Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400710.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3890.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 780

Length: 1301
ACGTcount: A:0.14, C:0.04, G:0.04, T:0.13

Warning! 835 characters in sequence are not A, C, G, or T


Found at i:74 original size:19 final size:18

Alignment explanation


    Indices: 37--74  Score: 51
    Period size: 19  Copynumber: 2.1  Consensus size: 18

         27 ACAATTTTGA

                              
         37 TTTAAAAATATTTATAAG
          1 TTTAAAAATATTTATAAG

                                
         55 TTTATAAAATCATTTA-AAG
          1 TTTA-AAAAT-ATTTATAAG

             
         74 T
          1 T

         75 GAGTAACAAG


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  18    4  0.22
  19    9  0.50
  20    5  0.28

ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45


Consensus pattern (18 bp):   
TTTAAAAATATTTATAAG
Done.