Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018400681.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3865.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2155
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Found at i:482 original size:172 final size:173
Alignment explanation
Indices: 1--813 Score: 668
Period size: 171 Copynumber: 4.7 Consensus size: 173
* * * * * *
1 GGACTTTTCTTGTCAATGAATGTCTTTTTCTTCATGTTTCTCAAGGTAGACATTAAATTATAATA
1 GGACTTTTCATGCCAATGAAAGTCTTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTATAATC
* *
66 TGTTTTAATG-AAAATATAAAAAAAATACAACTTAAAATCAATTATGAGATTATAAAACCT-TTT
66 TATTTTAATGAAAAATATAAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAA-CTATTT
* * ** *
129 AAAATGAGTAATAAGGCTTCTGAAGGAA-TGAGAGACTATAAAT
130 AAAATGAGTAATAAGGCTTTTCAAAAAATTGAGCGACTATAAAT
* * * * * * ** * ** ** *
172 GGACTTCTCTTCCCAATCAATGGCTTTTTCTAGACGTTTATTGAGACA-AGTATTCAATTA-AAG
1 GGACTTTTCATGCCAATGAAAGTCTTTTTCTTCACGTTTCTCAAGGTAGA-CATTCAATTATAA-
* * * * *
235 TCTATTTT-ATGAAAAATGTAAAAAACATTTAACTTAAAATCTATTATGAGTTTATAAAA-TCAT
64 TCTATTTTAATGAAAAATATAAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACT-AT
* *
298 TTAAAATGAGTAATCAGGCTTTTGAAAAAATTGA-CGACTATAAAT
128 TTAAAATGAGTAATAAGGCTTTTCAAAAAATTGAGCGACTATAAAT
* * *
343 GGACTTTTCATACCAATGAAAGTCTTTATCTTCACGTTTCTCAAGGTAGACATCCAATTATAATC
1 GGACTTTTCATGCCAATGAAAGTCTTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTATAATC
** * * * * *
408 TATTTTAACCAAAATTGTAAAAAAAATTCAACTTAAAATCGATTTTGAGACTATAAAACTATTTA
66 TATTTTAATGAAAAATATAAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTTA
* * ** * * *
473 AAGTGAGTAATACGGCTTTTCAAGGAA-TAAGTGACGATAAAT
131 AAATGAGTAATAAGGCTTTTCAAAAAATTGAGCGACTATAAAT
* * ** * *
515 GGACTTTTCTTGCCAAT-AAA-TCTTTTTTTCTTCACATTTCTGGAGGTATACATTCAATTATAG
1 GGACTTTTCATGCCAATGAAAGTC--TTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTATAA
* * * * * * * *
578 TCTGTTTAAATAAAAAATAT-ATAATAATTCAACTTAAAATCAATTATTAGTTTACAAAACTATT
64 TCTATTTTAATGAAAAATATAAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTATT
*** * * *
642 TAAAGCAAGTAATAAGGC-TTTCAAAGGAATT-AGTGACTATAAAC
129 TAAAATGAGTAATAAGGCTTTTCAAA-AAATTGAGCGACTATAAAT
* * * ** * * * * **
686 GGACTTTTCATGCCAATGGATGGCTTTTGGTTCACGTTCCCCAAGGCAAACATTCAATTATAGCC
1 GGACTTTTCATGCCAATGAAAGTCTTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTATAATC
* * * *
751 TTTTTTAAT-AAAAACTAT-AAAAAATTTGAACTTAAAATCAATTATGAGATTATAAAACCATTT
66 TATTTTAATGAAAAA-TATAAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTT
814 CTTACCAATG
Statistics
Matches: 509, Mismatches: 115, Indels: 36
0.77 0.17 0.05
Matches are distributed among these distances:
169 1 0.00
170 19 0.04
171 341 0.67
172 146 0.29
173 2 0.00
ACGTcount: A:0.39, C:0.13, G:0.12, T:0.35
Consensus pattern (173 bp):
