Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397289.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_121.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 741006
ACGTcount: A:0.23, C:0.10, G:0.10, T:0.23
Warning! 251738 characters in sequence are not A, C, G, or T
File 2 of 2
Found at i:215865 original size:31 final size:30
Alignment explanation
Indices: 215830--215926 Score: 81
Period size: 31 Copynumber: 3.2 Consensus size: 30
215820 GGCATGATAC
215830 GCTGAGTGGTACCAGATTTAAGACGTCACAT
1 GCTGAGTGGTACCAGATTTAAG-CGTCACAT
** * *
215861 GCTGAGTACTAGCAGATTTATGGCGTGACACAT
1 GCTGAGTGGTACCAGATTTA-AGCGT--CACAT
* * *
215894 --TGAGTGGTACCAAATTAAAGCGTCACAC
1 GCTGAGTGGTACCAGATTTAAGCGTCACAT
215922 GCTGA
1 GCTGA
215927 ATACTAGCAA
Statistics
Matches: 50, Mismatches: 11, Indels: 11
0.69 0.15 0.15
Matches are distributed among these distances:
28 4 0.08
30 7 0.14
31 33 0.66
32 1 0.02
33 5 0.10
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.25
Consensus pattern (30 bp):
GCTGAGTGGTACCAGATTTAAGCGTCACAT
Found at i:215898 original size:62 final size:61
Alignment explanation
Indices: 215795--215944 Score: 210
Period size: 62 Copynumber: 2.4 Consensus size: 61
215785 AATGGACAAA
* * * *
215795 ACATGCTGAGTACTAGCAAATTTATGGCATGATACGCTGAGTGGTACCAGATTTAAGACGTC
1 ACATGCTGAGTACTAGCAAATTTATGGCATGACACACTGAGTGGTACCAAATTAAAG-CGTC
* * *
215857 ACATGCTGAGTACTAGCAGATTTATGGCGTGACACATTGAGTGGTACCAAATTAAAGCGTC
1 ACATGCTGAGTACTAGCAAATTTATGGCATGACACACTGAGTGGTACCAAATTAAAGCGTC
* *
215918 ACACGCTGAATACTAGCAAATTTATGG
1 ACATGCTGAGTACTAGCAAATTTATGG
215945 GATCACTTGT
Statistics
Matches: 78, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
61 28 0.36
62 50 0.64
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (61 bp):
ACATGCTGAGTACTAGCAAATTTATGGCATGACACACTGAGTGGTACCAAATTAAAGCGTC
Found at i:215958 original size:61 final size:62
Alignment explanation
Indices: 215799--215962 Score: 190
Period size: 62 Copynumber: 2.7 Consensus size: 62
215789 GACAAAACAT
* * * * *
215799 GCTGAGTACTAGCAAATTTATGGCATGA-TACGCTGAGTGGTACCAGATTTAAGACGTCACAT
1 GCTGAGTACTAGCAAATTTATGGGATGACT-CGTTGAGTGGTACCAAATTAAAGACGTCACAC
* * *
215861 GCTGAGTACTAGCAGATTTATGGCG-TGACACATTGAGTGGTACCAAATTAAAG-CGTCACAC
1 GCTGAGTACTAGCAAATTTATGG-GATGACTCGTTGAGTGGTACCAAATTAAAGACGTCACAC
* * *
215922 GCTGAATACTAGCAAATTTATGGGATCACTTGTTGAGTGGT
1 GCTGAGTACTAGCAAATTTATGGGATGACTCGTTGAGTGGT
215963 GGTAGATATA
Statistics
Matches: 85, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
60 1 0.01
61 40 0.47
62 44 0.52
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (62 bp):
GCTGAGTACTAGCAAATTTATGGGATGACTCGTTGAGTGGTACCAAATTAAAGACGTCACAC
Found at i:219856 original size:31 final size:31
Alignment explanation
Indices: 219818--220016 Score: 247
Period size: 31 Copynumber: 6.5 Consensus size: 31
219808 AGAAAGAAAT
* **
219818 AAATGTTGTTACATGCCATAAATATCAAGTA
1 AAATGTTGTTACACGCCATGCATATCAAGTA
*
219849 AAATGTTGTTACACGCCATGCATATCAAGTC
1 AAATGTTGTTACACGCCATGCATATCAAGTA
** * * *
219880 AAATGTCATTACACTCCATGCATATCAGGTC
1 AAATGTTGTTACACGCCATGCATATCAAGTA
* * *
219911 AAATGTTGTTATAGGCCATGCATATCAAGTC
1 AAATGTTGTTACACGCCATGCATATCAAGTA
* *
219942 AAATGTTGTTACACACTATGCATATCAAGTA
1 AAATGTTGTTACACGCCATGCATATCAAGTA
* *
219973 AAATATTGTTACAAGCCATGCATAT-AAGTA
1 AAATGTTGTTACACGCCATGCATATCAAGTA
220003 AAATGTTGTTACAC
1 AAATGTTGTTACAC
220017 ACCAAAGCTA
Statistics
Matches: 143, Mismatches: 25, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
30 17 0.12
31 126 0.88
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.31
Consensus pattern (31 bp):
AAATGTTGTTACACGCCATGCATATCAAGTA
Found at i:220690 original size:47 final size:47
Alignment explanation
Indices: 220639--220760 Score: 154
Period size: 47 Copynumber: 2.6 Consensus size: 47
220629 ATGCAGTTTG
** ** *
220639 ACACATTCTAAACCCTGGCATGTCACAGATTTGCTCCATGGTGTGTC
1 ACACATTCTAAACCCTACCATGTCACAGATTCCCTCCATGGCGTGTC
* *
220686 ACACACTCTAAACCCTCCCATGTCACAGATTCCCTCCATGGCGTGTC
1 ACACATTCTAAACCCTACCATGTCACAGATTCCCTCCATGGCGTGTC
* * *
220733 ACAAATCCTGAACCCTACCATGTCACAG
1 ACACATTCTAAACCCTACCATGTCACAG
220761 CTATATCACA
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 64 1.00
ACGTcount: A:0.26, C:0.34, G:0.15, T:0.25
Consensus pattern (47 bp):
