Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400776.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3953.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1843
ACGTcount: A:0.25, C:0.09, G:0.08, T:0.25

Warning! 595 characters in sequence are not A, C, G, or T


Found at i:591 original size:172 final size:169

Alignment explanation


    Indices: 413--875  Score: 525
    Period size: 171  Copynumber: 2.7  Consensus size: 169

        403 NNNNNNNGAA

                                                        *     *          *   
        413 TAGAATTGAATGTCTACCTTGAGAAACATGAAGAAAAAAGTATTTATTGGAAAGAAAAGTCCATT
          1 TAGAATTGAATGTCTACCTTGAGAAACATGAAGAAAAAAGTATTCATTGGCAAGAAAAGTCTATT

                *         *            *                        *******      
        478 TATAATCACCCATATCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTNNNNNNNNNNAAATTG
         66 TATAGTCACCCATACCTTCAAAAGCCTCATTACTCGCTTTAAATGGTTT---TATAATAAAATTG

                                                      
        543 ATTTAAATTTGAATTCTTTGAACAATTCTAGTTAAAACATAC
        128 ATTTAAATTTGAATTCTTTGAACAATTCTAGTTAAAACATAC

                              * **       *                                   
        585 TAGAATTGAATGTCTACCATCCGAAACATAAAGAAAAAAGTATTCATTGGCAAGAAAAGTCTA-T
          1 TAGAATTGAATGTCTACCTTGAGAAACATGAAGAAAAAAGTATTCATTGGCAAGAAAAGTCTATT

                      *                                   *             *****
        649 TATAGTCTA-TCATACCTTCAAAAGCCTCATTACTCGCTTTAAATGATTTTATAATANNNNNNNN
         66 TATAGTC-ACCCATACCTTCAAAAGCCTCATTACTCGCTTTAAATGGTTTTATAATA---AAATT

            **    *              *   *  *              
        713 NNTTTACATTTGAATTCTTTGCACATTTTTAGTTAAAACATAC
        127 GATTTAAATTTGAATTCTTTGAACAATTCTAGTTAAAACATAC

                                 *                  *                  **    
        756 TAGAATTGAATGTCTACCTTGGGAAACATGAAGAAAAAAGAATTCATTGGCAAGAAAAGGGTATT
          1 TAGAATTGAATGTCTACCTTGAGAAACATGAAGAAAAAAGTATTCATTGGCAAGAAAAGTCTATT

                                         *                    *    
        821 TATAGTCACCCATACCTTCAAAAGCCTCACTACTCGCTTTAAATGGTTTTGTAAT
         66 TATAGTCACCCATACCTTCAAAAGCCTCATTACTCGCTTTAAATGGTTTTATAAT

        876 TCCATAATTG


Statistics
Matches: 244,  Mismatches: 41, Indels: 12
        0.82            0.14        0.04

Matches are distributed among these distances:
 171  137  0.56
 172  107  0.44

ACGTcount: A:0.37, C:0.15, G:0.13, T:0.32


Consensus pattern (169 bp):   
TAGAATTGAATGTCTACCTTGAGAAACATGAAGAAAAAAGTATTCATTGGCAAGAAAAGTCTATT
TATAGTCACCCATACCTTCAAAAGCCTCATTACTCGCTTTAAATGGTTTTATAATAAAATTGATT
TAAATTTGAATTCTTTGAACAATTCTAGTTAAAACATAC

Done.