Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400673.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3859.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 968

Length: 1614
ACGTcount: A:0.21, C:0.07, G:0.06, T:0.21

Warning! 721 characters in sequence are not A, C, G, or T


Found at i:466 original size:170 final size:171

Alignment explanation


    Indices: 36--610  Score: 625
    Period size: 172  Copynumber: 3.4  Consensus size: 171

         26 TCTATCTCGA

                 *         * *        *                   *     **           
         36 GAAACGTGCAAAAAAACCATTCATTAAAAAGAAAAGTCCATTTATAATCACTTGTTCCTTCAAAA
          1 GAAACATGCAAAAAAGCTATTCATTAGAAAGAAAAGTCCATTTATAGTCACTCATTCCTTCAAAA

                 *      *          *                        *  *             
        101 GGCTTGTTAC-CTACTTTT-AATAGTTTTATAATCTCATAATTGATTTCAAATTGAATTTTTTTA
         66 GGCTTATTACTCGA-TTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTA

                             * *            * *         
        164 CATTTTTTGTTAAAACAGAGTAT-ATCTGAATACCTG-CCTTGG
        130 CA-TTTTTGTTAAAACATACTATAAT-TGAATGCTTGACCTTGG

                    *                 *                                      
        206 GAAACATGTAGAAAAAGCCTATTCAACTA-AAAGAAAAGTCCATTTATAGTCAAC-CATTCCTTC
          1 GAAACATGCA-AAAAAG-CTATTC-ATTAGAAAGAAAAGTCCATTTATAGTC-ACTCATTCCTTC

                 *                               * *                *        
        269 AAAAGCCTTATTACTCGA-TTTAAATGGTTTTATAATTTTATAATTGATTTTAAGTAGAATTTTT
         62 AAAAGGCTTATTACTCGATTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTT

               *                          *            * *
        333 TTATATTTTTAGTTAAAACATACTATAATTAAATGCTTGACC-CGA
        127 TTACATTTTT-GTTAAAACATACTATAATTGAATGCTTGACCTTGG

            *               *                             *  *               
        378 AAAACATGCAAAAAAGTTATTCATTGAGAAA-AAAAGTCCATTTATTGTGACTCATTCCTTCAAA
          1 GAAACATGCAAAAAAGCTATTCATT-AGAAAGAAAAGTCCATTTATAGTCACTCATTCCTTCAAA

                                         *                                   
        442 AGGCTTATTACTC-ATTTTAAATGGTTTTCTAATCTCATAATTGATTTTAAGTTGAATTTTTTTA
         65 AGGCTTATTACTCGATTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTA

                                                *       
        506 CACTTTTTGATTAAAACATACTATAATTGAATG-TTTACCTTGG
        130 CA-TTTTTG-TTAAAACATACTATAATTGAATGCTTGACCTTGG

                 * *          *                    *                       
        549 GAAACGTTCAAAAAAAGCCATTCATT-GAGAAGAAAAGTTCATTTATAGTCACTCATTCCTTC
          1 GAAACATGC-AAAAAAGCTATTCATTAGA-AAGAAAAGTCCATTTATAGTCACTCATTCCTTC

        611 NNNNNNNNNN


Statistics
Matches: 337,  Mismatches: 49, Indels: 36
        0.80            0.12        0.09

Matches are distributed among these distances:
 169    5  0.01
 170  108  0.32
 171   58  0.17
 172  155  0.46
 173   11  0.03

ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38


Consensus pattern (171 bp):   
GAAACATGCAAAAAAGCTATTCATTAGAAAGAAAAGTCCATTTATAGTCACTCATTCCTTCAAAA
GGCTTATTACTCGATTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAC
ATTTTTGTTAAAACATACTATAATTGAATGCTTGACCTTGG
Done.