ACACATTCTAAACCCTACCATGTCACAGATTCCCTCCATGGCGTGTC
Found at i:220988 original size:24 final size:24
Alignment explanation
Indices: 220951--221094 Score: 103
Period size: 24 Copynumber: 6.1 Consensus size: 24
220941 CAAATTTCTT
*
220951 CCATGGCATGTCACAAACTCCAAA
1 CCATAGCATGTCACAAACTCCAAA
* * * **
220975 CCCTAGCATGTCACAGATTCC-CT
1 CCATAGCATGTCACAAACTCCAAA
* **
220998 CCATGGCATGTCACAAACTCTGAA
1 CCATAGCATGTCACAAACTCCAAA
* *
221022 CCATGGCATGTCACAAACTCTAAA
1 CCATAGCATGTCACAAACTCCAAA
* * * * **
221046 CCCTAGCATGTCATAGATTCC-CT
1 CCATAGCATGTCACAAACTCCAAA
* *
221069 CCATGGCATGTCACAAACTCTAAA
1 CCATAGCATGTCACAAACTCCAAA
221093 CC
1 CC
221095 CTCCCGTGTC
Statistics
Matches: 88, Mismatches: 30, Indels: 4
0.72 0.25 0.03
Matches are distributed among these distances:
23 31 0.35
24 57 0.65
ACGTcount: A:0.31, C:0.33, G:0.13, T:0.22
Consensus pattern (24 bp):
CCATAGCATGTCACAAACTCCAAA
Found at i:221029 original size:71 final size:71
Alignment explanation
Indices: 220951--221094 Score: 261
Period size: 71 Copynumber: 2.0 Consensus size: 71
220941 CAAATTTCTT
220951 CCATGGCATGTCACAAACTCCAAACCCTAGCATGTCACAGATTCCCTCCATGGCATGTCACAAAC
1 CCATGGCATGTCACAAACTCCAAACCCTAGCATGTCACAGATTCCCTCCATGGCATGTCACAAAC
*
221016 TCTGAA
66 TCTAAA
* *
221022 CCATGGCATGTCACAAACTCTAAACCCTAGCATGTCATAGATTCCCTCCATGGCATGTCACAAAC
1 CCATGGCATGTCACAAACTCCAAACCCTAGCATGTCACAGATTCCCTCCATGGCATGTCACAAAC
221087 TCTAAA
66 TCTAAA
221093 CC
1 CC
221095 CTCCCGTGTC
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.31, C:0.33, G:0.13, T:0.22
Consensus pattern (71 bp):
CCATGGCATGTCACAAACTCCAAACCCTAGCATGTCACAGATTCCCTCCATGGCATGTCACAAAC
TCTAAA
Found at i:221031 original size:47 final size:46
Alignment explanation
Indices: 220889--221036 Score: 188
Period size: 47 Copynumber: 3.2 Consensus size: 46
220879 GTCACAATCG
* **
220889 TGTCACAGATTCCCTCCATGGCATGTCACAAATTCTAAATCCTCCCA
1 TGTCACAGATTCCCTCCATGGCATGTCACAAACTCTAAA-CCTAGCA
* * * *
220936 TGTCACAAATTTCTTCCATGGCATGTCACAAACTCCAAACCCTAGCA
1 TGTCACAGATTCCCTCCATGGCATGTCACAAACTCTAAA-CCTAGCA
* *
220983 TGTCACAGATTCCCTCCATGGCATGTCACAAACTCTGAACCATGGCA
1 TGTCACAGATTCCCTCCATGGCATGTCACAAACTCTAAACC-TAGCA
221030 TGTCACA
1 TGTCACA
221037 AACTCTAAAC
Statistics
Matches: 86, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
46 2 0.02
47 84 0.98
ACGTcount: A:0.29, C:0.32, G:0.13, T:0.26
Consensus pattern (46 bp):
TGTCACAGATTCCCTCCATGGCATGTCACAAACTCTAAACCTAGCA
Found at i:221073 original size:47 final size:47
Alignment explanation
Indices: 221022--221237 Score: 231
Period size: 47 Copynumber: 4.6 Consensus size: 47
221012 AAACTCTGAA
** *
221022 CCATGGCATGTCACAAACTCTAAACCCTAGCATGTCATAGATTCCCT
1 CCATGGCATGTCACAAACTCTAAACCCTTCCATGTCACAGATTCCCT
* *
221069 CCATGGCATGTCACAAACTCTAAACCCTCCCGTGTCACAGATTCCCT
1 CCATGGCATGTCACAAACTCTAAACCCTTCCATGTCACAGATTCCCT
* * * * *
221116 CCATGGCGTGTCACAAACTTTGAA-CCTT-GATGTGTCACAGATTCCAT
1 CCATGGCATGTCACAAACTCTAAACCCTTCCA--TGTCACAGATTCCCT
* * * *
221163 CCATGGCTTGTCACAAACTCTGAA-CCTTCCTATGTCAAAGATTCCTT
1 CCATGGCATGTCACAAACTCTAAACCCTTCC-ATGTCACAGATTCCCT
* * *
221210 ACATGGCATGTCATAAATTCTAAACCCT
1 CCATGGCATGTCACAAACTCTAAACCCT
221238 GCCGTATGAC
Statistics
Matches: 143, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
46 3 0.02
47 136 0.95
48 3 0.02
49 1 0.01
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.28
Consensus pattern (47 bp):
CCATGGCATGTCACAAACTCTAAACCCTTCCATGTCACAGATTCCCT
Found at i:221083 original size:165 final size:164
Alignment explanation
Indices: 220889--221188 Score: 440
Period size: 165 Copynumber: 1.8 Consensus size: 164
220879 GTCACAATCG
* * * *
220889 TGTCACAGATTCCCTCCATGGCATGTCACAAATTCTAAATCCTCCCATGTCACAAATTTCTTCCA
1 TGTCACAGATTCCCTCCATGGCATGTCACAAACTCTAAACCCTCCCATGTCACAAATTCCCTCCA
*
220954 TGGCATGTCACAAACTCCAAACCCTAGCA-TGTCACAGATTCCCTCCATGGCATGTCACAAACTC
66 TGGCATGTCACAAACTCCAAA-CCTAG-AGTGTCACAGATTCCATCCATGGCATGTCACAAACTC
221018 TGAACCATGGCATGTCACAAACTCTAAACCCTAGCA
129 TGAACCATGGCATGTCACAAACTCTAAACCCTAGCA
* * *
221054 TGTCATAGATTCCCTCCATGGCATGTCACAAACTCTAAACCCTCCCGTGTCACAGATTCCCTCCA
1 TGTCACAGATTCCCTCCATGGCATGTCACAAACTCTAAACCCTCCCATGTCACAAATTCCCTCCA
* *** * *
221119 TGGCGTGTCACAAACTTTGAACCTTGATGTGTCACAGATTCCATCCATGGCTTGTCACAAACTCT
