Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400711.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3891.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 864

Length: 1441
ACGTcount: A:0.19, C:0.08, G:0.07, T:0.20

Warning! 680 characters in sequence are not A, C, G, or T


Found at i:1439 original size:171 final size:167

Alignment explanation


    Indices: 1083--1441  Score: 389
    Period size: 171  Copynumber: 2.1  Consensus size: 167

       1073 NNNNNNNNNT

                                                *     *                      
       1083 ATAATTGATTTTAAGTTGAATTTTTTTACATTTTTTGTTAAAGAAGACTATAATTAAATGCTTAC
          1 ATAATTGATTTTAAGTTGAATTTTTTTACATTTTTTCTTAAACAAGACTATAATTAAATGCTTA-

              **              * *            *   *       **                  
       1148 CTTGAGAAAATGCAAAAAGCGATTCAGTGAGAAGAAATGTCCATTTGTAGTCACCCATTCCTTCA
         65 CTCAAGAAAATGCAAAAAACCATTCAGTGAGAAAAAAAGTCCATTCATAGTCACCCATTCCTTCA

                           **  *   **********     
       1213 AAAGGCTTATTACTCGGTTTAAANNNNNNNNNNATCTC
        130 AAAGGCTTATTACTCACTTCAAATGGTTTTATAATCTC

                  *                                                          
       1251 ATAATTTATTTTAAGTTGAATTTTTTTACATTTTTTCTTACAACAAG-CTATAATTAAATGACTG
          1 ATAATTGATTTTAAGTTGAATTTTTTTACATTTTTTCTTA-AACAAGACTATAATTAAATG-CT-

                                           *              *           *     *
       1315 T-CTCAAGAAACATGCAAAAAAAACCATTCATTGAGAAAAAAAGTCTATTCATAGTCAGCCATTT
         63 TACTCAAGAAA-ATGC--AAAAAACCATTCAGTGAGAAAAAAAGTCCATTCATAGTCACCCATTC

                                                       
       1379 CTTCAAAAGGCTTATTACTCACTTCAAATGGTTTTATAATCTC
        125 CTTCAAAAGGCTTATTACTCACTTCAAATGGTTTTATAATCTC

                                
       1422 ATAATTGATTTTAAGTTGAA
          1 ATAATTGATTTTAAGTTGAA


Statistics
Matches: 156,  Mismatches: 29, Indels: 9
        0.80            0.15        0.05

Matches are distributed among these distances:
 168   58  0.37
 169   11  0.07
 170    1  0.01
 171   86  0.55

ACGTcount: A:0.35, C:0.14, G:0.12, T:0.36


Consensus pattern (167 bp):   
ATAATTGATTTTAAGTTGAATTTTTTTACATTTTTTCTTAAACAAGACTATAATTAAATGCTTAC
TCAAGAAAATGCAAAAAACCATTCAGTGAGAAAAAAAGTCCATTCATAGTCACCCATTCCTTCAA
AAGGCTTATTACTCACTTCAAATGGTTTTATAATCTC
Done.