Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400640.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3829.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2465
ACGTcount: A:0.18, C:0.05, G:0.06, T:0.16

Warning! 1343 characters in sequence are not A, C, G, or T


Found at i:1425 original size:171 final size:171

Alignment explanation


    Indices: 1048--1428  Score: 444
    Period size: 171  Copynumber: 2.2  Consensus size: 171

       1038 NNNNNNNATA

                                        *           *                        
       1048 TAAAAAAATTTAACTTAAAATCAATTATTAGATTATAAAATAATTTAAAGCAAGTAATAGGGCTT
          1 TAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCAAGTAATAGGGCTT

             *                                    *     * *           *      
       1113 TTAAAGGAATAGGTGACTATAAATTGACTTTTCTTCTCCATAAATGCCTTTTTCTACAGGTTTCT
         66 TGAAAGGAATAGGTGACTATAAATTGACTTTTCTTCTCAATAAACGACTTTTTCTACACGTTTCT

                   * *               *               
       1178 TGAGACAGGTATTCAACTATAGTCTGTTTTAACCAAAAATG
        131 TGAGACAAGCATTCAACTATAGTCTATTTTAACCAAAAATG

                                **********                      *          * 
       1219 TAAAAAAA-TTATACTTAAANNNNNNNNNNAGATTATAAAACAATTTAAAGCGAGTAATATGGTC
          1 TAAAAAAATTTA-ACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCAAGTAATA-GGGC

                        *     *                   *     *              *     
       1283 TTTGAAA-GAATGGGTGATTAT-AATTGGACTTTTCTTTTCAATGAACGACTTTTTCTATACGTT
         64 TTTGAAAGGAATAGGTGACTATAAATT-GACTTTTCTTCTCAATAAACGACTTTTTCTACACGTT

                              **                       *
       1346 TCTTGAGACAAGCATTCATTTATAGTCTATTTTAACCAAAAATT
        128 TCTTGAGACAAGCATTCAACTATAGTCTATTTTAACCAAAAATG

                                                   
       1390 TAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAA
          1 TAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAA

       1429 NNNNNNNNNN


Statistics
Matches: 167,  Mismatches: 39, Indels: 8
        0.78            0.18        0.04

Matches are distributed among these distances:
 170    7  0.04
 171  148  0.89
 172   12  0.07

ACGTcount: A:0.39, C:0.11, G:0.12, T:0.36


Consensus pattern (171 bp):   
TAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCAAGTAATAGGGCTT
TGAAAGGAATAGGTGACTATAAATTGACTTTTCTTCTCAATAAACGACTTTTTCTACACGTTTCT
TGAGACAAGCATTCAACTATAGTCTATTTTAACCAAAAATG
Done.