GGACTTTTCATGCCAATGAAAGTCTTTTTCTTCACGTTTCTCAAGGTAGACATTCAATTATAATC
TATTTTAATGAAAAATATAAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTATTTA
AAATGAGTAATAAGGCTTTTCAAAAAATTGAGCGACTATAAAT
Found at i:645 original size:343 final size:342
Alignment explanation
Indices: 14--809 Score: 782
Period size: 343 Copynumber: 2.3 Consensus size: 342
4 CTTTTCTTGT
* * * * * **
14 CAATGAATGTCTTTTTCTTCATGTTTCTCAAGGTAGACATTAAATTATAATATGTTTTAATGAAA
1 CAATGAAAGTCTTTATCTTCACGTTTCTCAAGGTAGACATCAAATTATAATATATTTTAACCAAA
*
79 ATATAAAAAAAATACAACTTAAAATCAATTATGAGATTATAAAACCTTTTAAAATGAGTAATAAG
66 ATATAAAAAAAATACAACTTAAAATCAATTATGAGACTATAAAACCTTTTAAAATGAGTAATAAG
* * * * * * *
144 GCTTCTGAAGGAATGAGAGACTATAAATGGACTTCTCTTCCCAATCAATGGCTTTTTCTAGACGT
131 GCTTCTCAAGGAATAAGAGACGATAAATGGACTTCTCTTCCCAATAAATCGCTTTTTCTACACAT
* * * * * *
209 TTATTGAGACAAGTATTCAATTAAAGTCTATTTTATGAAAAATGTAAAAAACATTTAACTTAAAA
196 TTATGGAGACAAGCATTCAATTAAAGTCTATTTAATAAAAAATATAAAAAACATTCAACTTAAAA
* * ** * *
274 TCTATTATGAGTTTATAAAATCATTTAAAATGAGTAATCAGGCTTTTGAAA-AAATT-GACGACT
261 TCAATTATGAGTTTACAAAATCATTTAAAACAAGTAATAAGGC-TTTCAAAGAAATTAG-CGACT
*
337 ATAAATGGACTTTTCATAC
324 ATAAACGGACTTTTCATAC
* *
356 CAATGAAAGTCTTTATCTTCACGTTTCTCAAGGTAGACATCCAATTATAATCTATTTTAACCAAA
1 CAATGAAAGTCTTTATCTTCACGTTTCTCAAGGTAGACATCAAATTATAATATATTTTAACCAAA
* * * * *
421 ATTGTAAAAAAAATTCAACTTAAAATCGATTTTGAGACTATAAAA-CTATTTAAAGTGAGTAATA
66 A-TATAAAAAAAATACAACTTAAAATCAATTATGAGACTATAAAACCT-TTTAAAATGAGTAATA
* * * * * ** *
485 CGGCTTTTCAAGGAATAAGTGACGATAAATGGACTTTTCTTGCCAATAAATCTTTTTTTCTTCAC
129 AGGCTTCTCAAGGAATAAGAGACGATAAATGGACTTCTCTTCCCAATAAATCGCTTTTTCTACAC
* ** * * * *
550 ATTTCTGGAGGTATA-CATTCAATTATAGTCTGTTTAAATAAAAAATATATAATA-ATTCAACTT
194 ATTTATGGAGACA-AGCATTCAATTAAAGTCTATTT-AATAAAAAATATAAAAAACATTCAACTT
* * * *
613 AAAATCAATTATTAGTTTACAAAA-CTATTTAAAGCAAGTAATAAGGCTTTCAAAGGAATTAGTG
257 AAAATCAATTATGAGTTTACAAAATC-ATTTAAAACAAGTAATAAGGCTTTCAAAGAAATTAGCG
*
677 ACTATAAACGGACTTTTCATGC
321 ACTATAAACGGACTTTTCATAC
* * * * * * * * *** * **
699 CAATGGATGGCTTT-TGGTTCACGTTCCCCAAGGCAAACATTC-AATTATAGCCTTTTTTAATAA
1 CAATGAAAGTCTTTAT-CTTCACGTTTCTCAAGGTAGACA-TCAAATTATAATATATTTTAACCA
* ** *
762 AAACTAT-AAAAAATTTGAACTTAAAATCAATTATGAGATTATAAAACC
64 AAA-TATAAAAAAAATACAACTTAAAATCAATTATGAGACTATAAAACC
810 ATTTCTTACC
Statistics
Matches: 369, Mismatches: 75, Indels: 19
0.80 0.16 0.04
Matches are distributed among these distances:
342 101 0.27
343 251 0.68
344 17 0.05
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (342 bp):
CAATGAAAGTCTTTATCTTCACGTTTCTCAAGGTAGACATCAAATTATAATATATTTTAACCAAA
ATATAAAAAAAATACAACTTAAAATCAATTATGAGACTATAAAACCTTTTAAAATGAGTAATAAG
GCTTCTCAAGGAATAAGAGACGATAAATGGACTTCTCTTCCCAATAAATCGCTTTTTCTACACAT
TTATGGAGACAAGCATTCAATTAAAGTCTATTTAATAAAAAATATAAAAAACATTCAACTTAAAA
TCAATTATGAGTTTACAAAATCATTTAAAACAAGTAATAAGGCTTTCAAAGAAATTAGCGACTAT
