Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397596.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2631.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5399
ACGTcount: A:0.33, C:0.09, G:0.11, T:0.31
Warning! 843 characters in sequence are not A, C, G, or T
Found at i:2493 original size:171 final size:168
Alignment explanation
Indices: 1555--2845 Score: 604
Period size: 171 Copynumber: 7.5 Consensus size: 168
1545 NNNAATCAAT
* * * * * * **
1555 TATGAGATTATAAAATAATTTAAAGTGAGTAATAAGGCATTTGAAGGGATGGGTGATTATAAATG
1 TATGAGATTATAAAA-CATTTAAAGCGAGTAATAAAGCTTTTGAAGGAATGTGTGACAATAAATG
* * ** * ** * ** *
1620 GACTTTTCTT-CTAAATCAATAGCTTTTTTCGCATGTTTCTTGAGGCAGGCATTCAATTATAGTC
65 GACTTTTCTTGC-CAATGAAT-GCTTTTTTTACACGTTTCTCAAAGCAAACAATCAATTATAGTC
* ** * * * *
1684 TTTTTTAACCAAAAATGTAAAAAAATTTAGCTTAAAATCAAT
128 TGTTTTAATGAAAAATATAAAAAAATTCAACTTAAAAT-AAA
* * * * * * * **
1726 TTTGGGATTATAAATAAATTTAAAGCTAGTAATAAGGCTTTTGAAAGAATGAGTGATTATAAATG
1 TATGAGATTATAAA-ACATTTAAAGCGAGTAATAAAGCTTTTGAAGGAATGTGTGACAATAAATG
* ** * * * ** ** * * *
1791 GACTCTAGTT-CTCAATGAACGACTTTTTCTACATGTTTCTCATGGCAGGCATTCCATTATAATC
65 GACTTTTCTTGC-CAATGAATG-CTTTTTTTACACGTTTCTCAAAGCAAACAATCAATTATAGTC
* * * *******
1855 TGTTTTAATTAATAATATAAAAAAATTTAACTTANNNNNNNN
128 TGTTTTAATGAAAAATATAAAAAAATTCAACTTA-AAATAAA
** * * * * * * *
1897 NNTGAGATTATAAAACTATTTAAAACAAATAATAAGGCTTTTGACGAAATAG-GTGACTATAAAT
1 TATGAGATTATAAAAC-ATTTAAAGCGAGTAATAAAGCTTTTGAAGGAAT-GTGTGACAATAAAT
* * * ** * * * * * *
1961 AGACTTTTTTTACCAATGAATGTCTTTTTTT-CATATTTTTCGAGGTATACATTCAATTATAGTC
64 GGACTTTTCTTGCCAATGAATG-CTTTTTTTACACGTTTCTCAAAGCAAACAATCAATTATAGTC
* * *
2025 CGTTTAAATGAAAAATATAAAAAAATTTAACTTAAAATCAAA
128 TGTTTTAATGAAAAATATAAAAAAATTCAACTTAAAAT-AAA
** ** * *
2067 TATGAGATTATAAAACAACCTAAAGCGAGCGATAAAGCTTTTGAAGGAATGGGTGATAATAAATG
1 TATGAGATTATAAAAC-ATTTAAAGCGAGTAATAAAGCTTTTGAAGGAATGTGTGACAATAAATG
* * * ** * * * *
2132 GACTTTTCTTGACAGTGAATGTTTTTTTTTTTACGTTTCTCAAGGTAAACATTCGATTATAGTCT
65 GACTTTTCTTGCCAATGAATG-CTTTTTTTACACGTTTCTCAAAGCAAACAATCAATTATAGTCT
***
2197 GTTTTATAT-AAAAATATAAAAAAAATTCAACTTAAAATNNNN
129 GTTTTA-ATGAAAAATAT-AAAAAAATTCAACTTAAAAT-AAA
****** * ** * * * *
2239 NNNNNNATTATAAAACCATTTAAAGTGAGTAATAACTCTTTTGCAGGAATATGTGACTATAAATA
1 TATGAGATTATAAAA-CATTTAAAGCGAGTAATAAAGCTTTTGAAGGAATGTGTGACAATAAATG
* * *
2304 GACTTTT-TTTCTCAATGAATGACTTTTTTTACACGTTTCTCAAAGCAACCAATCAATTATAGAC
65 GACTTTTCTTGC-CAATGAATG-CTTTTTTTACACGTTTCTCAAAGCAAACAATCAATTATAGTC
