Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400822.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3996.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 837

Length: 1396
ACGTcount: A:0.28, C:0.09, G:0.10, T:0.27

Warning! 356 characters in sequence are not A, C, G, or T


Found at i:671 original size:170 final size:170

Alignment explanation


    Indices: 98--673  Score: 456
    Period size: 170  Copynumber: 3.4  Consensus size: 170

         88 NNNNTAATAA

                         *    *   *                *                 *       
         98 AAAAATATAAAAACAATTAAAACTAAAATCAATTATGAGCTTATAAAATCATTTAAATCGAGTAA
          1 AAAAAT-TAAAAAAAATTCAAATTAAAATCAATTATGAGGTTATAAAATCATTTAAAGCGAGTAA

                 *                         *           *        *            
        163 TAAGGTTTTTGAAGGCATGGGTGACTATAAAAGGACTTTTCTTACCAATGGAAAT-ATTTTTCTT
         65 TAAGGCTTTTGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGGATATCA-TTTTCTT

              **********                    *         
        227 CANNNNNNNNNNGGCAAACATTCAATTATAATCTATTTTAAT
        129 CATGTTTCTCAAGGCAAACATTCAATTATAATATATTTTAAT

                                      *                               *******
        269 AAAATATATAAAAAAAATTCAAATTAGAATCAATTATGAGGTTATAAAATCATTTAAANNNNNNN
          1 AAAA-AT-TAAAAAAAATTCAAATTAAAATCAATTATGAGGTTATAAAATCATTTAAAGCGAGTA

            ***             *                *      *    **          *    *  
        334 NNNAGGCTTTTGAAGGTATGGGTGACTATAAATAGACTTTGCTTGGTAATGGATATCTTTTTATT
         64 ATAAGGCTTTTGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGGATATCATTTTCTT

                     *    *      *            *       
        399 CATGTTTCTTAAGGTAAACATACAATTATAATATGTTTTAAT
        129 CATGTTTCTCAAGGCAAACATTCAATTATAATATATTTTAAT

                     *     *     ***********     * *        *                
        441 AATAAA-TATAAAAAGTTCAACNNNNNNNNNNTTATGTGATTA-AAAAACTATTTAAAGCGAGTA
          1 AA-AAATTAAAAAAAATTCAAATTAAAATCAATTATGAGGTTATAAAATC-ATTTAAAGCGAGTA

                      *      *  *    *                                       
        504 ATAAGGCTTTCGAAGGCGTGCGTGAGTATAAATGGACTTTTCTTGCCAATGGATATCATTTTCTT
         64 ATAAGGCTTTTGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGGATATCATTTTCTT

                   *  *                     * *       
        569 CATGTTTGTCGAGGCAAACATTCAATTATAATTTCTTTTAAT
        129 CATGTTTCTCAAGGCAAACATTCAATTATAATATATTTTAAT

                   **                                            *         
        611 AAAAATTTTAAAAAATTCAAATTAAAATCAATTATGAGGTTATAAAATCATTTTAAGCGAGTA
          1 AAAAATTAAAAAAAATTCAAATTAAAATCAATTATGAGGTTATAAAATCATTTAAAGCGAGTA

        674 NNNNNNNNNN


Statistics
Matches: 298,  Mismatches: 101, Indels: 13
        0.72            0.25        0.03

Matches are distributed among these distances:
 169    8  0.03
 170  150  0.50
 171    9  0.03
 172  129  0.43
 173    2  0.01

ACGTcount: A:0.39, C:0.09, G:0.13, T:0.34


Consensus pattern (170 bp):   
AAAAATTAAAAAAAATTCAAATTAAAATCAATTATGAGGTTATAAAATCATTTAAAGCGAGTAAT
AAGGCTTTTGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGGATATCATTTTCTTCA
TGTTTCTCAAGGCAAACATTCAATTATAATATATTTTAAT
Done.