66 TGGCATGTCACAAACTCCAAACCTAGA-GTGTCACAGATTCCATCCATGGCATGTCACAAACTCT
221184 GAACC
130 GAACC
221189 TTCCTATGTC
Statistics
Matches: 119, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
163 1 0.01
164 4 0.03
165 114 0.96
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (164 bp):
TGTCACAGATTCCCTCCATGGCATGTCACAAACTCTAAACCCTCCCATGTCACAAATTCCCTCCA
TGGCATGTCACAAACTCCAAACCTAGAGTGTCACAGATTCCATCCATGGCATGTCACAAACTCTG
AACCATGGCATGTCACAAACTCTAAACCCTAGCA
Found at i:221112 original size:118 final size:118
Alignment explanation
Indices: 220904--221141 Score: 350
Period size: 118 Copynumber: 2.0 Consensus size: 118
220894 CAGATTCCCT
* * * * *
220904 CCATGGCATGTCACAAATTCTAAATCCTCCCATGTCACAAATTTCTTCCATGGCATGTCACAAAC
1 CCATGGCATGTCACAAACTCTAAACCCTACCATGTCACAAATTCCCTCCATGGCATGTCACAAAC
*
220969 TCCAAACCCTAGCATGTCACAGATTCCCTCCATGGCATGTCACAAACTCTGAA
66 TCCAAACCCTACCATGTCACAGATTCCCTCCATGGCATGTCACAAACTCTGAA
* * *
221022 CCATGGCATGTCACAAACTCTAAACCCTAGCATGTCATAGATTCCCTCCATGGCATGTCACAAAC
1 CCATGGCATGTCACAAACTCTAAACCCTACCATGTCACAAATTCCCTCCATGGCATGTCACAAAC
* * * * *
221087 TCTAAACCCTCCCGTGTCACAGATTCCCTCCATGGCGTGTCACAAACTTTGAA
66 TCCAAACCCTACCATGTCACAGATTCCCTCCATGGCATGTCACAAACTCTGAA
221140 CC
1 CC
221142 TTGATGTGTC
Statistics
Matches: 106, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
118 106 1.00
ACGTcount: A:0.29, C:0.33, G:0.13, T:0.25
Consensus pattern (118 bp):
CCATGGCATGTCACAAACTCTAAACCCTACCATGTCACAAATTCCCTCCATGGCATGTCACAAAC
TCCAAACCCTACCATGTCACAGATTCCCTCCATGGCATGTCACAAACTCTGAA
Found at i:221120 original size:94 final size:94
Alignment explanation
Indices: 221022--221237 Score: 256
Period size: 94 Copynumber: 2.3 Consensus size: 94
221012 AAACTCTGAA
* *
221022 CCATGGCATGTCACAAACTCTAAACCCTAGCA-TGTCATAGATTCCCTCCATGGCATGTCACAAA
1 CCATGGCATGTCACAAACTCTAAACCCTAG-AGTGTCACAGATTCCATCCATGGCATGTCACAAA
* *
221086 CTCTAAACCCTCCCGTGTCACAGATTCCCT
65 CTCTAAACCCTCCCATGTCAAAGATTCCCT
* * * * *
221116 CCATGGCGTGTCACAAACTTTGAA-CCTTGATGTGTCACAGATTCCATCCATGGCTTGTCACAAA
1 CCATGGCATGTCACAAACTCTAAACCCTAGA-GTGTCACAGATTCCATCCATGGCATGTCACAAA
* * * *
221180 CTCTGAACCTTCCTATGTCAAAGATTCCTT
65 CTCTAAACCCTCCCATGTCAAAGATTCCCT
* * *
221210 ACATGGCATGTCATAAATTCTAAACCCT
1 CCATGGCATGTCACAAACTCTAAACCCT
221238 GCCGTATGAC
Statistics
Matches: 100, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
92 1 0.01
93 4 0.04
94 92 0.92
95 3 0.03
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.28
Consensus pattern (94 bp):
CCATGGCATGTCACAAACTCTAAACCCTAGAGTGTCACAGATTCCATCCATGGCATGTCACAAAC
TCTAAACCCTCCCATGTCAAAGATTCCCT
Found at i:222504 original size:170 final size:170
Alignment explanation
Indices: 222037--224965 Score: 1755
Period size: 171 Copynumber: 17.3 Consensus size: 170
222027 AAAAATTTCC
* * * * *
222037 TAAAACATATCATAA-TTGAATGCTTGCATT-AGGAAACATGAAGCAAAAGGCATCTATTGATAA
1 TAAAACAGATCATAATTTG-ATGTTTGCATTGA-GAAACATGAAGCAAAAGCCATCCATTGACAA
* * * * * ** *
222100 -AAAATGTTCATATATAATCACTCATGTCTTCGAAAAGCCTTA-TTACTCACCCTAAGTTA-TTT
64 GAAAA-GTCCATTTATAGTCACTCATGCCTTC-AAAAGCC-TAGTTACTCGCTTTAA-ATAGTTT
* * *
222162 TGTAA-CTTTATAAATGATTTTAAATTGATATTTTTTT-ATTTTTAGT
125 TATAATC-TTATAAATGATTTTAAA-TCAAATTTTTTTCATTTTTAGT
* * * * * * *
222208 TAAAATATATCATATTTTAATGTTTGCATTGGGAAATC-TAAAGCAAAAGCCATTCATTGACAAG
1 TAAAACAGATCATAATTTGATGTTTGCATTGAGAAA-CATGAAGCAAAAGCCATCCATTGACAAG
* * * * * * * * * * * * *
222272 AAAAATCCATTTATAATTACTTAGGCCTTCAACAGCTTAATAATTCACTTCAAATGGTTTTATAA
65 AAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTAGTTACTCGCTTTAAATAGTTTTATAA
* * **
222337 TCCTATAAATGATTTCAAATCAAATTTTTTTCATTTCAAGT
130 TCTTATAAATGATTTTAAATCAAATTTTTTTCATTTTTAGT
* *
222378 TAAAACAGATCATAATTGGATGTTTGCATTGAGAAACATGAAACAAAAGCCATCCATTGACAAGA
1 TAAAACAGATCATAATTTGATGTTTGCATTGAGAAACATGAAGCAAAAGCCATCCATTGACAAGA
* * ** * * *
222443 AAAGTCCATTTATAGCCAGTCATATCTTAAAAAGCCTTGTTACTCACTTTAAATAGTTTTATAA-
66 AAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTAGTTACTCGCTTTAAATAGTTTTATAAT
* * * ** * *
222507 CTTTATAAAAGAGTTTAGATTGAATTTTTCTTCATTTTCAAT
131 C-TTATAAATGATTTTAAATCAAATTTTT-TTCATTTTTAGT
* * * * * *
222549 TAAAATAGATTATAATTTGTTATTTGCATTGGGAAACATGAAGCAAAAGCTATCCATTGACAAGA
1 TAAAACAGATCATAATTTGATGTTTGCATTGAGAAACATGAAGCAAAAGCCATCCATTGACAAGA
* * * ** *
