Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400719.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_390.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 886

Length: 1477
ACGTcount: A:0.19, C:0.07, G:0.07, T:0.19

Warning! 711 characters in sequence are not A, C, G, or T


Found at i:304 original size:171 final size:170

Alignment explanation


    Indices: 17--385  Score: 510
    Period size: 171  Copynumber: 2.2  Consensus size: 170

          7 CCTAGGCAAG

                                         **                *              *  
         17 CATTCAATTATAGTCTGTTTTAACCAAAACTGTGAAAAAAGTTATCTTAAAATCAATTATGATAT
          1 CATTCAATTATAGTCTGTTTTAACCAAAAAAGTGAAAAAAGTTATCTCAAAATCAATTATGAGAT

                                                  *                          
         82 TATAAAACAATTCAAAACGAGTAATAAGGCTTTTAAAGTAATAACAGACTATAAATGGACTTTTC
         66 TATAAAACAATTCAAAACGAGTAATAAGGCTTTTAAAGGAATAACAGACTATAAATGGACTTTTC

                                      **               
        147 TTGCCAATGAATACTTGTTTCTTT-AGGTTTCTCG-GTGTAAA
        131 TTGCCAATGAATACTT-TTT-TTTCACATTTCTCGAG-GTAAA

            *              *                        *                        
        188 TATTCAATTATAGTCCGTTTTAACCAAAAAAGTGAAAAAATTTATCTCAAAATCAATTATGAGAT
          1 CATTCAATTATAGTCTGTTTTAACCAAAAAAGTGAAAAAAGTTATCTCAAAATCAATTATGAGAT

                        * * *                 * *                    *       
        253 TATAAAACAATTTAGAGCGAGTAATAAGGCTTTTGAGGGAAT-ACGAGACTATAAATTGACTTTT
         66 TATAAAACAATTCAAAACGAGTAATAAGGCTTTTAAAGGAATAAC-AGACTATAAATGGACTTTT

                      *  *                         * 
        317 CTTGCCAATGTATGCTTTTTTTTCACATTTCTCGAGGTAGA
        130 CTTGCCAATGAATACTTTTTTTTCACATTTCTCGAGGTAAA

                                        
        358 CATTCAATTATAGTCTGTTTTAACCAAA
          1 CATTCAATTATAGTCTGTTTTAACCAAA

        386 NNNNNNNNNN


Statistics
Matches: 174,  Mismatches: 21, Indels: 7
        0.86            0.10        0.03

Matches are distributed among these distances:
 169    3  0.02
 170   43  0.25
 171  128  0.74

ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36


Consensus pattern (170 bp):   
CATTCAATTATAGTCTGTTTTAACCAAAAAAGTGAAAAAAGTTATCTCAAAATCAATTATGAGAT
TATAAAACAATTCAAAACGAGTAATAAGGCTTTTAAAGGAATAACAGACTATAAATGGACTTTTC
TTGCCAATGAATACTTTTTTTTCACATTTCTCGAGGTAAA
Done.