Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397611.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5485.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4562
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:605 original size:2 final size:2

Alignment explanation


    Indices: 598--639  Score: 66
    Period size: 2  Copynumber: 21.0  Consensus size: 2

        588 TCGATTGTAG

                                                      *     *             
        598 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT GT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        640 CTAAAAAAAT


Statistics
Matches: 36,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   2   36  1.00

ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50


Consensus pattern (2 bp):   
AT

Done.