Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400595.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3788.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 816

Length: 1361
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.30

Warning! 238 characters in sequence are not A, C, G, or T


Found at i:567 original size:170 final size:171

Alignment explanation


    Indices: 225--638  Score: 481
    Period size: 170  Copynumber: 2.4  Consensus size: 171

        215 NNNNNNNNNN

                *                                  *         **   *          
        225 AAATAGACTTTTCTTGTCAATGAATGCTTTTTTCTTCACATTTCTCAAGGCAAACATTCAATTAT
          1 AAATGGACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCTCAAGATAAATATTCAATTAT

             * *     *   *                     *                    *********
        290 AATTTGTTTTAATGAAAAATGTAAAAATATTCAACTTAAAATCAATTATGAGATTANNNNNNNNN
         66 AGTCTGTTTGAATCAAAAATGTAAAAATATTCAACCTAAAATCAATTATGAGATTAGAAAACCAT

            ****  *        *       *          *      
        355 NNNNAGTGAGTAATATGACTTTTGAAGGAAAGGGTGACTAT
        131 TAGAAGGGAGTAATAAGACTTTTAAAGGAAAGGGCGACTAT

                           *         *                    *                  
        396 AAATGGACTTTTCTTATCAATGAATCCTTTTTTCTTCACGTTTCTCGAGATAAATATTCAATTAT
          1 AAATGGACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCTCAAGATAAATATTCAATTAT

                                                                             
        461 AGTCTGTTTGAATCAAAAA-GTGAAAAA-ATTCAACCTAAAATCAATTATGAGATTAGAAAACCA
         66 AGTCTGTTTGAATCAAAAATGT-AAAAATATTCAACCTAAAATCAATTATGAGATTAGAAAACCA

                              *            *          
        524 TTAGAAGGGAGTAATAAGGCTTTTAAAGGAATGGGCGACTAT
        130 TTAGAAGGGAGTAATAAGACTTTTAAAGGAAAGGGCGACTAT

                             **         *                       *            
        566 AAATGGACTTTTCTTGTTGATGAATGCTCTTTTCTTCACGTTTCTCAAGATAGATATTCAATTAT
          1 AAATGGACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCTCAAGATAAATATTCAATTAT

                    
        631 AGTCTGTT
         66 AGTCTGTT

        639 NNNNNNNNNN


Statistics
Matches: 203,  Mismatches: 39, Indels: 3
        0.83            0.16        0.01

Matches are distributed among these distances:
 170  126  0.62
 171   77  0.38

ACGTcount: A:0.35, C:0.12, G:0.14, T:0.36


Consensus pattern (171 bp):   
AAATGGACTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCTCAAGATAAATATTCAATTAT
AGTCTGTTTGAATCAAAAATGTAAAAATATTCAACCTAAAATCAATTATGAGATTAGAAAACCAT
TAGAAGGGAGTAATAAGACTTTTAAAGGAAAGGGCGACTAT
Done.