Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400791.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3967.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1975
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.23

Warning! 905 characters in sequence are not A, C, G, or T


Found at i:658 original size:43 final size:42

Alignment explanation


    Indices: 558--641  Score: 127
    Period size: 43  Copynumber: 2.0  Consensus size: 42

        548 TTTACTTAAT

                   *                                   
        558 TTAATTTCTTATTTCTTGTTTTCAAACAACTTTCTTCTAGAAA
          1 TTAATTTTTTATTTCTTGTTTTCAAACAAC-TTCTTCTAGAAA

                                     *                
        601 TTAATTTTTTATTTCTTGTTTTCAATCAAC-T-TTCTAGAAA
          1 TTAATTTTTTATTTCTTGTTTTCAAACAACTTCTTCTAGAAA

             
        641 T
          1 T

        642 GATCTTTTGG


Statistics
Matches: 39,  Mismatches: 2, Indels: 3
        0.89            0.05        0.07

Matches are distributed among these distances:
  40   10  0.26
  41    1  0.03
  43   28  0.72

ACGTcount: A:0.27, C:0.14, G:0.05, T:0.54


Consensus pattern (42 bp):   
TTAATTTTTTATTTCTTGTTTTCAAACAACTTCTTCTAGAAA
Done.