Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400650.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3838.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1753
ACGTcount: A:0.22, C:0.08, G:0.08, T:0.25

Warning! 648 characters in sequence are not A, C, G, or T


Found at i:1686 original size:171 final size:162

Alignment explanation


    Indices: 1388--1716  Score: 292
    Period size: 171  Copynumber: 2.0  Consensus size: 162

       1378 TCTAAATAGG

                               *                 *       *                   
       1388 TTTATAATCTCATAATTAATTTTAAGTGTAATTTTTTTATATTTTGGATTAAAACAGATAATAAT
          1 TTTATAATCTCATAATTAACTTTAAGTGTAATTTTTTAATATTTTAGATTAAAACAGATAATAAT

                      *     *                 *   *               **       * 
       1453 TGAATGTCTATCTTAAGAAACGTGAAAGAAAAAGTATTTATTATCAAGAAAAGTGTATTTATAGT
         66 TGAATGTCTACCTTAACAAACGTGAAAGAAAAAGCATTCATTATCAAGAAAAGTCCATTTATAAT

               **              *                      
       1518 CACTTATTCC-TTCAAAAGTCTTATTACANNNNNNNNNNGGT
        131 CACCCATTCCTTTCAAAAGCCTTATTACA----------GGT

                    *        *                                               
       1559 TTTATAATGTCATAATTGACTTTAAGT-TGAATTTTTTAATAATTTTAG-TTAAAACAGACT-AT
          1 TTTATAATCTCATAATTAACTTTAAGTGT-AATTTTTTAAT-ATTTTAGATTAAAACAGA-TAAT

                      * *         *                        *      *          
       1621 AATTGAATGTTTGCCTTAACAATCGTG-AAGAACAAAGCATTCATTGGT-AAGAGAAGTCCATTT
         63 AATTGAATGTCTACCTTAACAAACGTGAAAGAA-AAAGCATTCATT-ATCAAGAAAAGTCCATTT

                                        *    
       1684 ATAATCACCCATTCCTTTCAAAAGCCTTTTTAC
        126 ATAATCACCCATTCCTTTCAAAAGCCTTATTAC

       1717 TCGCTTTAAA


Statistics
Matches: 131,  Mismatches: 21, Indels: 11
        0.80            0.13        0.07

Matches are distributed among these distances:
 170    6  0.05
 171  102  0.78
 172   23  0.18

ACGTcount: A:0.36, C:0.11, G:0.12, T:0.38


Consensus pattern (162 bp):   
TTTATAATCTCATAATTAACTTTAAGTGTAATTTTTTAATATTTTAGATTAAAACAGATAATAAT
TGAATGTCTACCTTAACAAACGTGAAAGAAAAAGCATTCATTATCAAGAAAAGTCCATTTATAAT
CACCCATTCCTTTCAAAAGCCTTATTACAGGT
Done.