Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400606.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3798.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3345
ACGTcount: A:0.19, C:0.07, G:0.06, T:0.20

Warning! 1642 characters in sequence are not A, C, G, or T


Found at i:2832 original size:171 final size:171

Alignment explanation


    Indices: 2530--2882  Score: 419
    Period size: 171  Copynumber: 2.1  Consensus size: 171

       2520 NNNNNNNNNN

                       *            * *         *       * *   *              
       2530 TTTACATTTTTGATTAAAACAGACTATAATTGAATATCTACCTTGGGAAACATGCAGAAAAAGCC
          1 TTTACATTTTTCATTAAAACAGACCACAATTGAATACCTACCTTAGAAAAAATGCAGAAAAAGCC

                                              *    *            *            
       2595 ATTCATTGAGAAAAAAAATCCATTTATAGTCACCTATTCGTTCAAAAGCCTTGTTATCCGCTTTA
         66 ATTCATTGAGAAAAAAAATCCATTTATAGTCACCCATTCCTTCAAAAGCCTTATTATCCGCTTTA

              * *                        *           
       2660 AATGGTTTTATAATCTCATAATTAATTTTTAGTTGAATTCT
        131 AAAGATTTTATAATCTCATAATTAATTTTAAGTTGAATTCT

                        *                                          *         
       2701 TTTACATTTTTCTTTAAAACAGACCACAATTGAA-AGCCTACCTTAGAAAAAATGTAGAAAAAGC
          1 TTTACATTTTTCATTAAAACAGACCACAATTGAATA-CCTACCTTAGAAAAAATGCAGAAAAAGC

                                  *                                         *
       2765 CATTCATTGA-AAAGAAAAATCTAGTTT-TAGTCACCCATTCCTTCGAAAA-CCTTATTA-CTCT
         65 CATTCATTGAGAAA-AAAAATCCA-TTTATAGTCACCCATTCCTTC-AAAAGCCTTATTATC-CG

                             * *        *          *    * 
       2826 CTTTAAAAGATTTTATATTTTCATAATTGATTTTAAGTTTAATTTT
        126 CTTTAAAAGATTTTATAATCTCATAATTAATTTTAAGTTGAATTCT

                *      
       2872 TTTATATTTTT
          1 TTTACATTTTT

       2883 TGTCAAAACA


Statistics
Matches: 154,  Mismatches: 23, Indels: 10
        0.82            0.12        0.05

Matches are distributed among these distances:
 170    5  0.03
 171  142  0.92
 172    7  0.05

ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39


Consensus pattern (171 bp):   
TTTACATTTTTCATTAAAACAGACCACAATTGAATACCTACCTTAGAAAAAATGCAGAAAAAGCC
ATTCATTGAGAAAAAAAATCCATTTATAGTCACCCATTCCTTCAAAAGCCTTATTATCCGCTTTA
AAAGATTTTATAATCTCATAATTAATTTTAAGTTGAATTCT
Done.