Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400691.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3875.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3385
ACGTcount: A:0.28, C:0.11, G:0.09, T:0.32

Warning! 728 characters in sequence are not A, C, G, or T


Found at i:3360 original size:171 final size:170

Alignment explanation


    Indices: 2969--3385  Score: 381
    Period size: 170  Copynumber: 2.4  Consensus size: 170

       2959 NNTCTACCTT

                  *            **                   *     *                * 
       2969 AAGAAACGTGAAGAAAAAAGCATTCATTGGCAAGAAAAGTCCATTTTTAGTCTCTCATTTCTTTA
          1 AAGAAATGTGAAGAAAAAAATATTCATTGGCAAGAAAAGTTCATTTATAGTCTCTCATTTCTTCA

                                          *                          *       
       3034 AAAGCCTTATTACTCACTTTAAATAGTTTTCTAATCTCAAATTTGATTTTAAGTTGACTTTTTTA
         66 AAAGCCTTATTACTCACTTTAAATAGTTTTATAATCTCAAATTTGATTTTAAGTTGAATTTTTTA

                   **      *    *            *      
       3099 TATTTTTTGTTAAAATAGACTATAATTGAATGTTTGCCTC
        131 TATTTTTCATTAAAACAGACCATAATTGAATGTGTGCCTC

                      *       **    *   * *        *    *                    
       3139 AAGAAATGTGTAGAAAAACCTATTTATTTGTAAGAAAA-ATCTACTTATAGTCTCTCATTTCTTC
          1 AAGAAATGTGAAGAAAAAAATATTCATTGGCAAGAAAAGTTC-ATTTATAGTCTCTCATTTCTTC

                 *   *      **       *              **********               
       3203 AAAAGTCTTGTTACTCGTTTTAAATGGTTTTATAATCTCANNNNNNNNNNTAAGTTGAATTGTTT
         65 AAAAGCCTTATTACTCACTTTAAATAGTTTTATAATCTCAAATTTGATTTTAAGTTGAATT-TTT

                               *   *                    
       3268 TATATTTTTCATTAAAACATACCCTAATTG-AT-TGTGCATCTC
        129 TATATTTTTCATTAAAACAGACCATAATTGAATGTGTGC--CTC

            *                    *                              * *    *   * 
       3310 GAGAAATGTGAAGAAAAAAATGTTCATTGGCAAGAAAAGTTCATTTATAGTCACCCATTCCTTGA
          1 AAGAAATGTGAAGAAAAAAATATTCATTGGCAAGAAAAGTTCATTTATAGTCTCTCATTTCTTCA

                       
       3375 AAAGCCTTATT
         66 AAAGCCTTATT


Statistics
Matches: 189,  Mismatches: 53, Indels: 9
        0.75            0.21        0.04

Matches are distributed among these distances:
 169    5  0.03
 170   95  0.50
 171   87  0.46
 172    2  0.01

ACGTcount: A:0.34, C:0.13, G:0.12, T:0.38


Consensus pattern (170 bp):   
AAGAAATGTGAAGAAAAAAATATTCATTGGCAAGAAAAGTTCATTTATAGTCTCTCATTTCTTCA
AAAGCCTTATTACTCACTTTAAATAGTTTTATAATCTCAAATTTGATTTTAAGTTGAATTTTTTA
TATTTTTCATTAAAACAGACCATAATTGAATGTGTGCCTC
Done.