Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400757.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3936.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1798
ACGTcount: A:0.29, C:0.09, G:0.10, T:0.28

Warning! 427 characters in sequence are not A, C, G, or T


Found at i:1717 original size:114 final size:104

Alignment explanation


    Indices: 1562--1769  Score: 190
    Period size: 114  Copynumber: 1.9  Consensus size: 104

       1552 GAGTGACTAG

                             *                                               
       1562 AAATAGACTTTTCTTCTTAATGAATGACTTTTTCTATATATTT-TCCGAGGTAGACAATCAATTA
          1 AAATAGACTTTTCTTCTCAATGAATGACTTTTTCTATATATTTCT-CGAGGTAGACAATCAATTA

                *                 *                            
       1626 TAGTCTGTTTTAA-CAAAAAATGTAAAACAATTCNNNNNNNNNNTGACTCT
         65 TAGTATGTTTTAATC-AAAAATATAAAACAATTC----------TGACTCT

                           *                    *                   * * *    
       1676 AAATAGACTTTTCTTGTCAATGAATG-CTTGTTT-TTTCATATTTCTCGAGGTAGATATTTAATT
          1 AAATAGACTTTTCTTCTCAATGAATGACTT-TTTCTAT-ATATTTCTCGAGGTAGACAATCAATT

                                           
       1739 ATAGTATGTTTTAATCAAAAATATAAAACAA
         64 ATAGTATGTTTTAATCAAAAATATAAAACAA

       1770 ATTCAACTTA


Statistics
Matches: 82,  Mismatches: 8, Indels: 8
        0.84            0.08        0.08

Matches are distributed among these distances:
 113    5  0.06
 114   75  0.91
 115    2  0.02

ACGTcount: A:0.34, C:0.12, G:0.11, T:0.39


Consensus pattern (104 bp):   
AAATAGACTTTTCTTCTCAATGAATGACTTTTTCTATATATTTCTCGAGGTAGACAATCAATTAT
AGTATGTTTTAATCAAAAATATAAAACAATTCTGACTCT
Done.