AAACGGACTTTTCATAC
Found at i:1645 original size:343 final size:337
Alignment explanation
Indices: 811--2009 Score: 1062
Period size: 343 Copynumber: 3.6 Consensus size: 337
801 TATAAAACCA
* * * * * * * * * **
811 TTTCTTACCAATGAATGCCTTTTTTTTCAAGTTTCTTGTGGTAGACATTTAATTATAATCTATTT
1 TTTCTTGCTAATGAATGCCTTTTTCTTCATGTTTCTCGAGGTAGACAATCAATTATAGTCTGGTT
* * * * * **
876 TAACCAAAAGTGTAAATAAATTAAACTAAAAATCAATTTTGAGATTATAAAATCATTTAAAGTGA
66 TAACCAAAA-TGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAA
* * * * * * * *
941 GTAATAAGGCTTTTGAAGGAAT-AGGTGACTAGAAATGGACTTTTCTTACCAATGAGTG-TCGTT
130 GTAATAAGGCTTTTAAAAGAATGA-GAGACTATAAATAGACTTTTCTTGCCAATGAATGCT-TTT
* * * * *
1004 TTCTTCATGTTTTGTAAGGTAAACATTTAATTATAGTCTG-CTTAA-AAAAATGT-ATAAAAATT
193 TTCTTCACGTTTT-TGAGGTAAACATTCAATTATAGTCTGTTTTAACAAAAATGTAAAAAAAATT
* * * * * ** ** **
1066 TAACTCAAAATCAATTATT-AGTTTATAAAACCATCTAAAGCAAGTAATAAGGCTTTCGAAGGTT
257 CAACTTAAAAT-AATTTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTAAAGGAA
1130 TGAGTGCCTATGAATGGACT
321 TGAGT--CTAT-AATGGACT
** ** * * * * * * * *
1150 TTTAATGCTAATGGGTGGCTTTTGCTTCATG-TTCCCTAAGGCAGACATTCAATTATAGCCT-TT
1 TTTCTTGCTAATGAATGCCTTTTTCTTCATGTTTCTC-GAGGTAGACAATCAATTATAGTCTGGT
** *
1213 TTCAAATAGAAATGCAAAAAAAACTTC-ACTTAAAATCAATTATGAGATTATAAAACCATTTAAA
65 TT-AACCA-AAATG-TAAAAAAA-TTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAA
*** * * * *
1277 GTGTGTAATAAGGCTTTTGAAAGAATGGGTGACTATAACTAGACTTTTCTTGCCAATGAATGCTT
126 GCAAGTAATAAGGCTTTTAAAAGAATGAGAGACTATAAATAGACTTTTCTTGCCAATGAATGCTT
* * *
1342 TTTTCTTCACGTTTCTTGAGGCAAACATTCAATTGTAATCTGTTTTAACCAAAAATGTAAAAAAA
191 TTTTCTTCACGTTT-TTGAGGTAAACATTCAATTATAGTCTGTTTTAA-CAAAAATGTAAAAAAA
* **
1407 ATTCAACTTAAAATTATTTTTGAGATTA-ATAAACCATTTAAAGTGAGTAATACTGCTTTTAAAG
254 ATTCAACTTAAAATAATTTTTGAGATTATA-AAACCATTTAAAGTGAGTAATAAGGCTTTTAAAG
1471 GAATGAGTAACTATAAATGGACT
318 GAATGAGT--CTAT-AATGGACT
*
1494 TTTCTTGCTAATGAATGCCTTTTTCTTCATGTTTCTCGAGGTAGATAATCAATTATAGTCTGGTT
1 TTTCTTGCTAATGAATGCCTTTTTCTTCATGTTTCTCGAGGTAGACAATCAATTATAGTCTGGTT
* * *
1559 TAACCAAAGATGTAAAACAATTCAACTTCAAATCAATTATGAGATTATAAAACCATTTAAAACAA
66 TAACCAAA-ATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAA
* * * *
1624 GTAATAAGGCTTTTAAAAGAATGAGAGACTATAAA-CGAAATTTTCTT-CTTAGTGAATGGCTTT
130 GTAATAAGGCTTTTAAAAGAATGAGAGACTATAAATAG-ACTTTTCTTGC-CAATGAAT-GCTTT
* *** *
1687 TTT-TGT-ACTTTTTTTGAGGTTGGCATTCAATTATAGTCTGTTTTAAACAAAAATGTAAAACAA
192 TTTCT-TCAC-GTTTTTGAGGTAAACATTCAATTATAGTCTGTTTT-AACAAAAATGTAAAAAAA
*
1750 ATTCAACTTAAAATCAA-TTTGGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTAAAG
254 ATTCAACTTAAAAT-AATTTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTAAAG
*
1814 GAATG-G------GT-GA--
318 GAATGAGTCTATAATGGACT
* *
1824 ---C-T-CT-A--AATGCATTTTTCTTCACGTTTCTCGAGGTAGAC-ATCAATTATAGTCTGGTT