222614 AAAGTCCATCTATACGT-ACTCATGCC-TCTAAAAGCGTTGTTACTCGCACTAAATCA-TTTTAA
66 AAAGTCCATTTATA-GTCACTCATGCCTTC-AAAAGCCTAGTTACTCGCTTTAAAT-AGTTTTAT
* * * * * *
222676 AATATCATAAATGATTTTAAATTGAATTATTTTTTCATCTTAAGT
128 AATCTTATAAATGATTTTAAA-TCAAAT-TTTTTTCATTTTTAGT
* * * * * * * * *
222721 TTAAATAGATCATAATTGGATGTTTACATGGACAAACATGAAGCGAAAGTCATCCATTGATAAGA
1 TAAAACAGATCATAATTTGATGTTTGCATTGAGAAACATGAAGCAAAAGCCATCCATTGACAAGA
* * ** * *
222786 AAAGGCTATTTATAGTCACTTGTGCCTTCAAAAGCCTAGTTACTTGCTTTAAATGGTTTTATAAT
66 AAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTAGTTACTCGCTTTAAATAGTTTTATAAT
* ** * ** *
222851 CTTATAAACGAGCTTAGATTGAATTTTTCCTCATTTTT-GAT
131 CTTATAAATGATTTTAAATCAAATTTTT-TTCATTTTTAG-T
* ** ** *
222892 TAAAAC-GATCATAATTTCATGTTTGCATT-AGGAAATGTGAAGTGAAAGCCATTCATTGACAAG
1 TAAAACAGATCATAATTTGATGTTTGCATTGA-GAAACATGAAGCAAAAGCCATCCATTGACAAG
* * * ** * * * *
222955 AAAAGTACATTTATGGTCAC-CTATGCTTTGGAGAGCCTTGTTACTCGCTTTAAGTAGTTTTGTA
65 AAAAGTCCATTTATAGTCACTC-ATGCCTTCAAAAGCCTAGTTACTCGCTTTAAATAGTTTTATA
* **** *
223019 A-CTTTATAAATGATTGTAAATTGCTTTTTTTTAATTTTTAGT
129 ATC-TTATAAATGATTTTAAATCAAATTTTTTTCATTTTTAGT
* * ** * * *
223061 TAAAAC-GAATCAAAATTTGATATTTGCATCAACAAACATGAAGCGAAAGCCATCCATTGACAAT
1 TAAAACAG-ATCATAATTTGATGTTTGCATTGAGAAACATGAAGCAAAAGCCATCCATTGACAAG
* * * ** * * *
223125 AAAAATCTCA-TTATAGTCACCCAAGCCTTTGAAAGCCTAGTAACTCACTTCAAAT-GATTTTAT
65 AAAAGTC-CATTTATAGTCACTCATGCCTTCAAAAGCCTAGTTACTCGCTTTAAATAG-TTTTAT
* * * * * *
223188 AGTTTTATAAATTATTTTAAATAAAAAATATTTTT-AGTTTTAGT
128 AATCTTATAAATGATTTTAAAT--CAAATTTTTTTCATTTTTAGT
* * * * * * ** *
223232 TAAAATAGATCATAATTAGATGATTGCATT-AGGAAACGTGAA-AAAAAGTCATCTGTTGATAAG
1 TAAAACAGATCATAATTTGATGTTTGCATTGA-GAAACATGAAGCAAAAGCCATCCATTGACAAG
* * * * * * *
223295 AAAAGTCAATATATAGTCA-TCGATGCTTTTAAAATCCTAGTTACTCACTTTAATTAGTTTTATA
65 AAAAGTCCATTTATAGTCACTC-ATGCCTTCAAAAGCCTAGTTACTCGCTTTAAATAGTTTTATA
* * * * *
223359 ATCTGATAAATGATTGTAAATCAATTTTTTTTC-TTTCATGGT
129 ATCTTATAAATGATTTTAAATCAAATTTTTTTCATTT-TTAGT
* * * * * *
223401 TAGAACATACCATAATTGGATGTTTGCATCCG-GAAACATGAAGCAAAAGCCATGCATTGACAAG
1 TAAAACAGATCATAATTTGATGTTTGCAT-TGAGAAACATGAAGCAAAAGCCATCCATTGACAAG
** * * * * * *
223465 AAAAGTCTTTTTATAGTCAC-CTGTGCCATT-AAAAGCCTAGTAACTTGCTTCAAATGGTTTTAC
65 AAAAGTCCATTTATAGTCACTC-ATGCC-TTCAAAAGCCTAGTTACTCGCTTTAAATAGTTTTAT
* * * * *
223528 AGTCCTATAAATGATTTTAAATCAAAAATTTTTTCATTTATGGT
128 AATCTTATAAATGATTTTAAATC-AAATTTTTTTCATTTTTAGT
* * * * ** * * *
223572 TAAAACAAATCATAATTTGATATTTTCATTGGGAAACATGAAGGGAAAGCTATTCATTGATAAGA
1 TAAAACAGATCATAATTTGATGTTTGCATTGAGAAACATGAAGCAAAAGCCATCCATTGACAAGA
* * ** * * *
223637 AAAG-CTCATTTAAAG-CGA-TCTATGCTTTTGAAAGCCTTGTTACTCGCTTTAAATGGTTTTGT
66 AAAGTC-CATTTATAGTC-ACTC-ATGCCTTCAAAAGCCTAGTTACTCGCTTTAAATAGTTTTAT
* * * * *
223699 AA-CTTTATAAATGATTGTAAAT-TATTTTTTTTAATTTTTGGT
128 AATC-TTATAAATGATTTTAAATCAAATTTTTTTCATTTTTAGT
* * ** ** ** *
223741 TAAAACAGACCATCATTTGATGTTTGCATCAAGAAACATGAAGTGAAAGCCATTTATTGATAAGA
1 TAAAACAGATCATAATTTGATGTTTGCATTGAGAAACATGAAGCAAAAGCCATCCATTGACAAGA
* * * * * * *
223806 AAAATCCATTTATAGTCACTTATGCCTTCGAAAGCCTAGTAACTTG-TTTCAAGT-GATTTTATT
66 AAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTAGTTACTCGCTTT-AAATAG-TTTTATA
* * * * *
223869 ATTTTATAAATTATTTTAAATGAAAATTATTTTCATTTTTGGT
129 ATCTTATAAATGATTTTAAAT-CAAATTTTTTTCATTTTTAGT
* * * * * * *
223912 TAAAACATATCATAA-TTGAAGGATTGCATT-AGGAAACATGAAGTAAAAGTCATCCGTTGATAA
1 TAAAACAGATCATAATTTG-ATGTTTGCATTGA-GAAACATGAAGCAAAAGCCATCCATTGACAA
** * * * * * * ** *
223975 GAAAAGTTAATATATAGTCACTAACGCATTCAAAATCCTAGTCACTCATTTTAATTAGTTTTATA
64 GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTAGTTACTCGCTTTAAATAGTTTTATA
* * *
224040 AT-TTGATAAAAGATTTTAAATCAAAATTTTTTTCTTTTTTGGT
129 ATCTT-ATAAATGATTTTAAATC-AAATTTTTTTCATTTTTAGT
* * * ** * * * *
224083 TAGAATATATTGTAATTGGATGTTTTCAAT-AGGAAACATGAAGCAAAAGCCATGCATTGACAAG
1 TAAAACAGATCATAATTTGATGTTTGCATTGA-GAAACATGAAGCAAAAGCCATCCATTGACAAG
* * * *
224147 AAAAGTCTATTTATAGTCACTTATGCCTTCAAAAGCCTAGTAACTCG-TTTCAAATGGTTTTATA
65 AAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTAGTTACTCGCTTT-AAATAGTTTTATA
* * * *
224211 GTCCTATAAATGATTTCAAATCAAAATATTTTTCATTTTTAGT
129 ATCTTATAAATGATTTTAAATC-AAATTTTTTTCATTTTTAGT
* * * * * * * *
224254 TAAAACAAATCACAATTTGATGTTAGCATTAAGAAACATGAACCAAAAGTCATCCATTGATAAAA
