAGTCCATTTATAGTCACCCATTNNNNNNNNNNCCTTATTACTCGCTTTAAATG
          1 ATTGACAAGAAAAGTCCATTTATAGCCTCTCATTCCTTCAAAAGCCTTATTACTCGCTTTAAATG

                      * *     *        *        *                            
        237 GTTTTCTAATTTGATAATCGATTGTT-GGTTGAATTGTTTTACATTTTTGATTAAAACAGACTAT
         66 GTTTTCTAATCTAATAATTGATT-TTAAGTTGAATTTTTTTACATTTTTGATTAAAACAGACTAT

             *        *                         *     
        301 ATTTGAATATTTACCTCGAGAAACGTGAAGAAAAAAACATTC
        130 AATTGAATATCTACCTCGAGAAACGTGAAGAAAAAAGCATTC

                * **        *                     *      *          *        
        343 ATTGGCGGGAAAAGTCTATTTATAGCCTCTCATTCCTTTAAAAGCATTATTACTCGTTTTAAATG
          1 ATTGACAAGAAAAGTCCATTTATAGCCTCTCATTCCTTCAAAAGCCTTATTACTCGCTTTAAATG

                  *   *                                  **********      *   
        408 GTTTTCAAATTTAATAATTGATTTTAAGTTGAATTTTTTTACATTNNNNNNNNNNACAGACAATA
         66 GTTTTCTAATCTAATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGATTAAAACAGACTATA

                 * *    *                **     *    
        473 ATTGACTGTCTATCTCGAGAAACGTGAAGCCAAAAGTATTC
        131 ATTGAATATCTACCTCGAGAAACGTGAAGAAAAAAGCATTC

             *  *  *                 * * *    ********** *          *        
        514 AATGGCATGAAAAGTCCATTTATAGTCACCCATTNNNNNNNNNNCTTTATTACTCGTTTTAAATG
          1 ATTGACAAGAAAAGTCCATTTATAGCCTCTCATTCCTTCAAAAGCCTTATTACTCGCTTTAAATG

                    *   *            *             * *              *   *    
        579 GTTTTCTACTCTCATAATTGATTTTCAGTTGAATTTTTTCAGATTTTTTG-TTAAAGCAGGCTAT
         66 GTTTTCTAATCTAATAATTGATTTTAAGTTGAATTTTTTTACA-TTTTTGATTAAAACAGACTAT

             *      *   *   *     * *                 
        643 AGTTGAATGTCTGCCTGGAGAACCATGAAGAAAAAAGCATTC
        130 AATTGAATATCTACCTCGAGAAACGTGAAGAAAAAAGCATTC

                 *      *                         *  *      *****************
        685 ATTGATAAGAAATGTCCATTTATAGCCTCTCATTCCTTTAATAGCCTTNNNNNNNNNNNNNNNNN
          1 ATTGACAAGAAAAGTCCATTTATAGCCTCTCATTCCTTCAAAAGCCTTATTACTCGCTTTAAATG

            *    *      *      * *        *          *      *                
        750 NTTTTATAATCTCATAATTAAATTTAAGTTTAATTTTTTTATATTTTTCATTAAATA-AGACTAT
         66 GTTTTCTAATCTAATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGATTAAA-ACAGACTAT

                              *             *            
        814 AATTGAATGA-CT-CTCTTGAGAGAA-GTGAACAAAAAAGCATTC
        130 AATTGAAT-ATCTAC-CTCGAGA-AACGTGAAGAAAAAAGCATTC

             ** *           *           *                          **        
        856 AAAGGCAAGAAAAGTCAATTTATAGCCTTTCATTCCTTCAAAAGCCTTATTACTCATTTTAAATG
          1 ATTGACAAGAAAAGTCCATTTATAGCCTCTCATTCCTTCAAAAGCCTTATTACTCGCTTTAAATG

                  ************            *                                  
        921 GTTTTCNNNNNNNNNNNNTGATTTTAAGTTAAATTTTTTTACATTTTTGATTAAAACAGA-TAAT
         66 GTTTTCTAATCTAATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGATTAAAACAGACT-AT