* * *
2368 TGTTTTAATGAAAAATATAAAAACATTCAGCTTAAAATAACT
128 TGTTTTAATGAAAAATATAAAAAAATTCAACTTAAAATAA-A
* * * * *
2410 TGTGAGATTATAAAATCATTTAAACCGAGTTATAAGGCCTTTGAAGGAATGTGTGACAATAAATG
1 TATGAGATTATAAAA-CATTTAAAGCGAGTAATAAAGCTTTTGAAGGAATGTGTGACAATAAATG
* *********** * * * *
2475 GACTTTTCATGCCAATGAATGCTTTTTTCTTNNNNNNNNNNAAGGTAGACATTCAATTATAGTCT
65 GACTTTTCTTGCCAATGAATGCTTTTTT-TACACGTTTCTCAAAGCAAACAATCAATTATAGTCT
* * *
2540 GTTTTAAAT-AAAAATGTAAAAATATTCAACTTAAAATCAAT
129 GTTTT-AATGAAAAATATAAAAAAATTCAACTTAAAAT-AAA
* ********* * * * *
2581 TATGCGANNNNNNNNNNATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATAG-GTGTCTATAAAT
1 TATGAGA-TTATAAAACATTTAAAGCGAGTAATAAAGCTTTTGAAGGAAT-GTGTGACAATAAAT
* * * * * ** * * * * *
2645 AGACTTTTCTTGCCATTAAATGTATTTTTTTTCATATTTCTCAAGGTAGACATTCAATTATTGTC
64 GGACTTTTCTTGCCAATGAATG-CTTTTTTTACACGTTTCTCAAAGCAAACAATCAATTATAGTC
* * * * *
2710 TGTTTTATTAAAAAATGTAAAACAAATTTAACTTAAAATCAAT
128 TGTTTTAATGAAAAATATAAAA-AAATTCAACTTAAAAT-AAA
* * * *
2753 TATGAGAATATAAAATAATTTAAAGCAAGTAATAAGGCTTTTGAAGGAATG-GATGACAATAAAT
1 TATGAGATTATAAAA-CATTTAAAGCGAGTAATAAAGCTTTTGAAGGAATGTG-TGACAATAAAT
*
2817 AGACTTTTCTT-CTCAATGAATGGCTTTTT
64 GGACTTTTCTTGC-CAATGAAT-GCTTTTT
2846 CTTCTCAATG
Statistics
Matches: 855, Mismatches: 237, Indels: 55
0.75 0.21 0.05
Matches are distributed among these distances:
169 1 0.00
170 137 0.16
171 484 0.57
172 231 0.27
173 2 0.00
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.36
Consensus pattern (168 bp):
TATGAGATTATAAAACATTTAAAGCGAGTAATAAAGCTTTTGAAGGAATGTGTGACAATAAATGG
ACTTTTCTTGCCAATGAATGCTTTTTTTACACGTTTCTCAAAGCAAACAATCAATTATAGTCTGT
TTTAATGAAAAATATAAAAAAATTCAACTTAAAATAAA
Found at i:2536 original size:343 final size:331
Alignment explanation
Indices: 1944--2845 Score: 696
Period size: 343 Copynumber: 2.6 Consensus size: 331
1934 CTTTTGACGA
* * * * * *
1944 AATAGGTGACTATAAATAGACTTTTTTTACCAATGAATGTCTTTTTTTCATATTTTTCGAGGTAT
1 AATAGGTGACTATAAATAGACTTTTTTTACCAATGAATGACTTTTTTTCACATTTCTCAAAGCAT
* * *
2009 ACATTCAATTATAGTCCGTTTAAATGAAAAATATAAAAAAATTTAACTTAAAATCAAATATGAGA
66 ACAATCAATTATAGACCGTTTAAATGAAAAATATAAAAAAATTCAACTTAAAATCAAATATGAGA
* * *
2074 TTATAAAACAACCTAAAGCGAGCGATAAAGCTTTTGAAGGAATGGGTGATAATAAATGGACTTTT
131 TTATAAAACAACCTAAACCGAGCGATAAAGCCTTTGAAGGAATGGGTGACAATAAATGGACTTTT
* * * * * *
2139 CTTGACAGTGAATGTTTTTTTTTTTACGTTTCTCAAGGTAAACATTCGATTATAGTCTGTTTTAT
196 CATGACAATGAATGCTTTTTTCTTTACGTTTCTCAAGGTAAACATTCAATTATAGTCTGTTTTAA