1 TAAAACAGATCATAATTTGATGTTTGCATTGAGAAACATGAAGCAAAAGCCATCCATTGACAAGA
* * * * * * * * * * *
224319 AAAGTCCATTTATAGCCATTCATGCCTTCGAAAGTCTTGTTAATTGCTTTGAGTGGATTTATAA-
66 AAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTAGTTACTCGCTTTAAATAGTTTTATAAT
**
224383 CTTTATAAATGATTTTAAATTC-AATTATTTTTCATTTTGGGT
131 C-TTATAAATGATTTTAAA-TCAAATT-TTTTTCATTTTTAGT
* * * * *
224425 TAAAATAGATCATAA-TT--TGTTTGCATTAAGAAACCTGAAGTAGAAGCCATCCATTGACAAGA
1 TAAAACAGATCATAATTTGATGTTTGCATTGAGAAACATGAAGCAAAAGCCATCCATTGACAAGA
* * * *
224487 AAAG--C---------CACTCATGGCTTCAAAAGCCTTGTTACTCTCTTTAAGTAGTTTTATAA-
66 AAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTAGTTACTCGCTTTAAATAGTTTTATAAT
* *
224540 CTTTATAAATTA-TTT---T-AAA----TTT-ATTTTTGGT
131 C-TTATAAATGATTTTAAATCAAATTTTTTTCATTTTTAGT
* * * * ** * * * *
224571 TAAAATATATCATAATTTAATGTTTACATT-AGGAAACATGAAGTGAAATCCATTCATTAACCA-
1 TAAAACAGATCATAATTTGATGTTTGCATTGA-GAAACATGAAGCAAAAGCCATCCATTGACAAG
* ** ** * * * * *
224634 AAAA-TCTATTTATAGTCACTCATGGTTTTGAAAGCCTAGTAACTCGCTTCAATTGGTTTTATAT
65 AAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTAGTTACTCGCTTTAAATAGTTTTATAA
* * * *
224698 TCCTATAAATGGTTTTAAATCAAAGCTTTCTT-ATTTTTAGT
130 TCTTATAAATGATTTTAAATCAAA-TTTTTTTCATTTTTAGT
* * * * *
224739 TAAAACAAATCATAATTGGATGTTTGCATTGAAAAACATAAAGCAAAAGTCATCCATTGACAAGA
1 TAAAACAGATCATAATTTGATGTTTGCATTGAGAAACATGAAGCAAAAGCCATCCATTGACAAGA
* * * * * * **
224804 AAAGTCCA-TTATAATCACGCACGCCTTCAAAAGGCTCGTTACTCACTTTAGGT-GATTTTATAA
66 AAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTAGTTACTCGCTTTAAATAG-TTTTATAA
* * *
224867 -CTTTATAAATGATTTTAAGTTGAATTTTTTTTTTCA-TTTTAGGT
130 TC-TTATAAATGATTTTAA-ATCAA--ATTTTTTTCATTTTTA-GT
* * * * *
224911 TCAAACATATCATAATTTGTTCTTTACATT-AGAAA-ATGTGAAGCAAAAGCCATCC
1 TAAAACAGATCATAATTTGATGTTTGCATTGAGAAACA--TGAAGCAAAAGCCATCC
224966 TAGTTTTGTT
Statistics
Matches: 2114, Mismatches: 529, Indels: 229
0.74 0.18 0.08
Matches are distributed among these distances:
146 22 0.01
147 5 0.00
148 5 0.00
149 33 0.02
152 3 0.00
156 3 0.00
157 49 0.02
158 45 0.02
159 4 0.00
162 1 0.00
163 3 0.00
166 1 0.00
168 114 0.05
169 253 0.12
170 574 0.27
171 797 0.38
172 196 0.09
173 6 0.00
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.37
Consensus pattern (170 bp):
TAAAACAGATCATAATTTGATGTTTGCATTGAGAAACATGAAGCAAAAGCCATCCATTGACAAGA
AAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTAGTTACTCGCTTTAAATAGTTTTATAAT
CTTATAAATGATTTTAAATCAAATTTTTTTCATTTTTAGT
Found at i:222688 original size:341 final size:342
Alignment explanation
Indices: 222037--222960 Score: 922
Period size: 341 Copynumber: 2.7 Consensus size: 342
222027 AAAAATTTCC
* * * * *
222037 TAAAACATATCATAATTGAATGCTTGCATT-AGGAAACATGAAGCAAAAGGCATCTATTGATAA-
1 TAAAACAGATCATAATTGGATGTTTGCATTGA-GAAACATGAAGCAAAAGCCATCCATTGATAAG
* * * * * ** * *
222100 AAAATGTTCATATATAATCACTCATGTCTTCGAAAAGCCTTATTACTCACCCTAAGTTA-TTTTG
65 AAAA-GTCCATTTATAGTCACTCATGTCTT-AAAAAGCCTTGTTACTCACTTTAA-ATAGTTTTA
* * * * * *
222164 TAACTTTATAAATGATTTTAAATTGATATTTTT-TT-ATTTTTAGTTAAAATATATCATATTTTA
127 TAACTTTATAAAAGAGTTTAGATTGA-ATTTTTCTTCATTTTTAATTAAAATAGATCATAATTTA
* * * *
222227 ATGTTTGCATTGGGAAATCTAAAGCAAAAGCCATTCATTGACAAGAAAAATCCATTTATAATTAC
191 ATGTTTGCATTGGGAAA-CTGAAGCAAAAGCCATTCATTGACAAGAAAAGTCCATCTATAAGTAC
* * * ** *
222292 TTAGGCCTTCAACAGCTTAATAATTCACTTCAAATGGTTTTATAATCCTATAAATGATTTCAAA-
255 TCAGGCCTTCAAAAGCTTAATAATGCACTTCAAATCATTTTAAAATCCTATAAATGATTTCAAAT
222356 TCAAAT-TTTTTTCAT-TTCAAGT
320 TCAAATATTTTTTCATCTT-AAGT
* *
222378 TAAAACAGATCATAATTGGATGTTTGCATTGAGAAACATGAAACAAAAGCCATCCATTGACAAGA
1 TAAAACAGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAAAAGCCATCCATTGATAAGA
* * *
222443 AAAGTCCATTTATAGCCAGTCATATCTTAAAAAGCCTTGTTACTCACTTTAAATAGTTTTATAAC
66 AAAGTCCATTTATAGTCACTCATGTCTTAAAAAGCCTTGTTACTCACTTTAAATAGTTTTATAAC
* * ** *
222508 TTTATAAAAGAGTTTAGATTGAATTTTTCTTCATTTTCAATTAAAATAGATTATAATTTGTTATT
131 TTTATAAAAGAGTTTAGATTGAATTTTTCTTCATTTTTAATTAAAATAGATCATAATTTAATGTT
* * * *
222573 TGCATTGGGAAACATGAAGCAAAAGCTATCCATTGACAAGAAAAGTCCATCTATACGTACTCATG
196 TGCATTGGGAAAC-TGAAGCAAAAGCCATTCATTGACAAGAAAAGTCCATCTATAAGTACTCAGG
** * * *
222638 CC-TCTAAAAGCGTTGTTACTCGCAC-T-AAATCATTTTAAAAT-ATCATAAATGATTTTAAATT
