Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400701.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3883.1, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2655
ACGTcount: A:0.14, C:0.39, G:0.34, T:0.13

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:2624 original size:23 final size:24

Alignment explanation


    Indices: 2562--2637  Score: 83
    Period size: 23  Copynumber: 3.3  Consensus size: 24

       2552 ACTGACCTAC

                                     
       2562 TGGGGAGAAC-CGCTGGCCGTCCA-
          1 TGGGGAGAACTCGCTGGCCG-CCAG

                                     
       2585 TGGGGAG--CTCTGCTGGCCGCCAG
          1 TGGGGAGAACTC-GCTGGCCGCCAG

                                    
       2608 TGGGGAGAACTCG-TGGCCGCC-G
          1 TGGGGAGAACTCGCTGGCCGCCAG

                    
       2630 TCGGGGAG
          1 T-GGGGAG

       2638 GAACCGGTGA


Statistics
Matches: 47,  Mismatches: 0, Indels: 12
        0.80            0.00        0.20

Matches are distributed among these distances:
  21    1  0.02
  22    6  0.13
  23   36  0.77
  24    1  0.02
  25    3  0.06

ACGTcount: A:0.13, C:0.28, G:0.45, T:0.14


Consensus pattern (24 bp):   
TGGGGAGAACTCGCTGGCCGCCAG
Done.