Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397590.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2042.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5610
ACGTcount: A:0.30, C:0.15, G:0.14, T:0.28

Warning! 773 characters in sequence are not A, C, G, or T


Found at i:3134 original size:33 final size:33

Alignment explanation


    Indices: 3092--3157  Score: 123
    Period size: 33  Copynumber: 2.0  Consensus size: 33

       3082 TATAATAAAG

                                  *          
       3092 TTCATGCATAATTAAGTTAACTTAATCTTTGGT
          1 TTCATGCATAATTAAGTTAACTCAATCTTTGGT

                                             
       3125 TTCATGCATAATTAAGTTAACTCAATCTTTGGT
          1 TTCATGCATAATTAAGTTAACTCAATCTTTGGT

       3158 GGGGTAATTT


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  33   32  1.00

ACGTcount: A:0.30, C:0.14, G:0.12, T:0.44


Consensus pattern (33 bp):   
TTCATGCATAATTAAGTTAACTCAATCTTTGGT
Done.