Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400642.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3830.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3681
ACGTcount: A:0.27, C:0.08, G:0.11, T:0.28

Warning! 993 characters in sequence are not A, C, G, or T


Found at i:295 original size:174 final size:171

Alignment explanation


    Indices: 1--396  Score: 449
    Period size: 174  Copynumber: 2.3  Consensus size: 171

                 *                               **                          
          1 TTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGTTTTTGAAGGAA-TGAGATACTATAAA
          1 TTATGGGATTATAAAAC-ATTTAAAGCGAGTAATAAGCCTTTTGAAGGAATTGAGATACTATAAA

                                                             *             * 
         65 TGACTTTTCTTGCCAATGAATACTTTTTTTTTTCATGTATCTCAAGGTAGACATTCAATTATAGT
         65 TGACTTTTCTTGCCAATGAATACTTTTTTTTTTCATGTATCTCAAGGTAAACATTCAATTATAAT

                      *   **********    *             
        130 CTATTTTAATGAAANNNNNNNNNNAATTTAACTTAAAATCAA
        130 CTATTTTAATAAAATAAATAAAGAAATTGAACTTAAAATCAA

                                      *    *                                 
        172 TTATGGGATTATAAAATCATTTAAAGTGAGTGATAAGCCTTTTGAAGGAATTG-G-TGACTATAA
          1 TTATGGGATTATAAAA-CATTTAAAGCGAGTAATAAGCCTTTTGAAGGAATTGAGAT-ACTATAA

                        *  *          *                                      
        235 ATGAACTCTTTTTTTTCCAATGAAT-GTCTTTTTTTTTCATGTATCTCAAGGTAAACATTCAATT
         64 ATG-A--CTTTTCTTGCCAATGAATACT-TTTTTTTTTCATGTATCTCAAGGTAAACATTCAATT

            *      *                                       
        299 GTAATCTGTTTTAATAAAATAAATAAAGAAATTGAACTTAAAATCAA
        125 ATAATCTATTTTAATAAAATAAATAAAGAAATTGAACTTAAAATCAA

              *                               *  *             
        346 TTTTGGGATTATAAAACCATTTAAAGCGAGTAATGAGTCTTTTGAAGGAAT
          1 TTATGGGATTATAAAA-CATTTAAAGCGAGTAATAAGCCTTTTGAAGGAAT

        397 AANNNNNNNN


Statistics
Matches: 188,  Mismatches: 30, Indels: 11
        0.82            0.13        0.05

Matches are distributed among these distances:
 170    1  0.01
 171   54  0.29
 172    4  0.02
 173    1  0.01
 174  128  0.68

ACGTcount: A:0.36, C:0.09, G:0.14, T:0.38


Consensus pattern (171 bp):   
TTATGGGATTATAAAACATTTAAAGCGAGTAATAAGCCTTTTGAAGGAATTGAGATACTATAAAT
GACTTTTCTTGCCAATGAATACTTTTTTTTTTCATGTATCTCAAGGTAAACATTCAATTATAATC
TATTTTAATAAAATAAATAAAGAAATTGAACTTAAAATCAA
Done.