1 TTTCTTGCTAATGAATGCCTTTTTCTTCATGTTTCTCGAGGTAGACAATCAATTATAGTCTGGTT
*
1880 TAACCAAAGATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCTTTTAAAGCAA
66 TAACCAAA-ATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAA
* * * * *
1945 GTAATAAGGCTTTTAAAGGAATGAGAAACTATAAATGGACATTTCTTGCCAATGATTGACTTTTT
130 GTAATAAGGCTTTTAAAAGAATGAGAGACTATAAATAGACTTTTCTTGCCAATGAATG-CTTTTT
2010 ATACATATTT
Statistics
Matches: 713, Mismatches: 118, Indels: 76
0.79 0.13 0.08
Matches are distributed among these distances:
320 1 0.00
321 130 0.18
322 32 0.04
324 1 0.00
325 2 0.00
326 1 0.00
327 1 0.00
332 2 0.00
333 1 0.00
338 7 0.01
339 44 0.06
340 130 0.18
341 8 0.01
342 6 0.01
343 207 0.29
344 133 0.19
345 7 0.01
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (337 bp):
TTTCTTGCTAATGAATGCCTTTTTCTTCATGTTTCTCGAGGTAGACAATCAATTATAGTCTGGTT
TAACCAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAG
TAATAAGGCTTTTAAAAGAATGAGAGACTATAAATAGACTTTTCTTGCCAATGAATGCTTTTTTC
TTCACGTTTTTGAGGTAAACATTCAATTATAGTCTGTTTTAACAAAAATGTAAAAAAAATTCAAC
TTAAAATAATTTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTAAAGGAATGAGT
CTATAATGGACT
Found at i:1657 original size:171 final size:170
Alignment explanation
Indices: 811--1842 Score: 956
Period size: 172 Copynumber: 6.0 Consensus size: 170
801 TATAAAACCA
* * * * * * *
811 TTTCTTACCAATGAATGCCTTTTTTTTCAAGTTTCTTGTGGTAGACATTTAATTATAATCTATTT
1 TTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTTGAGGTAGACATTCAATTATAGTCTGTTT
* * * * *
876 TAACCAAAAGTGTAAATAAATTAAACTAAAAATCAATTTTGAGATTATAAAATCATTTAAAGTGA
66 TAACCAAAAATGTAAA-AAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGA
* *
941 GTAATAAGGCTTTTGAAGGAAT-AGGTGACTAGAAATGGACT
130 GTAATAAGGCTTTTAAAGGAATGA-GTGACTATAAATGGACT
* * * * * * * *
982 TTTCTTACCAATGAGTGTCGTTTTCTTCATGTTT-TGTAAGGTAAACATTTAATTATAGTCTG-C
1 TTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCT-TGAGGTAGACATTCAATTATAGTCTGTT
* * * * * **
1045 TTAA--AAAAATGTATAAAAATTTAACTCAAAATCAATTATTAGTTTATAAAACCATCTAAAGCA
65 TTAACCAAAAATGTA-AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTG
** ** * *
1108 AGTAATAAGGCTTTCGAAGGTTTGAGTGCCTATGAATGGACT
129 AGTAATAAGGCTTTTAAAGGAATGAGTGACTATAAATGGACT
** * ** * * * * * * *
1150 TTTAATGCTAATGGGTGGCTTTTGCTTCATGTTCCCTAAGGCAGACATTCAATTATAGCCT-TTT
1 TTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTTGAGGTAGACATTCAATTATAGTCTGTTT
** * *
1214 TCAAATAGAAATGCAAAAAAAACTTC-ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAG
66 T-AACCAAAAATG--TAAAAAA-TTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAG
* * * *
1278 TGTGTAATAAGGCTTTTGAAA-GAATGGGTGACTATAACTAGACT
127 TGAGTAATAAGGCTTTT-AAAGGAATGAGTGACTATAAATGGACT
* * * * * *
1322 TTTCTTGCCAATGAATGCTTTTTTCTTCACGTTTCTTGAGGCAAACATTCAATTGTAATCTGTTT
1 TTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTTGAGGTAGACATTCAATTATAGTCTGTTT
