Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400804.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3979.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 852

Length: 1421
ACGTcount: A:0.09, C:0.04, G:0.03, T:0.09

Warning! 1074 characters in sequence are not A, C, G, or T


Found at i:788 original size:26 final size:26

Alignment explanation


    Indices: 752--806  Score: 92
    Period size: 26  Copynumber: 2.1  Consensus size: 26

        742 TATTTATAGC

                                      
        752 CTCCCAATCCTTCAACAGTCTTTTTA
          1 CTCCCAATCCTTCAACAGTCTTTTTA

                  *        *          
        778 CTCCCAGTCCTTCAATAGTCTTTTTA
          1 CTCCCAATCCTTCAACAGTCTTTTTA

               
        804 CTC
          1 CTC

        807 ATTCTAAATG


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.20, C:0.35, G:0.05, T:0.40


Consensus pattern (26 bp):   
CTCCCAATCCTTCAACAGTCTTTTTA
Done.