2204 ATAAAAATATAAAAAAAATTCAACTTAAAATNNNNNNNNNNATTATAAAACCATTTAAAGTGAGT
261 ATAAAAATAT-AAAAAAATTCAACTTAAAAT----------ATTATAAAACCATTTAAAGTGAGT
2269 AATAACTCTTTTGCAGG
315 AATAACTCTTTTGCAGG
* *
2286 AATATGTGACTATAAATAGACTTTTTTT-CTCAATGAATGACTTTTTTTACACGTTTCTCAAAGC
1 AATAGGTGACTATAAATAGACTTTTTTTAC-CAATGAATGACTTTTTTT-CACATTTCTCAAAGC
* * * * * *
2350 A-ACCAATCAATTATAGACTGTTTTAATGAAAAATATAAAAACATTCAGCTTAAAAT-AACTTGT
64 ATA-CAATCAATTATAGACCGTTTAAATGAAAAATATAAAAAAATTCAACTTAAAATCAA-ATAT
** ** * *
2413 GAGATTATAAAATC-ATTTAAACCGAGTTATAAGGCCTTTGAAGGAATGTGTGACAATAAATGGA
127 GAGATTATAAAA-CAACCTAAACCGAGCGATAAAGCCTTTGAAGGAATGGGTGACAATAAATGGA
* ********** *
2477 CTTTTCATGCCAATGAATGCTTTTTTCTTNNNNNNNNNNAAGGTAGACATTCAATTATAGTCTGT
191 CTTTTCATGACAATGAATGCTTTTTTCTTTACGTTTCTCAAGGTAAACATTCAATTATAGTCTGT
* * ***** *
2542 TTTAAATAAAAATGTAAAAATATTCAACTTAAAATCAATTATGCGANNNNNNNNNNATTTAAAGC
256 TTTAAATAAAAATATAAAAAAATTCAACTTAAAAT--ATTAT---A-----AAACCATTTAAAGT
** **
2607 GAGTAATAAGGCTTTTAAAGG
311 GAGTAATAACTCTTTTGCAGG
* * * * * * * * *
2628 AATAGGTGTCTATAAATAGACTTTTCTTGCCATTAAATGTATTTTTTTTCATATTTCTCAAGGTA
1 AATAGGTGACTATAAATAGACTTTTTTTACCAATGAATG-ACTTTTTTTCACATTTCTCAAAGCA
* * * * * * * * * * *
2693 GACATTCAATTATTGTCTGTTTTATTAAAAAATGTAAAACAAATTTAACTTAAAATCAATTATGA
65 TACAATCAATTATAGACCGTTTAAATGAAAAATATAAAA-AAATTCAACTTAAAATCAAATATGA
* * ** * * ** * * * *
2758 GAATATAAAATAATTTAAAGCAAGTAATAAGGCTTTTGAAGGAATGGATGACAATAAATAGACTT
129 GATTATAAAACAACCTAAACCGAGCGATAAAGCCTTTGAAGGAATGGGTGACAATAAATGGACTT
* **
2823 TTCTTCTCAATGAATGGCTTTTT
194 TTCATGACAATGAAT-GCTTTTT
2846 CTTCTCAATG
Statistics
Matches: 450, Mismatches: 90, Indels: 38
0.78 0.16 0.07
Matches are distributed among these distances:
334 5 0.01
337 1 0.00
341 1 0.00
342 166 0.37
343 267 0.59
344 10 0.02
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.35
Consensus pattern (331 bp):
AATAGGTGACTATAAATAGACTTTTTTTACCAATGAATGACTTTTTTTCACATTTCTCAAAGCAT
ACAATCAATTATAGACCGTTTAAATGAAAAATATAAAAAAATTCAACTTAAAATCAAATATGAGA
TTATAAAACAACCTAAACCGAGCGATAAAGCCTTTGAAGGAATGGGTGACAATAAATGGACTTTT
CATGACAATGAATGCTTTTTTCTTTACGTTTCTCAAGGTAAACATTCAATTATAGTCTGTTTTAA
ATAAAAATATAAAAAAATTCAACTTAAAATATTATAAAACCATTTAAAGTGAGTAATAACTCTTT
TGCAGG
Found at i:2865 original size:18 final size:19
Alignment explanation
Indices: 2822--2863 Score: 57
Period size: 21 Copynumber: 2.1 Consensus size: 19
2812 TAAATAGACT
*
2822 TTTCTTCTCAATGAATGGC
1 TTTCTTCTCAATGAATGAC
2841 TTTTTCTTCTCAATGAATGAC
1 --TTTCTTCTCAATGAATGAC
