Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400637.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3826.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2358
ACGTcount: A:0.22, C:0.08, G:0.07, T:0.23

Warning! 934 characters in sequence are not A, C, G, or T


Found at i:2101 original size:170 final size:171

Alignment explanation


    Indices: 1869--2178  Score: 439
    Period size: 170  Copynumber: 1.8  Consensus size: 171

       1859 NNNTAAATGG

                                         *                      *            
       1869 TTTTATAATCTCATAATGAATTTTAAGTTGAATTTTTTTACATTTCTGATTACAACATACTATAA
          1 TTTTATAATCTCATAATGAATTTTAAGTTAAATTTTTTTACATTTCTGATTAAAACATACTATAA

              *      *       *                *      *     *                 
       1934 TTGAAA-GTGTA-CCTCGAGAAACGTGAAGAAACTAGCATTCATTGAGAAGAAAAGTCCACTTAG
         66 -TAAAATGTCTACCCT-AAGAAACGTGAAGAAACAAGCATTAATTGACAAGAAAAGTCCACTTAG

                                                       
       1997 AGTCACCCATTCTTTCAAAAAGCTTATTACTCGCTTTAAATAA
        129 AGTCACCCATTCTTTCAAAAAGCTTATTACTCGCTTTAAATAA

                                                          *                  
       2040 TTTTATAATCTCATAATTG-A-TTTAAGTTAAATTTTTTTACATTTTTGATTAAAACATACTATA
          1 TTTTATAATCTCATAA-TGAATTTTAAGTTAAATTTTTTTACATTTCTGATTAAAACATACTATA

                                  *     *                             **  *  
       2103 ATAAAATGTCTACCCTAAGAAATGTGAATAAACAAGCATTAATTGACAAGAAAAGTCCTTTTGGA
         65 ATAAAATGTCTACCCTAAGAAACGTGAAGAAACAAGCATTAATTGACAAGAAAAGTCCACTTAGA

                       
       2168 GTCACCCATTC
        130 GTCACCCATTC

       2179 CNNNNNNNNN


Statistics
Matches: 122,  Mismatches: 14, Indels: 7
        0.85            0.10        0.05

Matches are distributed among these distances:
 169    4  0.03
 170   96  0.79
 171   20  0.16
 172    2  0.02

ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36


Consensus pattern (171 bp):   
TTTTATAATCTCATAATGAATTTTAAGTTAAATTTTTTTACATTTCTGATTAAAACATACTATAA
TAAAATGTCTACCCTAAGAAACGTGAAGAAACAAGCATTAATTGACAAGAAAAGTCCACTTAGAG
TCACCCATTCTTTCAAAAAGCTTATTACTCGCTTTAAATAA
Done.