Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400644.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3832.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1867
ACGTcount: A:0.16, C:0.07, G:0.08, T:0.16

Warning! 993 characters in sequence are not A, C, G, or T


Found at i:160 original size:13 final size:13

Alignment explanation


    Indices: 142--166  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        132 TTATTTGGAG

                         
        142 CCTATTTAAGGAA
          1 CCTATTTAAGGAA

                        
        155 CCTATTTAAGGA
          1 CCTATTTAAGGA

        167 GCCTTTTTCA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32


Consensus pattern (13 bp):   
CCTATTTAAGGAA
Done.