2862 TT
1 TT
2864 CTCAAGGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 2 0.10
21 18 0.90
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.48
Consensus pattern (19 bp):
TTTCTTCTCAATGAATGAC
Found at i:3343 original size:171 final size:171
Alignment explanation
Indices: 2958--4215 Score: 893
Period size: 171 Copynumber: 7.4 Consensus size: 171
2948 NNNNNNNNNN
* * * * * *
2958 TTATGAAATTATAAAACAATTTAAAGTGAGTAAAAAGGCTTTTCAAGGAATAGGTGTCTATAAAT
1 TTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAAT
* * * *
3023 AGACTTTTCTTGC-CATTGAAT-TCATTTTTCT-TCATGTTTCTCAAGATAGACATTCAATTATT
66 AGACTTTT-TTTCTCAATGAATGGCATTTTTCTAT-ACGTTTCTCAAG-TAGACATTCAATTA-T
* *
3085 A-TCTATTTTATTAAAAAATGTAAAAAAATTCAACTTAAAATCAA
127 AGTCTGTTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAA
******************* *
3129 TTATGAGATTATAANNNNNNNNNNNNNNNNNNNTAAAGCTTTTGAAGGAATGGGTGACTATAAAT
1 TTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAAT
* * *
3194 AGACTTTTTTTCTCAATGAATGGC-TTTTTCTATACGTTTCTCAAGTCTGTCATTCAATTGTAGT
66 AGACTTTTTTTCTCAATGAATGGCATTTTTCTATACGTTTCTCAAGT-AGACATTCAATTATAGT
*
3258 CTGTTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAA
130 CTGTTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAA
*
3300 TTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATAGGTGACTATAAAT
1 TTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAAT
* * * * * *
3365 AGACTTTTCTTCTTAATGAATGAC-TTTTTCTATACGTTTCTTAAGTCAGTCATTCAATTGTAGT
66 AGACTTTTTTTCTCAATGAATGGCATTTTTCTATACGTTTCTCAAGT-AGACATTCAATTATAGT
* * *
3429 CTGTTTTAA-CAGAAATGCAAAAAAATTCAACTTAAAATCAA
130 CTGTTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAA
* * * ** *
3470 TTATGAGATTATAAAACAGTTCAACGTTAGTAATAAGGCATTTGAAGGAATGGGTGACTATAAAT
1 TTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAAT
* * * * * * *
3535 AGACTTTTTTTGTCAATAAAT-GTAGTTTTCTTCATA--TTTCCTGAGGTAGATATTCAATTATA
66 AGACTTTTTTTCTCAATGAATGGCATTTTTC-T-ATACGTTT-CTCAAGTAGACATTCAATTATA
* * * *
3597 TTCTGTTTT-ATCCAAAAATTTAAAAAAATTCAACTTAAAATTAA
128 GTCTGTTTTAAT-AAAAAATGTAAAAAAATTCAACTTAAAATCAA
* ********** ** *
3641 TTATAAGNNNNNNNNNNAATTTAAAATGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAAT
1 TTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAAT
* * * ** * * * *
3706 AGACCTTTCTTCTTAATGAATTACATTTTT-TACACGTTTCCCCAAGCA-AGCATTTAATTATAG
66 AGACTTTTTTTCTCAATGAATGGCATTTTTCTATACGTTT-CTCAAGTAGA-CATTCAATTATAG
* * * * * *
3769 ACTATTATAATGAAAAATGTAAAATAATTCAGCTTAAAATCAA