260 CCTTC-AAAAGC-TTAATAAT-GCACTTCAAATCATTTTAAAATCCT-ATAAATGATTTCAAATT
* *
222699 GAATTATTTTTTCATCTTAAGT
321 CAAATATTTTTTCATCTTAAGT
* * * * * * *
222721 TTAAATAGATCATAATTGGATGTTTACATGGACAAACATGAAGCGAAAGTCATCCATTGATAAGA
1 TAAAACAGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAAAAGCCATCCATTGATAAGA
* * ** * * * ** *
222786 AAAGGCTATTTATAGTCACTTGTGCCTTCAAAAGCCTAGTTACTTGCTTTAAATGGTTTTATAA-
66 AAAGTCCATTTATAGTCACTCATGTCTTAAAAAGCCTTGTTACTCACTTTAAATAGTTTTATAAC
* * * * * *
222850 TCTTATAAACGAGCTTAGATTGAATTTTTCCTCATTTTTGATTAAAA-CGATCATAATTTCATGT
131 T-TTATAAAAGAGTTTAGATTGAATTTTTCTTCATTTTTAATTAAAATAGATCATAATTTAATGT
* * **
222914 TTGCATTAGGAAATGTGAAGTGAAAGCCATTCATTGACAAGAAAAGT
195 TTGCATTGGGAAA-CTGAAGCAAAAGCCATTCATTGACAAGAAAAGT
222961 ACATTTATGG
Statistics
Matches: 479, Mismatches: 89, Indels: 29
0.80 0.15 0.05
Matches are distributed among these distances:
339 8 0.02
340 53 0.11
341 185 0.39
342 68 0.14
343 163 0.34
344 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.36
Consensus pattern (342 bp):
TAAAACAGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAAAAGCCATCCATTGATAAGA
AAAGTCCATTTATAGTCACTCATGTCTTAAAAAGCCTTGTTACTCACTTTAAATAGTTTTATAAC
TTTATAAAAGAGTTTAGATTGAATTTTTCTTCATTTTTAATTAAAATAGATCATAATTTAATGTT
TGCATTGGGAAACTGAAGCAAAAGCCATTCATTGACAAGAAAAGTCCATCTATAAGTACTCAGGC
CTTCAAAAGCTTAATAATGCACTTCAAATCATTTTAAAATCCTATAAATGATTTCAAATTCAAAT
ATTTTTTCATCTTAAGT
Found at i:222799 original size:343 final size:340
Alignment explanation
Indices: 222341--222960 Score: 803
Period size: 343 Copynumber: 1.8 Consensus size: 340
222331 TTATAATCCT
*
222341 ATAAATGATTTCAAATCAAATTTTTTTCATTTCAAGTTAAAACAGATCATAATTGGATGTTTGCA
1 ATAAATGATTTCAAATCAAATTTTTTTCATTTCAAGTTAAAACAGATCATAATTGGATGTTTACA
* * * * *
222406 TTGAGAAACATGAAACAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGCCAGTCATATCTT
66 TGGACAAACATGAAACAAAAGCCATCCATTGACAAGAAAAGGCCATTTATAGCCACTCATACCTT
* *
222471 AAAAAGCCTTGTTACTCACTTTAAATAGTTTTATAA-CTTTATAAAAGAGTTTAGATTGAATTTT
131 AAAAAGCCTAGTTACTCACTTTAAATAGTTTTATAATC-TTATAAAAGAGCTTAGATTGAATTTT
* * ** * *
222535 TCTTCATTTTCAATTAAAATAGATTATAATTTGTTATTTGCATTGGGAAACATGAAGCAAAAGCT
195 TCCTCATTTTCAATTAAAA-AGATCATAATTTCATATTTGCATTAGGAAACATGAAGCAAAAGCC
222600 ATCCATTGACAAGAAAAGTCCATCTATACGTACTCATGCCTCTAAAAGCGTTGTTACTCGCACTA
259 ATCCATTGACAAGAAAAGTCCATCTATACGTACTCATGCCTCTAAAAGCGTTGTTACTCGCACTA
222665 AATCATTTTAAAATATC
324 AATCATTTTAAAATATC
* * * * *
222682 ATAAATGATTTTAAATTGAATTATTTTTTCATCTT-AAGTTTAAATAGATCATAATTGGATGTTT
1 ATAAATGATTTCAAA-TCAAAT-TTTTTTCAT-TTCAAGTTAAAACAGATCATAATTGGATGTTT
* * * * * * ** *
222746 ACATGGACAAACATGAAGCGAAAGTCATCCATTGATAAGAAAAGGCTATTTATAGTCACTTGTGC
63 ACATGGACAAACATGAAACAAAAGCCATCCATTGACAAGAAAAGGCCATTTATAGCCACTCATAC
* ** * *
222811 CTTCAAAAGCCTAGTTACTTGCTTTAAATGGTTTTATAATCTTATAAACGAGCTTAGATTGAATT
128 CTTAAAAAGCCTAGTTACTCACTTTAAATAGTTTTATAATCTTATAAAAGAGCTTAGATTGAATT
** * * ** **
222876 TTTCCTCATTTTTGATTAAAACGATCATAATTTCATGTTTGCATTAGGAAATGTGAAGTGAAAGC
193 TTTCCTCATTTTCAATTAAAAAGATCATAATTTCATATTTGCATTAGGAAACATGAAGCAAAAGC
*
222941 CATTCATTGACAAGAAAAGT
258 CATCCATTGACAAGAAAAGT
222961 ACATTTATGG
Statistics
Matches: 233, Mismatches: 42, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
341 14 0.06
342 56 0.24
343 160 0.69
344 3 0.01
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.36
Consensus pattern (340 bp):
ATAAATGATTTCAAATCAAATTTTTTTCATTTCAAGTTAAAACAGATCATAATTGGATGTTTACA
TGGACAAACATGAAACAAAAGCCATCCATTGACAAGAAAAGGCCATTTATAGCCACTCATACCTT
AAAAAGCCTAGTTACTCACTTTAAATAGTTTTATAATCTTATAAAAGAGCTTAGATTGAATTTTT
CCTCATTTTCAATTAAAAAGATCATAATTTCATATTTGCATTAGGAAACATGAAGCAAAAGCCAT
CCATTGACAAGAAAAGTCCATCTATACGTACTCATGCCTCTAAAAGCGTTGTTACTCGCACTAAA
TCATTTTAAAATATC
Found at i:223198 original size:340 final size:338
Alignment explanation
Indices: 222376--224489 Score: 1415
Period size: 340 Copynumber: 6.2 Consensus size: 338
222366 TTCATTTCAA
* * ** * * *
222376 GTTAAAACAGATCATAATTGGATGTTTGCATTGAGAAACATGAAACAAAAGCCATCCATTGACAA
1 GTTAAAACAGACCATAATTTGATGTTTGCATCAACAAACATGAAGCGAAAGCCATCCATTGACAA
* * * * * * ** *
222441 GAAAAGTC-CATTTATAGCCAGTCATAT--CTTAAAAAGCCTTGTTACTCACTTTAAAT-AGTTT
66 GAAAAATCTCATTTATAGTCA--CCTATGCCTTCAAAAGCCTAGTAACTTGCTTCAAATGA-TTT
* * * * ** * ** * *
