Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400700.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3883.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4206
ACGTcount: A:0.11, C:0.38, G:0.37, T:0.12

Warning! 100 characters in sequence are not A, C, G, or T


Found at i:187 original size:15 final size:15

Alignment explanation


    Indices: 167--201  Score: 70
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        157 ACGACGACGG

                           
        167 CCCCGTCCCCCGCGA
          1 CCCCGTCCCCCGCGA

                           
        182 CCCCGTCCCCCGCGA
          1 CCCCGTCCCCCGCGA

                 
        197 CCCCG
          1 CCCCG

        202 CCGGCCACGA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   20  1.00

ACGTcount: A:0.06, C:0.69, G:0.20, T:0.06


Consensus pattern (15 bp):   
CCCCGTCCCCCGCGA
Done.