Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400624.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3813.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 600

Length: 1001
ACGTcount: A:0.20, C:0.09, G:0.07, T:0.22

Warning! 417 characters in sequence are not A, C, G, or T


Found at i:335 original size:170 final size:170

Alignment explanation


    Indices: 1--357  Score: 378
    Period size: 170  Copynumber: 2.1  Consensus size: 170

                             *     *               *   *    *     *          
          1 AGAAAAGCCCATTTATAGTCACCTAAGCCTTCAAAAGCCTTATTACTCTCTTTAGAAGCTTTTAT
          1 AGAAAAGCCCATTTATAATCACCCAAGCCTTCAAAAGCCATATGACTCCCTTTAAAAGCTTTTAT

                *  *    *             * *   * *               *              
         66 AGCCTTACAATTTATTTTAAGTTTAATTTTTTTATATTTTTGGTAAAACATATTATAATTGAATG
         66 AGCCATAAAATTGATTTTAAGTTTAACTGTTTCACATTTTTGGTAAAACAAATTATAATTGAATG

             * *       **********      *          * 
        131 TTTGCCTAGGANNNNNNNNNNAAAGACCCATTCATTGGTA
        131 TCTACCTAGGAAAACATGAAGAAAGACACATTCATTGGCA

                                       *         *                           
        171 AGAAAAGCCCATTTATAATCACCCAAGTCTTCAAAAGTCATATGACTCCCTTTAAATAG-TTTTA
          1 AGAAAAGCCCATTTATAATCACCCAAGCCTTCAAAAGCCATATGACTCCCTTTAAA-AGCTTTTA

                                                                             
        235 TAGCCATAAAATTGATTTTAAGTTTAACTGTTTCACATTTTTGGTTAAAACAAATTATAATTGAA
         65 TAGCCATAAAATTGATTTTAAGTTTAACTGTTTCACATTTTTGG-TAAAACAAATTATAATTGAA

                      *                                
        300 TGTCTACCTTTGG-AAACATGAAGAAA-ACACATTCATTGGCA
        129 TGTCTACC-TAGGAAAACATGAAGAAAGACACATTCATTGGCA

                    *        
        341 AGAAAAGCACATTTATA
          1 AGAAAAGCCCATTTATA

        358 GCCACACAAN


Statistics
Matches: 152,  Mismatches: 32, Indels: 6
        0.80            0.17        0.03

Matches are distributed among these distances:
 170  119  0.78
 171   30  0.20
 172    3  0.02

ACGTcount: A:0.35, C:0.15, G:0.11, T:0.35


Consensus pattern (170 bp):   
AGAAAAGCCCATTTATAATCACCCAAGCCTTCAAAAGCCATATGACTCCCTTTAAAAGCTTTTAT
AGCCATAAAATTGATTTTAAGTTTAACTGTTTCACATTTTTGGTAAAACAAATTATAATTGAATG
TCTACCTAGGAAAACATGAAGAAAGACACATTCATTGGCA
Done.