Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400607.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3799.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 714

Length: 1190
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.36

Warning! 80 characters in sequence are not A, C, G, or T


Found at i:323 original size:171 final size:161

Alignment explanation


    Indices: 146--458  Score: 337
    Period size: 171  Copynumber: 1.9  Consensus size: 161

        136 GATGAACGTG

                    *             *                       *   *    *         
        146 AAGAAAATGATATCCATT-G-ACAAGAATTGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTT
          1 AAGAAAATAATATCCATTGGCAAAAGAA--GTCCATTTATAGTCACCCATACCTTCGAAAGCCTT

                    *                        *     *                      * *
        209 ATGACT-CGCTCTAAATGAATTTT-TAATCTCATAATTGTTTTTAAGTTGAAATTTTTTATATTT
         64 ATGACTCCCCT-TAAAT-AATTTTATAATCTCAAAATTGATTTTAAGTTGAAATTTTTTATAATC

                                                         
        272 TTTATTAAAACAGATTNNNNNNNNNNGTCTATCTCAAAAAATATA
        127 TTTATTAAAACAGATT----------GTCTATCTCAAAAAATATA

                                           *         *                       
        317 AAGAAAATAATATCCATTGGCAAAAGAAGTCTATTTATAGTTACCCATACCTTCGAAAGCCTTAT
          1 AAGAAAATAATATCCATTGGCAAAAGAAGTCCATTTATAGTCACCCATACCTTCGAAAGCCTTAT

            *                                               *                
        382 TACTCCCCTTAAATAATTTTATAATCTCAAAATTGATTTTAAGTTGAATTTTTTTATAATCTTTA
         66 GACTCCCCTTAAATAATTTTATAATCTCAAAATTGATTTTAAGTTGAAATTTTTTATAATCTTTA

                  *     
        447 TTAAAATAGATT
        131 TTAAAACAGATT

        459 ATAATTAAAT


Statistics
Matches: 123,  Mismatches: 15, Indels: 8
        0.84            0.10        0.05

Matches are distributed among these distances:
 170    6  0.05
 171  107  0.87
 172    4  0.03
 173    6  0.05

ACGTcount: A:0.35, C:0.13, G:0.09, T:0.39


Consensus pattern (161 bp):   
AAGAAAATAATATCCATTGGCAAAAGAAGTCCATTTATAGTCACCCATACCTTCGAAAGCCTTAT
GACTCCCCTTAAATAATTTTATAATCTCAAAATTGATTTTAAGTTGAAATTTTTTATAATCTTTA
TTAAAACAGATTGTCTATCTCAAAAAATATA
Done.