Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400660.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3847.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2813
ACGTcount: A:0.25, C:0.07, G:0.08, T:0.22

Warning! 1059 characters in sequence are not A, C, G, or T


Found at i:2690 original size:172 final size:164

Alignment explanation


    Indices: 2402--2792  Score: 421
    Period size: 172  Copynumber: 2.3  Consensus size: 164

       2392 GTTAATTTTG

                        *        *  *                  *  *        *         
       2402 AGATTATAAAACCATTGAAAGTGATTAATAAGGCTTTTGAAGGAATAGGTGACTATAAATGAAAT
          1 AGATTATAAAACTATT-AAAGCGAGTAATAAGGCTTTTGAAGGTATGGGTGACTAAAAATGAAAT

               *    *                                *  *       **   *       
       2467 TTTCTTGCTAATGAATGCCTATTTTTCTACATTTCTCGAGGTAGCCATTCAATTATAGCCTGTTT
         65 TTTATTGCCAATGAATGCCTATTTTTCTACATTTCTCGAGGGAGACATTCAACAATAACCTGTTT

                                                      
       2532 TAACCAAAAATGTAAACAAAATTCAACTTAAAATCAATTATC
        130 TAACCAAAAATGT------AATT-AACTTAAAATCAATTATC

                                     *            *                       *  
       2574 AGATTATAAAACTACTTAAAGCGAGGAATAAGGCTTTTAAAGGTATGGGTGACTAAAAATG-GAT
          1 AGATTATAAAACTA-TTAAAGCGAGTAATAAGGCTTTTGAAGGTATGGGTGACTAAAAATGAAAT

                       *                                                 *   
       2638 ATTTATTGCCATTGAATG-C-ATTTTTCTTTACATTTCTCGAGGGAGACATTCAACAATAATCTG
         65 -TTTATTGCCAATGAATGCCTATTTTTC--TACATTTCTCGAGGGAGACATTCAACAATAACCTG

                      *                        * *
       2701 TTTTAACCAACAATGTAATTAACTTAAAATCAATTTTG
        127 TTTTAACCAAAAATGTAATTAACTTAAAATCAATTATC

                    *            *                                 
       2739 AGATTATAGAA-TCATTTAAAACGAGTAATAAGGCTTTTGAAGGTATGGGTGACT
          1 AGATTATAAAACT-A-TTAAAGCGAGTAATAAGGCTTTTGAAGGTATGGGTGACT

       2793 GTAAATTGAC


Statistics
Matches: 188,  Mismatches: 26, Indels: 17
        0.81            0.11        0.07

Matches are distributed among these distances:
 164    1  0.01
 165   63  0.34
 166    4  0.02
 170    7  0.04
 171    3  0.02
 172  108  0.57
 173    2  0.01

ACGTcount: A:0.38, C:0.13, G:0.16, T:0.34


Consensus pattern (164 bp):   
AGATTATAAAACTATTAAAGCGAGTAATAAGGCTTTTGAAGGTATGGGTGACTAAAAATGAAATT
TTATTGCCAATGAATGCCTATTTTTCTACATTTCTCGAGGGAGACATTCAACAATAACCTGTTTT
AACCAAAAATGTAATTAACTTAAAATCAATTATC
Done.