Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400780.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3957.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 616

Length: 1028
ACGTcount: A:0.29, C:0.11, G:0.13, T:0.31

Warning! 164 characters in sequence are not A, C, G, or T


Found at i:706 original size:125 final size:125

Alignment explanation


    Indices: 480--721  Score: 312
    Period size: 125  Copynumber: 1.9  Consensus size: 125

        470 AAAGTGAGTA

                                                        *                    
        480 ATAAGGCTTTTAAAGAAATGGGTGACTATAAATGGTCTTTTCTTGCCAATGAATGCCTTTTTCAT
          1 ATAAGGCTTTTAAAGAAATGGGTGACTATAAATGGTCTTTTCTTACCAATGAATGCCTTTTTCAT

               **                         *            *                
        545 TATGGTTCTCAAGGTAGACATTCAATTATAGGCTGTTTTAACCTAAAATGTAAAAATGTG
         66 TATCATTCTCAAGGTAGACATTCAATTATAAGCTGTTTTAACCAAAAATGTAAAAATGTG

                          * *                                       * *      
        605 ATAAGGCTTTTGAAGGTAA-GGGTGACTATAAATTGG-CTTTTCTTACCAATGAATTCTTTTTTC
          1 ATAAGGCTTTT-AAAGAAATGGGTGACTATAAA-TGGTCTTTTCTTACCAATGAATGCCTTTTTC

                                           *   *         *          
        668 -TTCA-CATCTCTCAAGGTAGACATTCAATTCTAATCTGTTTTAATCAAAAATGTA
         64 ATT-ATCAT-TCTCAAGGTAGACATTCAATTATAAGCTGTTTTAACCAAAAATGTA

        722 CAAGGAANNN


Statistics
Matches: 101,  Mismatches: 12, Indels: 8
        0.83            0.10        0.07

Matches are distributed among these distances:
 124    3  0.03
 125   90  0.89
 126    8  0.08

ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38


Consensus pattern (125 bp):   
ATAAGGCTTTTAAAGAAATGGGTGACTATAAATGGTCTTTTCTTACCAATGAATGCCTTTTTCAT
TATCATTCTCAAGGTAGACATTCAATTATAAGCTGTTTTAACCAAAAATGTAAAAATGTG
Done.