129 TCTGTTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAA
* * * * *
3812 TTATGAGATTCA-AAAACCATTTAAAGCGAGTAAAAAGGCTTTTAAAGGAATTGATGACTATAAA
1 TTATGAGATT-ATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAA
* *********** * * * * *
3876 TGGA-TTTTTCTT-GNNNNNNNNNNCTTTTTTCT-TCATGTTTCTCGATGTAGACAATCAATTAC
65 TAGACTTTTT-TTCTCAATGAATGGCATTTTTCTAT-ACGTTTCTC-AAGTAGACATTCAATTAT
* ****
3938 AGTCTGTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAANNNN
127 AGTCTGTTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAA
****** * ** * *
3983 NNNNNNGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTAAAGGAATATGTGTCTATGAAT
1 TTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAAT
* * * *
4048 AGACTTCTCTTGC-CATTAAAT-GCATTTTTCTTCATA--TTTCTCAAGGTAGACATTCAATTAT
66 AGACTT-TTTTTCTCAATGAATGGCATTTTTC-T-ATACGTTTCTCAA-GTAGACATTCAATTAT
* * * * *
4109 TGTGTGTTTTATTAAAAAATATAAAAAAATTCAACTTAAAATTAA
127 AGTCTGTTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAA
* * * * *
4154 TTATAAAATTATAAAATAATTTAAAGCGAGTAGTAAGACTTTTGAAGGAATGGGTGACTATA
1 TTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATA
4216 NNNNNNNNNN
Statistics
Matches: 822, Mismatches: 235, Indels: 60
0.74 0.21 0.05
Matches are distributed among these distances:
169 3 0.00
170 152 0.18
171 646 0.79
172 17 0.02
173 3 0.00
174 1 0.00
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.35
Consensus pattern (171 bp):
TTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAAT
AGACTTTTTTTCTCAATGAATGGCATTTTTCTATACGTTTCTCAAGTAGACATTCAATTATAGTC
TGTTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAA
Found at i:5131 original size:171 final size:168
Alignment explanation
Indices: 4340--5399 Score: 590
Period size: 171 Copynumber: 6.2 Consensus size: 168
4330 NNNNNNNNNN
* * * * * * ** *
4340 TTAATAAAAAATGTAAAACAATTCAACTTAAAATTAATTATGAGATTATAAAACAATTCGAAGTG
1 TTAATCAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATGAAATAATTTAAAGCG
* *
4405 AGTAATAAGGCTTTGGAAAGAATGGGTGACTATAAAT-GAACATTTCTTG-TCAATGAATGCATT
66 AGTAATAAGACTTT-GAAAGAATGGGTGACTATAAATAG-A-TTTTCTTGCT-AATGAATGC-TT
* * **
4468 TTT-TT-TACGTTTCTCGAGGTAGGCATTCAATTAT--T-T-TT
126 TTTCTTCAAC-TTTCTCAAGGTAAACATTCAATTATAGTCTGTT
* * * *
4506 TT-ATCCAAAAATATAAAAAAACTCCACTTAAAAAT-AATTATGAGATTATAAAACAATTTAAAG
1 TTAAT-CAAAAATATAAAAAAATTCAACTT-AAAATCAATTATGAGATTATGAAATAATTTAAAG
* ********* * ** * *
4569 CAAGNNNNNNNNNNTTTGAAGGAATGATTGACTATAAATGGACTTTGCTT-CTCAATGAATGACT
