Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400705.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3886.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1752
ACGTcount: A:0.30, C:0.10, G:0.11, T:0.27

Warning! 396 characters in sequence are not A, C, G, or T


Found at i:1205 original size:170 final size:170

Alignment explanation


    Indices: 874--1247  Score: 424
    Period size: 170  Copynumber: 2.2  Consensus size: 170

        864 NNNNNNNNNN

                                              *                           *  
        874 ATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTCCAAATAAAAGGGTTTTTGTA
          1 ATAAGGCTTTTGAAGGAATGGGTGACTATAAATGAACTTTTCTTCCAAATAAAAGGGTTTTTCTA

                          *                 *                          *  ***
        939 CACATTTCCCCAGGTAAGCATTCAATTATAGTTTGTTTTAATGAAAAATATAAAAAATTGAANNN
         66 CACATTTCCCCAGGCAAGCATTCAATTATAGTCTGTTTTAATGAAAAATATAAAAAATTCAACTT

            *******     *  *   *    *         *     
       1004 NNNNNNNATTATGAGGTTATAAAACCATTTAAAGTGAATA
        131 CAATTCAATTATAAGATTACAAAAACATTTAAAGCGAATA

                *               * *  *                   *       *           
       1044 ATAAAGCTTTTGAAGGAATGAGAGAATATAAATGAACTTTTCTTCTAAATAAATGGGTTTTTCTA
          1 ATAAGGCTTTTGAAGGAATGGGTGACTATAAATGAACTTTTCTTCCAAATAAAAGGGTTTTTCTA

              **    ***        *  *                     *    *               
       1109 CAGGTTTCTTGAGGCAAGCGTTTAATTATAGTCTGTTTTAATGAGAAATGTAAAAAATTCAACTT
         66 CACATTTCCCCAGGCAAGCATTCAATTATAGTCTGTTTTAATGAAAAATATAAAAAATTCAACTT

                                                 *  
       1174 CAATTCAATTATAAGATTACAAAAACATTTAAAGCGAGTA
        131 CAATTCAATTATAAGATTACAAAAACATTTAAAGCGAATA

                                              
       1214 ATAAGGCTTTTGAAGGAATGGGTGACTATAAATG
          1 ATAAGGCTTTTGAAGGAATGGGTGACTATAAATG

       1248 NNNNNNNNNN


Statistics
Matches: 164,  Mismatches: 40, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
 170  164  1.00

ACGTcount: A:0.38, C:0.09, G:0.17, T:0.33


Consensus pattern (170 bp):   
ATAAGGCTTTTGAAGGAATGGGTGACTATAAATGAACTTTTCTTCCAAATAAAAGGGTTTTTCTA
CACATTTCCCCAGGCAAGCATTCAATTATAGTCTGTTTTAATGAAAAATATAAAAAATTCAACTT
CAATTCAATTATAAGATTACAAAAACATTTAAAGCGAATA
Done.