Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397608.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4332.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4843
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34

Warning! 20 characters in sequence are not A, C, G, or T


Found at i:3402 original size:29 final size:31

Alignment explanation


    Indices: 3347--3420  Score: 93
    Period size: 29  Copynumber: 2.5  Consensus size: 31

       3337 AATTATTAAT

                              *            
       3347 TATAAAAACTTATTTGACTCAAAATAAAA-A
          1 TATAAAAACTTATTTGACACAAAATAAAAGA

                                  *         
       3377 TATAAAAACTTGA-TTGA-ACATAATAAAAGA
          1 TATAAAAACTT-ATTTGACACAAAATAAAAGA

                           
       3407 -ATAAAAACTTATTT
          1 TATAAAAACTTATTT

       3421 AAATTTTTCA


Statistics
Matches: 39,  Mismatches: 2, Indels: 7
        0.81            0.04        0.15

Matches are distributed among these distances:
  28    1  0.03
  29   21  0.54
  30   16  0.41
  31    1  0.03

ACGTcount: A:0.55, C:0.08, G:0.05, T:0.31


Consensus pattern (31 bp):   
TATAAAAACTTATTTGACACAAAATAAAAGA
Done.