Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400620.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_381.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2985
ACGTcount: A:0.23, C:0.09, G:0.07, T:0.25

Warning! 1089 characters in sequence are not A, C, G, or T


Found at i:1155 original size:171 final size:170

Alignment explanation


    Indices: 893--1218  Score: 438
    Period size: 171  Copynumber: 1.9  Consensus size: 170

        883 AATGCCTTCG

                                          * * *                              
        893 AAAGCCTTATTACTCGCTTTAAATAATTTTTTTATCTCATAAATACTTTTAAGTTGAACTTTCTT
          1 AAAGCCTTATTACTCGCTTTAAATAATTTTATAACCTCATAAATACTTTTAAGTTGAACTTTCTT

                                        **         *        *                
        958 ATATTTATTATTAAAACAGATTATAATTGTATGTTTACCGTGAGAAACTTGAAGAAAAAAATATC
         66 ATATTTATTATTAAAACAGATTATAATTAAATGTTTACCCTGAGAAACGTGAAGAAAAAAA-ATC

                          *  *                       
       1023 CATTAGCAAAAAAAGTCTATTTATAGACATTGATCCGTTCA
        130 CATTAGCAAAAAAACTCCATTTATAGACATTGATCCGTTCA

                                 *  *                 * **      *          * 
       1064 AAAGCCTTATTACTCGCTTTATATGATTTTATAACCTCATAATTGTTTTTAATTTG-ACTTTTTT
          1 AAAGCCTTATTACTCGCTTTAAATAATTTTATAACCTCATAAATACTTTTAAGTTGAAC-TTTCT

                   *                             *        *      *           
       1128 TATATTTTTTATTAAAACAGATTATAATTAAATGTTTCCCCTGAGAGACGTGAGGAAAAAAAATC
         65 TATATTTATTATTAAAACAGATTATAATTAAATGTTTACCCTGAGAAACGTGAAGAAAAAAAATC

                *                     
       1193 CATTGGCAAAAAAACTCCATTTATAG
        130 CATTAGCAAAAAAACTCCATTTATAG

       1219 TCACCCATAC


Statistics
Matches: 133,  Mismatches: 21, Indels: 3
        0.85            0.13        0.02

Matches are distributed among these distances:
 170   28  0.21
 171  105  0.79

ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40


Consensus pattern (170 bp):   
AAAGCCTTATTACTCGCTTTAAATAATTTTATAACCTCATAAATACTTTTAAGTTGAACTTTCTT
ATATTTATTATTAAAACAGATTATAATTAAATGTTTACCCTGAGAAACGTGAAGAAAAAAAATCC
ATTAGCAAAAAAACTCCATTTATAGACATTGATCCGTTCA
Done.