Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400830.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4001.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7561
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.33

Warning! 493 characters in sequence are not A, C, G, or T


Found at i:4878 original size:20 final size:22

Alignment explanation


    Indices: 4820--4868  Score: 82
    Period size: 22  Copynumber: 2.2  Consensus size: 22

       4810 ACTTCAAAAC

                                  
       4820 TATTTATATTAAAAAAATCATA
          1 TATTTATATTAAAAAAATCATA

                                   
       4842 TATTTATATTAAAAAAA-CTATA
          1 TATTTATATTAAAAAAATC-ATA

                 
       4864 TATTT
          1 TATTT

       4869 CTTAAAAAAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
  21    1  0.04
  22   25  0.96

ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45


Consensus pattern (22 bp):   
TATTTATATTAAAAAAATCATA

Found at i:6139 original size:60 final size:60

Alignment explanation


    Indices: 6061--6173  Score: 181
    Period size: 60  Copynumber: 1.9  Consensus size: 60

       6051 AAAAGCCCGC

                                *  *      *          *                  
       6061 TAAGTTGAAAATCCTTAACAGGATGACTTAGGCAAAAGTTACGGCAAAAAAAAATCATGA
          1 TAAGTTGAAAATCCTTAACAAGACGACTTAAGCAAAAGTTAAGGCAAAAAAAAATCATGA

                                                        *        
       6121 TAAGTTGAAAATCCTTAACAAGACGACTTAAGCAAAAGTTAAGGTAAAAAAAA
          1 TAAGTTGAAAATCCTTAACAAGACGACTTAAGCAAAAGTTAAGGCAAAAAAAA

       6174 GAGATATGAA


Statistics
Matches: 48,  Mismatches: 5, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  60   48  1.00

ACGTcount: A:0.50, C:0.12, G:0.17, T:0.21


Consensus pattern (60 bp):   
TAAGTTGAAAATCCTTAACAAGACGACTTAAGCAAAAGTTAAGGCAAAAAAAAATCATGA
Done.