Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400614.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3804.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5081
ACGTcount: A:0.12, C:0.36, G:0.38, T:0.13


Found at i:641 original size:14 final size:15

Alignment explanation


    Indices: 622--652  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        612 CTGCGCTCGC

                           
        622 CGGCCG-GGCGCGCT
          1 CGGCCGAGGCGCGCT

                           
        636 CGGCCGAGGCGCGCT
          1 CGGCCGAGGCGCGCT

              
        651 CG
          1 CG

        653 CGCGCAGCCC


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    6  0.38
  15   10  0.62

ACGTcount: A:0.03, C:0.42, G:0.48, T:0.06


Consensus pattern (15 bp):   
CGGCCGAGGCGCGCT

Done.