222502 TATA-ACTTTATAAAAGAGTTTAGATTGAATTTTTCTTCATTTTCAATTAAAATAGATTATAATT
128 TATAGTC-TTATAAATGATTTTAAATAAAAATTTT-TTCATTTTTGATTAAAA-CGATCATAATT
* * * * * * * *
222566 TGTTATTTGCATTGGGAAACATGAAGCA-AAAGCTATCCATTGACAAGAAAAGTCCATCTATACG
190 TGATGTTTGCATTAGGAAACGTGAAG-AGAAAGCCATTCATTGATAAGAAAAGT-CATTTATA-G
* * * * ** * * *
222630 T-A-CTCATGCCTCTAAAAGCGTTGTTACTCGCACTAAATCA-TTTT-AAAATATCATAAATGAT
252 TCATCT-ATGCTTTTGAAAGCCTTGTTACTCGCTTTAAAT-AGTTTTGTAACT-TTATAAATGAT
* * * **
222691 TTTAAATTGAATTATTTTTTCATCTTAA
314 TGTAAATT--ATT-TTTTTTAATTTTTG
* * * * * ** * *
222719 GTTTAAATAGATCATAATTGGATGTTTACATGGACAAACATGAAGCGAAAGTCATCCATTGATAA
1 GTTAAAACAGACCATAATTTGATGTTTGCATCAACAAACATGAAGCGAAAGCCATCCATTGACAA
** * * * * *
222784 GAAAAGGCT-ATTTATAGTCACTTGTGCCTTCAAAAGCCTAGTTACTTGCTTTAAATGGTTTTAT
66 GAAAAATCTCATTTATAGTCACCTATGCCTTCAAAAGCCTAGTAACTTGCTTCAAATGATTTTAT
* * ** * ** *
222848 AATCTTATAAACGAGCTTAGAT-TGAATTTTTCCTCATTTTTGATTAAAACGATCATAATTTCAT
131 AGTCTTATAAATGATTTTAAATAAAAATTTTT--TCATTTTTGATTAAAACGATCATAATTTGAT
* * * * *
222912 GTTTGCATTAGGAAATGTGAAGTGAAAGCCATTCATTGACAAGAAAAGTACATTTATGGTCACCT
194 GTTTGCATTAGGAAACGTGAAGAGAAAGCCATTCATTGATAAGAAAAGT-CATTTATAGTCATCT
* * *
222977 ATGCTTTGGAGAGCCTTGTTACTCGCTTTAAGTAGTTTTGTAACTTTATAAATGATTGTAAATTG
258 ATGCTTTTGAAAGCCTTGTTACTCGCTTTAAATAGTTTTGTAACTTTATAAATGATTGTAAATT-
* *
223042 CTTTTTTTTAATTTTTA
322 ATTTTTTTTAATTTTTG
* * *
223059 GTTAAAAC-GAATCAAAATTTGATATTTGCATCAACAAACATGAAGCGAAAGCCATCCATTGACA
1 GTTAAAACAG-ACCATAATTTGATGTTTGCATCAACAAACATGAAGCGAAAGCCATCCATTGACA
* * * ** **
223123 ATAAAAATCTCA-TTATAGTCACCCAAGCCTTTGAAAGCCTAGTAACTCACTTCAAATGATTTTA
65 AGAAAAATCTCATTTATAGTCACCTATGCCTTCAAAAGCCTAGTAACTTGCTTCAAATGATTTTA
* * * * *
223187 TAGTTTTATAAATTATTTTAAATAAAAAATATTTTT-AGTTTT-AGTTAAAATAGATCATAATTA
130 TAGTCTTATAAATGATTTTAAAT-AAAAAT-TTTTTCATTTTTGA-TTAAAA-CGATCATAATTT
* * * * *
223250 GATGATTGCATTAGGAAACGTGAA-AAAAAGTCA-TCTGTTGATAAGAAAAGTCAATATATAGTC
191 GATGTTTGCATTAGGAAACGTGAAGAGAAAGCCATTC-ATTGATAAGAAAAGTC-ATTTATAGTC
* * * * * * * *
223313 ATCGATGCTTTTAAAATCCTAGTTACTCACTTTAATTAGTTTTATAA-TCTGATAAATGATTGTA
254 ATCTATGCTTTTGAAAGCCTTGTTACTCGCTTTAAATAGTTTTGTAACT-TTATAAATGATTGTA
* * *
223377 AATCAATTTTTTTT-CTTTCATG
318 AAT-TATTTTTTTTAATTT-TTG
* * * *** * *
223399 GTTAGAACATACCATAATTGGATGTTTGCATCCGGAAACATGAAGCAAAAGCCATGCATTGACAA
1 GTTAAAACAGACCATAATTTGATGTTTGCATCAACAAACATGAAGCGAAAGCCATCCATTGACAA
* * * *
223464 GAAAAGTCT-TTTTATAGTCACCTGTGCCATT-AAAAGCCTAGTAACTTGCTTCAAATGGTTTTA
66 GAAAAATCTCATTTATAGTCACCTATGCC-TTCAAAAGCCTAGTAACTTGCTTCAAATGATTTTA
* * * * *
223527 CAGTCCTATAAATGATTTTAAATCAAAAATTTTTTCATTTATGGTTAAAACAAATCATAATTTGA
130 TAGTCTTATAAATGATTTTAAAT-AAAAATTTTTTCATTTTTGATTAAAAC-GATCATAATTTGA
* * * * * * *
223592 TATTTTCATTGGGAAACATGAAGGGAAAGCTATTCATTGATAAGAAAAGCTCATTTAAAG-CGAT
193 TGTTTGCATTAGGAAACGTGAAGAGAAAGCCATTCATTGATAAGAAAAG-TCATTTATAGTC-AT
*
223656 CTATGCTTTTGAAAGCCTTGTTACTCGCTTTAAATGGTTTTGTAACTTTATAAATGATTGTAAAT
256 CTATGCTTTTGAAAGCCTTGTTACTCGCTTTAAATAGTTTTGTAACTTTATAAATGATTGTAAAT
223721 TATTTTTTTTAATTTTTG
321 TATTTTTTTTAATTTTTG
* * * ** *
223739 GTTAAAACAGACCATCATTTGATGTTTGCATCAAGAAACATGAAGTGAAAGCCATTTATTGATAA
1 GTTAAAACAGACCATAATTTGATGTTTGCATCAACAAACATGAAGCGAAAGCCATCCATTGACAA
* * * *
223804 GAAAAATC-CATTTATAGTCACTTATGCCTTCGAAAGCCTAGTAACTTGTTTCAAGTGATTTTAT
66 GAAAAATCTCATTTATAGTCACCTATGCCTTCAAAAGCCTAGTAACTTGCTTCAAATGATTTTA-
* * * * *
223868 TA-TTTTATAAATTATTTTAAATGAAAATTATTTTCATTTTTGGTTAAAACATATCATAA-TTGA
130 TAGTCTTATAAATGATTTTAAATAAAAATT-TTTTCATTTTTGATTAAAAC-GATCATAATTTG-
* * * * * * * *
223931 AGGATTGCATTAGGAAACATGAAGTA-AAAGTCATCCGTTGATAAGAAAAGTTAATATATAGTCA
192 ATGTTTGCATTAGGAAACGTGAAG-AGAAAGCCATTCATTGATAAGAAAAG-TCATTTATAGTCA
* * ** * * * ** * * * *
223995 -CTAACGCATTCAAAATCCTAGTCACTCATTTTAATTAGTTTTATAA-TTTGATAAAAGATTTTA
255 TCT-ATGCTTTTGAAAGCCTTGTTACTCGCTTTAAATAGTTTTGTAACTTT-ATAAATGATTGTA
* * **
224058 AATCAAAATTTTTTTCTTTTTTG
318 AAT--TATTTTTTTTAATTTTTG
* * * *** * * ** * *
224081 GTTAGAATATATTGTAATTGGATGTTTTCAAT-AGGAAACATGAAGCAAAAGCCATGCATTGACA
1 GTTAAAACAGACCATAATTTGATGTTTGC-ATCAACAAACATGAAGCGAAAGCCATCCATTGACA
* * * * *
224145 AGAAAAGTCT-ATTTATAGTCACTTATGCCTTCAAAAGCCTAGTAACTCGTTTCAAATGGTTTTA
65 AGAAAAATCTCATTTATAGTCACCTATGCCTTCAAAAGCCTAGTAACTTGCTTCAAATGATTTTA