                  *      *    *     *          * *    
        985 AATTGACTATCTATCTCGGGAAACATGAAGAAAAATGTATTC
        130 AATTGAATATCTACCTCGAGAAACGTGAAGAAAAAAGCATTC

                                       *   *                          *      
       1027 ATTGACAAGAAAAGTCCATTTAT--CATTACCCATTCCTTCAAAAGCCTTATTACTCGGTTTAAA
          1 ATTGACAAGAAAAGTCCATTTATAGC-CT-CTCATTCCTTCAAAAGCCTTATTACTCGCTTTAAA

                          *        *    *               *               *    
       1090 TGGTTTTCTAATCTCATAATT-AATTTAGGTTGAATTGTTTTATCCATTTTT--TTAAAAAAGGA
         64 TGGTTTTCTAATCTAATAATTGATTTTAAGTTGAATT-TTTT-TACATTTTTGATTAAAACA-GA

                               *           *                 
       1152 CTATAATCTG-ATA-CTTGGCCTCGAGAAACATGAAGAAAAAAGCATTC
        126 CTATAAT-TGAATATC-T-ACCTCGAGAAACGTGAAGAAAAAAGCATTC

                            * *         *               *   *     *          
       1199 ATTGACAAGAAAAGTCTACTTATAGCCTATCATTCCTTCAAAAGTCTTCTTACTAGCTTTAAATG
          1 ATTGACAAGAAAAGTCCATTTATAGCCTCTCATTCCTTCAAAAGCCTTATTACTCGCTTTAAATG

                 *             *          *   *      *      *                
       1264 GTTTTATAATCTAATAATTAATTTTAAGTTAAATATTTTTATATTTTTAATTAAAACAGA-TAAT
         66 GTTTTCTAATCTAATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGATTAAAACAGACT-AT

                  * *    *                   *         
       1328 AATTGACTGTCTATCTCGAGAAA-GATGAAG-ACAAAGCATTC
        130 AATTGAATATCTACCTCGAGAAACG-TGAAGAAAAAAGCATTC

                 *                   * * *       **********                  
       1369 ATTGATAAGAAAAGTCCATTTATAGTCACCCATTCCTNNNNNNNNNNTATTACTCGCTTTAAATG
          1 ATTGACAAGAAAAGTCCATTTATAGCCTCTCATTCCTTCAAAAGCCTTATTACTCGCTTTAAATG

                      * *     *       *  *   * *          *                  
       1434 GTTTTCTAATTTGATAATCGATTTTAGGTAGAACTGTTTTACATTTATGATTAAAACAGACTATA
         66 GTTTTCTAATCTAATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGATTAAAACAGACTATA

               *     *                         **    
       1499 ATTTAATATTTACCTCGAGAAACGTGAAGAAAAAAATATTC
        131 ATTGAATATCTACCTCGAGAAACGTGAAGAAAAAAGCATTC

                ***         *    *   *          *                  *         
       1540 ATTGGTGAGAAAAGTCTATTTGTAGTCTCTCATTCCATCAAAAGCCTTATTACTCACTTTAAATG
          1 ATTGACAAGAAAAGTCCATTTATAGCCTCTCATTCCTTCAAAAGCCTTATTACTCGCTTTAAATG

                                                                       
       1605 GTTTTCTAAAT-TAATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGATTAAAACA
         66 GTTTTCT-AATCTAATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGATTAAAACA

       1663 AACAATA


Statistics
Matches: 1096,  Mismatches: 359, Indels: 72
        0.72            0.24        0.05

Matches are distributed among these distances:
 169    1  0.00
 170  161  0.15
 171  786  0.72
 172  127  0.12
 173   20  0.02
 174    1  0.00

ACGTcount: A:0.33, C:0.13, G:0.12, T:0.37


Consensus pattern (171 bp):   
ATTGACAAGAAAAGTCCATTTATAGCCTCTCATTCCTTCAAAAGCCTTATTACTCGCTTTAAATG
GTTTTCTAATCTAATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGATTAAAACAGACTATA
ATTGAATATCTACCTCGAGAAACGTGAAGAAAAAAGCATTC

Done.