Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400771.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3949.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1741
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.28

Warning! 383 characters in sequence are not A, C, G, or T


Found at i:1010 original size:170 final size:160

Alignment explanation


    Indices: 815--1169  Score: 291
    Period size: 171  Copynumber: 2.1  Consensus size: 160

        805 TTAAAAAACT

                              *                *                             
        815 ATTTAAAGCGAGTAATAAGGCTTTT-AAAGACATGGGTGAATAGAAATGGACTTTCT-TACCAAT
          1 ATTTAAAGCGAGTAATAAAGCTTTTAAAAG-CATGAGTGAATAGAAATGGACTTT-TATACCAAT

                                         *                 *                 
        878 GGATAACTTTTTCTTCACGTTTCTTAAGGTAGACATTCAATTATAATCTCTTTTAATAAAAAATA
         64 GGATAACTTTTTCTTCACGTTTCTTAAGGCAGACATTCAATTATAATATCTTTTAATAAAAAATA

                                                      
        943 TAAAAAAATTTNNNNNNNNNNCAATTATGAGCTTATAAAATC
        129 TAAAAAAATTT----------CAATTATGAGCTTATAAAATC

                 *   *                                *     *       *********
        985 ATTTACAGCTAGTAATAAAGCTTTTAAAAGCATGAGTGAATATAAATGTACTTTTNNNNNNNNNN
          1 ATTTAAAGCGAGTAATAAAGCTTTTAAAAGCATGAGTGAATAGAAATGGACTTTT-ATACCAATG

                *                     *     **              *                
       1050 GATATCTTTTTCTTCACGTTTCTTAATGCAGATTTTCAATTATAATATGTTTTAATAAAAAATAT
         65 GATAACTTTTTCTTCACGTTTCTTAAGGCAGACATTCAATTATAATATCTTTTAATAAAAAATAT

                                                     
       1115 AAAAAAAATTAGATTAAAATCAATTATGAGCTTATAAAATC
        130 ---AAAAA--A-ATT----TCAATTATGAGCTTATAAAATC

                          
       1156 ATTTAAAGCGAGTA
          1 ATTTAAAGCGAGTA

       1170 TTNNNNNNNN


Statistics
Matches: 149,  Mismatches: 23, Indels: 25
        0.76            0.12        0.13

Matches are distributed among these distances:
 169    1  0.01
 170   43  0.29
 171   95  0.64
 174    5  0.03
 176    1  0.01
 177    3  0.02
 181    1  0.01

ACGTcount: A:0.38, C:0.10, G:0.11, T:0.35


Consensus pattern (160 bp):   
ATTTAAAGCGAGTAATAAAGCTTTTAAAAGCATGAGTGAATAGAAATGGACTTTTATACCAATGG
ATAACTTTTTCTTCACGTTTCTTAAGGCAGACATTCAATTATAATATCTTTTAATAAAAAATATA
AAAAAATTTCAATTATGAGCTTATAAAATC
Done.