* * *
1387 TAACCAAAAATGTAAAAAAAATTCAACTTAAAATTATTTTTGAGATTA-ATAAACCATTTAAAGT
66 TAACCAAAAATGT--AAAAAATTCAACTTAAAATCAATTATGAGATTATA-AAACCATTTAAAGT
** *
1451 GAGTAATACTGCTTTTAAAGGAATGAGTAACTATAAATGGACT
128 GAGTAATAAGGCTTTTAAAGGAATGAGTGACTATAAATGGACT
* * * * *
1494 TTTCTTGCTAATGAATGCCTTTTTCTTCATGTTTCTCGAGGTAGATAATCAATTATAGTCTGGTT
1 TTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTTGAGGTAGACATTCAATTATAGTCTGTTT
* * ***
1559 TAACCAAAGATGTAAAACAATTCAACTTCAAATCAATTATGAGATTATAAAACCATTTAAAACAA
66 TAACCAAAAATGTAAAA-AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGA
* * * * *
1624 GTAATAAGGCTTTTAAAAGAATGAGAGACTATAAACGAAAT
130 GTAATAAGGCTTTTAAAGGAATGAGTGACTATAAATGGACT
* * * * * * *
1665 TTTCTT-CTTAGTGAATGGCTTTTT-TTGTACT-TTTTTTGAGGTTGGCATTCAATTATAGTCTG
1 TTTCTTGC-CAATGAATGCCTTTTTCTT-CA-TGTTTCTTGAGGTAGACATTCAATTATAGTCTG
*
1727 TTTTAAACAAAAATGTAAAACAAATTCAACTTAAAATCAATT-TGGAGATTATAAAACCATTTAA
63 TTTTAACCAAAAATGT-AAA-AAATTCAACTTAAAATCAATTAT-GAGATTATAAAACCATTTAA
* * * *
1791 AGTGAGTAATAAGGCTTTTAAAGGAATGGGTGACTCTAAATGCATT
125 AGTGAGTAATAAGGCTTTTAAAGGAATGAGTGACTATAAATGGACT
1837 TTTCTT
1 TTTCTT
1843 CACGTTTCTC
Statistics
Matches: 694, Mismatches: 141, Indels: 51
0.78 0.16 0.06
Matches are distributed among these distances:
168 128 0.18
169 5 0.01
170 12 0.02
171 194 0.28
172 345 0.50
173 10 0.01
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (170 bp):
TTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTTGAGGTAGACATTCAATTATAGTCTGTTT
TAACCAAAAATGTAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAG
TAATAAGGCTTTTAAAGGAATGAGTGACTATAAATGGACT
Found at i:1990 original size:149 final size:150
Alignment explanation
Indices: 1713--1991 Score: 418
Period size: 149 Copynumber: 1.9 Consensus size: 150
1703 AGGTTGGCAT
*
1713 TCAATTATAGTCTGTTTTAAACAAAAATGTAAAACAAATTCAACTTAAAATCAATTTGGAGATTA
1 TCAATTATAGTCTGGTTTAAACAAAAATGTAAAACAAATTCAACTTAAAATCAATTTGGAGATTA
** * ** * **
1778 TAAAACCATTTAAAGTGAGTAATAAGGCTTTTAAAGGAATGGGTGACTCTAAATGCATTTTTCTT
66 TAAAACCATTTAAAGCAAGTAATAAGGCTTTTAAAGGAATGAGAAACTATAAATGCACATTTCTT
1843 CACGTTTCTCGAGGTAGACA
131 CACGTTTCTCGAGGTAGACA
* *
1863 TCAATTATAGTCTGGTTTAACCAAAGATGTAAAA-AAATTCAACTTAAAATCAATTAT-GAGATT
1 TCAATTATAGTCTGGTTTAAACAAAAATGTAAAACAAATTCAACTTAAAATCAATT-TGGAGATT
* *
1926 ATAAAACCTTTTAAAGCAAGTAATAAGGCTTTTAAAGGAATGAGAAACTATAAATGGACATTTCT
65 ATAAAACCATTTAAAGCAAGTAATAAGGCTTTTAAAGGAATGAGAAACTATAAATGCACATTTCT
1991 T
130 T
1992 GCCAATGATT
Statistics
Matches: 115, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
149 83 0.72
150 32 0.28
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (150 bp):
TCAATTATAGTCTGGTTTAAACAAAAATGTAAAACAAATTCAACTTAAAATCAATTTGGAGATTA
TAAAACCATTTAAAGCAAGTAATAAGGCTTTTAAAGGAATGAGAAACTATAAATGCACATTTCTT
CACGTTTCTCGAGGTAGACA
Done.