Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400817.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3990.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 608

Length: 1014
ACGTcount: A:0.12, C:0.07, G:0.06, T:0.13

Warning! 644 characters in sequence are not A, C, G, or T


Found at i:944 original size:32 final size:32

Alignment explanation


    Indices: 902--964  Score: 90
    Period size: 32  Copynumber: 2.0  Consensus size: 32

        892 NNNNNNNNTT

                                            
        902 ATATCACCTAAATAATTCATAAACTATTTTTC
          1 ATATCACCTAAATAATTCATAAACTATTTTTC

                 *        *     * *        
        934 ATATCGCCTAAATACTTCATGAGCTATTTTT
          1 ATATCACCTAAATAATTCATAAACTATTTTT

        965 TTTGATTTGG


Statistics
Matches: 27,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  32   27  1.00

ACGTcount: A:0.35, C:0.19, G:0.05, T:0.41


Consensus pattern (32 bp):   
ATATCACCTAAATAATTCATAAACTATTTTTC
Done.