Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400616.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3806.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1888
ACGTcount: A:0.21, C:0.08, G:0.07, T:0.21

Warning! 807 characters in sequence are not A, C, G, or T


Found at i:1117 original size:170 final size:171

Alignment explanation


    Indices: 831--1204  Score: 432
    Period size: 170  Copynumber: 2.2  Consensus size: 171

        821 NNNNNNNNNA

                          *      *          *                                
        831 TGGTTTTATAATCTCATAATTAATTTTAAGTTCAATTTTTTTACAATTTTTCAGTAAAACAGACT
          1 TGGTTTTATAATCTAATAATTGATTTTAAGTTAAATTTTTTTACAATTTTTCAGTAAAACAGACT

                        **** ***    ***                 *                   *
        896 AAAATTGAATGTTTTCCTTGAGAAGTGTAAAGAAAAAAGCATTCTTTGGCAAGAAAAGTCTT-TT
         66 AAAATTGAATGTCCAACACAAGAAACATAAAGAAAAAAGCATTCATTGGCAAGAAAA-T-TTCTA

                        *     *     *                   
        960 TACAGCCTCCCATTCCTTTAAAAGTCTTATTACTCACTTCAAAT
        129 TACAGCCTCCCAATCCTTGAAAAGGCTTATTACTCACTT-AAAT

                                        *                      * *           
       1004 T-GTTTTATAATCTAATAATTGATTTTATGTTAAATTTTTTTAC-ATTTTTTATTAAAACA-ACT
          1 TGGTTTTATAATCTAATAATTGATTTTAAGTTAAATTTTTTTACAATTTTTCAGTAAAACAGACT

             *                          *       *                            
       1066 ATAATTGAATGTCCAACACAAGAAACATGAAGAAAAGAGCATTCATTGGCAAGAAAATTTCGTAT
         66 AAAATTGAATGTCCAACACAAGAAACATAAAGAAAAAAGCATTCATTGGCAAGAAAATTTC-TAT

             *                               **   *   
       1131 ATAGCCTCCCAATCCTTGAAAAGGCTTATTACTTGCTTTAAT
        130 ACAGCCTCCCAATCCTTGAAAAGGCTTATTACTCACTTAAAT

                                            
       1173 TGGTTTTATAATCTAATAATTGATTTTAAGTT
          1 TGGTTTTATAATCTAATAATTGATTTTAAGTT

       1205 GAATNNNNNN


Statistics
Matches: 169,  Mismatches: 29, Indels: 9
        0.82            0.14        0.04

Matches are distributed among these distances:
 168    2  0.01
 169    5  0.03
 170  109  0.64
 171   14  0.08
 172   38  0.22
 173    1  0.01

ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40


Consensus pattern (171 bp):   
TGGTTTTATAATCTAATAATTGATTTTAAGTTAAATTTTTTTACAATTTTTCAGTAAAACAGACT
AAAATTGAATGTCCAACACAAGAAACATAAAGAAAAAAGCATTCATTGGCAAGAAAATTTCTATA
CAGCCTCCCAATCCTTGAAAAGGCTTATTACTCACTTAAAT
Done.