Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397585.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2041.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6035
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.32

Warning! 130 characters in sequence are not A, C, G, or T


Found at i:1225 original size:2 final size:2

Alignment explanation


    Indices: 1218--1242  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

       1208 TCTTTAATTT

                                                 
       1218 TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA T

       1243 TTGAGCATTT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:2910 original size:20 final size:20

Alignment explanation


    Indices: 2885--2926  Score: 75
    Period size: 20  Copynumber: 2.1  Consensus size: 20

       2875 TTTTTATTGA

                                
       2885 TAGTTAAGAGTTATTAAAGT
          1 TAGTTAAGAGTTATTAAAGT

                        *       
       2905 TAGTTAAGAGTTGTTAAAGT
          1 TAGTTAAGAGTTATTAAAGT

              
       2925 TA
          1 TA

       2927 ATAATGTGAA


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.38, C:0.00, G:0.21, T:0.40


Consensus pattern (20 bp):   
TAGTTAAGAGTTATTAAAGT

Found at i:2911 original size:10 final size:11

Alignment explanation


    Indices: 2885--2926  Score: 56
    Period size: 10  Copynumber: 4.2  Consensus size: 11

       2875 TTTTTATTGA

                       
       2885 TAGTTAAGAGT
          1 TAGTTAAGAGT

                       
       2896 TA-TTAA-AGT
          1 TAGTTAAGAGT

                       
       2905 TAGTTAAGAGT
          1 TAGTTAAGAGT

                       
       2916 T-GTTAA-AGT
          1 TAGTTAAGAGT

              
       2925 TA
          1 TA

       2927 ATAATGTGAA


Statistics
Matches: 28,  Mismatches: 0, Indels: 7
        0.80            0.00        0.20

Matches are distributed among these distances:
   9    9  0.32
  10   13  0.46
  11    6  0.21

ACGTcount: A:0.38, C:0.00, G:0.21, T:0.40


Consensus pattern (11 bp):   
TAGTTAAGAGT
Done.