Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400630.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_382.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4916
ACGTcount: A:0.19, C:0.07, G:0.06, T:0.20

Warning! 2332 characters in sequence are not A, C, G, or T


Found at i:312 original size:171 final size:171

Alignment explanation


    Indices: 20--489  Score: 521
    Period size: 171  Copynumber: 2.7  Consensus size: 171

         10 TTGGAAAATG

                                 *       *   *  **                           
         20 TGAAGAAAAAGATATCCATTGGCAAGAAATA-TCCACGTATAGTCACCCATGCCTTTAAAAGCTT
          1 TGAAGAAAAAGATATCCATTGACAA-AAAAAGTTCATTTATAGTCACCCATGCCTTTAAAAGCTT

                       *                             **********              
         84 TATTACTCGCTCTAAATAATTTTATAACCTCATAATTGATTNNNNNNNNNNTTTTTTTATATTTT
         65 TATTACTCGCTTTAAATAATTTTATAACCTCATAATTGATTTTAATTTGAATTTTTTTATATTTT

                           *                ** *    **
        149 TTATTAAAACAGATTCTAATTGAATGTTTACCTTAGGAAATG
        130 TTATTAAAACAGATTATAATTGAATGTTTACCACAAGAAAAC

                                 **  *   **********                *         
        191 TGAAGAAAAAGATATCCATTGGTAAGAAANNNNNNNNNNTAGTCACCCATGCCTTCAAAAGCTTT
          1 TGAAGAAAAAGATATCCATTGACAAAAAAAGTTCATTTATAGTCACCCATGCCTTTAAAAGCTTT

                   *                      *                                  
        256 ATTACTCACTTTAAA-AGATTTTATAACCTAATAATTGATTTTAATTTGAATTTTTTTATATTTT
         66 ATTACTCGCTTTAAATA-ATTTTATAACCTCATAATTGATTTTAATTTGAATTTTTTTATATTTT

                 *                       **           
        320 TTATTGAAACAGATTATAATTGAATGTTTGTCACAAGAAAAC
        130 TTATTAAAACAGATTATAATTGAATGTTTACCACAAGAAAAC

                                                                             
        362 TGAAGAAAAAGATATCCATTGACAAAAAAAGTTCATTTATAGTCACCCATGCCTTTAAAAGCTTT
          1 TGAAGAAAAAGATATCCATTGACAAAAAAAGTTCATTTATAGTCACCCATGCCTTTAAAAGCTTT

                    *                           *                          
        427 ATTACTCGTTTTAAATAATTTTATAACCTCATAATTCATTTTAATTTGAATTTTTTTATATTT
         66 ATTACTCGCTTTAAATAATTTTATAACCTCATAATTGATTTTAATTTGAATTTTTTTATATTT

        490 NNNNNNNNNN


Statistics
Matches: 243,  Mismatches: 53, Indels: 6
        0.80            0.18        0.02

Matches are distributed among these distances:
 170    3  0.01
 171  239  0.98
 172    1  0.00

ACGTcount: A:0.35, C:0.13, G:0.10, T:0.38


Consensus pattern (171 bp):   
TGAAGAAAAAGATATCCATTGACAAAAAAAGTTCATTTATAGTCACCCATGCCTTTAAAAGCTTT
ATTACTCGCTTTAAATAATTTTATAACCTCATAATTGATTTTAATTTGAATTTTTTTATATTTTT
TATTAAAACAGATTATAATTGAATGTTTACCACAAGAAAAC
Done.