64 CGAG-TAATAAGACTTTGAAAGAATGGGTGACTATAAATAGA-TTTTCTTGCT-AATGAATG-CT
* * *
4633 TTTT-TT-ACACATTTCACAAGG-AAAGCATTCAATTATAGACTATT
125 TTTTCTTCA-AC-TTTCTCAAGGTAAA-CATTCAATTATAGTCTGTT
* * * * ** ********** * ** *
4677 TTAATAAAAAATGTAAAACAATTTAGGTTNNNNNNNNNNATGAGATTATAAAACCATTTAAAGTG
1 TTAATCAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATGAAATAATTTAAAGCG
* * * * *
4742 AGTAATGACG-CTTTTAAAGGAGTAGGTGACTATAAATAGACTTTTCTTGCCAATGAATGCTTTT
66 AGTAAT-AAGACTTTGAAA-GAATGGGTGACTATAAATAGA-TTTTCTTGCTAATGAATGC-TTT
********** * *
4806 TTCTTNNNNNNNNNNAAGGTAGACATTCAATTATAGTATGTT
127 TTCTTCAACTTTCTCAAGGTAAACATTCAATTATAGTCTGTT
* * * ***
4848 TTAATAAAAAATGT-AAAAAATTGAACTTAAAATCAATTATGAGATTATGAAATAATTTAAATTA
1 TTAATCAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATGAAATAATTTAAAGCG
* * ** * * * *
4912 AGTAATAAGACTTTTAAAGGAATAGGTGTTTGTAAATGGACTTTTCTTGCCATTGAATGCTCTTT
66 AGTAATAAGACTTTGAAA-GAATGGGTGACTATAAATAGA-TTTTCTTGCTAATGAATGCT-TTT
* *
4977 TCTTCAACTTTCTAAAGGTAAACATTCAATTATACTCTGTT
128 TCTTCAACTTTCTCAAGGTAAACATTCAATTATAGTCTGTT
* * *
5018 TTAAGCAAAAATATAAAAAAATTCAAGTTAAAATTAATTATGAGATTATGAAATAATTTAAAGCG
1 TTAATCAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATGAAATAATTTAAAGCG
** *
5083 AGTAATATTACTTTCGAAAGAATGGGTGACTATAAATAGATTTTTCTTGCTAGTGAATGCGTTTT
66 AGTAATAAGACTTT-GAAAGAATGGGTGACTATAAATAGA-TTTTCTTGCTAATGAATGC-TTTT
* * *
5148 TCTTC-ACGTTTCTCATGGTAGACATTCAATTATTGTCTGTT
128 TCTTCAAC-TTTCTCAAGGTAAACATTCAATTATAGTCTGTT
* ********** * * *
5189 TT-ATCCAAAAATATGAAAAAATTCAACTTANNNNNNNNNNTGAGATTATAAAACAACTTAAAGC
1 TTAAT-CAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATGAAATAATTTAAAGC
** ** * *
5253 GAGTAATAAGGTTTTTGATGGAATGGGTGACTATAAGTAGATTTTCTTTCTTAATGAATGGCTTT
65 GAGTAATAA-GACTTTGAAAGAATGGGTGACTATAAATAGATTTTCTTGC-TAATGAAT-GCTTT
** * * *
5318 TTCTTCATGTTTTTCAAGGCAAACATTGAATTATAGTCTGTT
127 TTCTTCAACTTTCTCAAGGTAAACATTCAATTATAGTCTGTT
* *
5360 TTAATTAAAAATATAAAATAATTCAACTTAAAATCAATTA
1 TTAATCAAAAATATAAAAAAATTCAACTTAAAATCAATTA
Statistics
Matches: 671, Mismatches: 190, Indels: 61
0.73 0.21 0.07
Matches are distributed among these distances:
165 2 0.00
166 93 0.14
167 31 0.05
169 3 0.00
170 141 0.21
171 383 0.57
172 18 0.03
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.35
Consensus pattern (168 bp):
TTAATCAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATGAAATAATTTAAAGCG
AGTAATAAGACTTTGAAAGAATGGGTGACTATAAATAGATTTTCTTGCTAATGAATGCTTTTTCT
TCAACTTTCTCAAGGTAAACATTCAATTATAGTCTGTT
Done.