Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400818.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3991.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2229
ACGTcount: A:0.23, C:0.07, G:0.09, T:0.23

Warning! 827 characters in sequence are not A, C, G, or T


Found at i:727 original size:171 final size:170

Alignment explanation


    Indices: 387--781  Score: 452
    Period size: 171  Copynumber: 2.3  Consensus size: 170

        377 NNNNNNNNNN

                     *                                *                     *
        387 ATTCAAATTTAAATCAATTTTGAGATTATAAAACTATTTAAAATGAGTAATAAAAGTTTTAAAGG
          1 ATTCAAATTAAAATCAATTTTGAGATTATAAAACTATTTAAAGTGAGTAAT-AAAGTTTTAAAGA

                *                              **              *      *      
        452 AATGTGTGACTATAAATGGACTTTTTGTGCCAATGGTTACCATTTTCTTCATGTTTCTCAAGCTA
         65 AATGGGTGACTATAAATGGACTTTTTGTGCCAATGAATACCATTTTCTTCAGGTTTCTAAAGCTA

                               **********   *        
        517 AACATTCAATTATAATATGNNNNNNNNNNAAATGTAAAAAA
        130 AACATTCAATTATAATATGTTCTAACCTAAAAGGTAAAAAA

               *  *                      *               *       *           
        558 ATTTAACTTAAAATCAATTTTGAGATTATGAAACTATTTAAAGTGCGTAATAAGGCTTTTAAAGA
          1 ATTCAAATTAAAATCAATTTTGAGATTATAAAACTATTTAAAGTGAGTAATAAAG-TTTTAAAGA

                           *               *          *       *              
        623 AATGGGTGACTATAAGTGGACTTTTCT-TGCGAATGAATACCTTTTTCTTTAGGTTTCTAAAGGC
         65 AATGGGTGACTATAAATGGACTTTT-TGTGCCAATGAATACCATTTTCTTCAGGTTTCTAAA-GC

                              *                        
        687 -AAACATTCAATTATAATCTGTTCTAACCTAAAAGGTAAAAAA
        128 TAAACATTCAATTATAATATGTTCTAACCTAAAAGGTAAAAAA

                               *    *         *                  
        729 ATTCAAATTAAAATCAATTATGAGGTTATAAAACCATTTAAAGTGAGTAATAA
          1 ATTCAAATTAAAATCAATTTTGAGATTATAAAACTATTTAAAGTGAGTAATAA

        782 NNNNNNNNNN


Statistics
Matches: 185,  Mismatches: 36, Indels: 6
        0.81            0.16        0.03

Matches are distributed among these distances:
 170    3  0.02
 171  179  0.97
 172    3  0.02

ACGTcount: A:0.39, C:0.10, G:0.13, T:0.35


Consensus pattern (170 bp):   
ATTCAAATTAAAATCAATTTTGAGATTATAAAACTATTTAAAGTGAGTAATAAAGTTTTAAAGAA
ATGGGTGACTATAAATGGACTTTTTGTGCCAATGAATACCATTTTCTTCAGGTTTCTAAAGCTAA
ACATTCAATTATAATATGTTCTAACCTAAAAGGTAAAAAA
Done.