* * * * *
224209 TAGTCCTATAAATGATTTCAAATCAAAATATTTTTCATTTTT-AGTTAAAACAAATCACAATTTG
130 TAGTCTTATAAATGATTTTAAATAAAAAT-TTTTTCATTTTTGA-TTAAAAC-GATCATAATTTG
* * * * * * * *
224273 ATGTTAGCATTAAGAAACATGAACCA-AAAGTCATCCATTGATAAAAAAAGTCCATTTATAGCCA
192 ATGTTTGCATTAGGAAACGTGAA-GAGAAAGCCATTCATTGATAAGAAAAGT-CATTTATAGTCA
* * * * * * * * * * *
224337 T-TCATGCCTTCGAAAGTCTTGTTAATTGCTTTGAGTGGATTTATAACTTTATAAATGATTTTAA
255 TCT-ATGCTTTTGAAAGCCTTGTTACTCGCTTTAAATAGTTTTGTAACTTTATAAATGATTGTAA
* * *
224401 ATTCAATTATTTTTCATTTTGG
319 ATT--ATTTTTTTTAATTTTTG
* * * * * *
224423 GTTAAAATAGATCATAA-TT--TGTTTGCATTAAGAAACCTGAAG-TAGAAGCCATCCATTGACA
1 GTTAAAACAGACCATAATTTGATGTTTGCATCAACAAACATGAAGCGA-AAGCCATCCATTGACA
224484 AGAAAA
65 AGAAAA
224490 GCCACTCATG
Statistics
Matches: 1406, Mismatches: 304, Indels: 126
0.77 0.17 0.07
Matches are distributed among these distances:
338 3 0.00
339 68 0.05
340 646 0.46
341 133 0.09
342 402 0.29
343 153 0.11
344 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.37
Consensus pattern (338 bp):
GTTAAAACAGACCATAATTTGATGTTTGCATCAACAAACATGAAGCGAAAGCCATCCATTGACAA
GAAAAATCTCATTTATAGTCACCTATGCCTTCAAAAGCCTAGTAACTTGCTTCAAATGATTTTAT
AGTCTTATAAATGATTTTAAATAAAAATTTTTTCATTTTTGATTAAAACGATCATAATTTGATGT
TTGCATTAGGAAACGTGAAGAGAAAGCCATTCATTGATAAGAAAAGTCATTTATAGTCATCTATG
CTTTTGAAAGCCTTGTTACTCGCTTTAAATAGTTTTGTAACTTTATAAATGATTGTAAATTATTT
TTTTTAATTTTTG
Found at i:226456 original size:170 final size:172
Alignment explanation
Indices: 226105--226598 Score: 456
Period size: 170 Copynumber: 2.9 Consensus size: 172
226095 TTACTCTGTT
* * * *
226105 GTTACTTGCTTTAAATTGTTTTAAAATCTCT-TAAATGATTTTAAATTGAA--TTTTTTTCGTTA
1 GTTACTTGCTTTAAATGGTTTCATAATCT-TACAAATGATTTTAAATTGAATTTTTTTTTCGTTA
* * * *
226167 TAGGTTTAAACAGATCATAATTTGTTGTTTTCATTGAGAAACATGAAGCGAAAGCGATCTATTGA
65 TAGGTTAAAACAGATCATAATTTGTTGTTTACATTGAGAAACATGAAGCAAAAGCGATCCATTGA
* * * * * *
226232 CAAGAAAAGTTCATTTGTAGTCTCTTATGCCTTTGACAAGCTT
130 CAAGAAAAGTCCACTTATAGTCACTCATGCCTTTGACAAGCTA
* *
226275 GTTACTTGCTTTAAGTGGTTTCATAA-CTTTATAAATTG-TTTTAAATTGAATTTTTTTTTAC-T
1 GTTACTTGCTTTAAATGGTTTCATAATC-TTACAAA-TGATTTTAAATTGAATTTTTTTTT-CGT
* * * *
226337 T-TAGGTTAAAATAGATCATAATTTGATT-TTTACATTGGGAGACGA-GAAGCAAAAGCTATCCA
63 TATAGGTTAAAACAGATCATAATTTG-TTGTTTACATTGAGAAAC-ATGAAGCAAAAGCGATCCA
*
226399 TTGACAAG-AAAGTCCACTTATAGTCACTCATGCTTTTGA-AAGCGTA
126 TTGACAAGAAAAGTCCACTTATAGTCACTCATGCCTTTGACAAGC-TA
* * * *
226445 GTTATTTGCTTTAAATGGTTTTATTATCTTACAAATGATTTTAAATTTGAATTTTTTTTCTCATT
1 GTTACTTGCTTTAAATGGTTTCATAATCTTACAAATGATTTTAAA-TTGAATTTTTTTT-TCGTT
* * * * ** * * * * *
226510 TTTGGTTAAAACATG-TCAAAATTTGTTGTTTGCATCAAGAAACCTGTAGCACAATCCATCCATT
64 ATAGGTTAAAACA-GATCATAATTTGTTGTTTACATTGAGAAACATGAAGCAAAAGCGATCCATT
* *
226574 -AGCAAGAAAAGTTCACCTATAGTCA
128 GA-CAAGAAAAGTCCACTTATAGTCA
226599 ATCCATCCAT
Statistics
Matches: 265, Mismatches: 39, Indels: 36
0.78 0.11 0.11
Matches are distributed among these distances:
169 8 0.03
170 100 0.38
171 73 0.28
172 18 0.07
173 49 0.18
174 17 0.06
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.41
Consensus pattern (172 bp):
GTTACTTGCTTTAAATGGTTTCATAATCTTACAAATGATTTTAAATTGAATTTTTTTTTCGTTAT
AGGTTAAAACAGATCATAATTTGTTGTTTACATTGAGAAACATGAAGCAAAAGCGATCCATTGAC
AAGAAAAGTCCACTTATAGTCACTCATGCCTTTGACAAGCTA
Found at i:226497 original size:171 final size:171
Alignment explanation
Indices: 226105--226966 Score: 483
Period size: 161 Copynumber: 5.1 Consensus size: 171
226095 TTACTCTGTT
* *
226105 GTTACTTGCTTTAAATTGTTTTAAAATCTCT-TAAATGATTTTAAATTGAA--TTTTTTTCGTTA
1 GTTACTTGCTTTAAATGGTTTT-ATATCT-TATAAATGATTTTAAATTGAATTTTTTTTTCGTTA
* * * *
226167 TAGGTTTAAACAGATCATAATTTGTTGTTTTCATTGAGAAACATGAAGCGAAAGCGATCTATTGA
64 TAGGTTAAAACAGATCATAATTTGTTGTTTACATTGAGAAACATGAAGCAAAAGCGATCCATTGA
* * * * * *
226232 CAAGAAAAGTTCATTTGTAGTCTCTTATGCCTTTGACAAGCTT
129 CAAGAAAAGTCCACTTATAGTCACTCATGCCTTTGACAAGCTA
* * *
226275 GTTACTTGCTTTAAGTGGTTTCATAACTTTATAAATTG-TTTTAAATTGAATTTTTTTTTAC-TT
1 GTTACTTGCTTTAAATGGTTTTATATC-TTATAAA-TGATTTTAAATTGAATTTTTTTTT-CGTT
* * * *
226338 -TAGGTTAAAATAGATCATAATTTGATT-TTTACATTGGGAGACGA-GAAGCAAAAGCTATCCAT
63 ATAGGTTAAAACAGATCATAATTTG-TTGTTTACATTGAGAAAC-ATGAAGCAAAAGCGATCCAT
*
226400 TGACAAG-AAAGTCCACTTATAGTCACTCATGCTTTTGA-AAGCGTA
126 TGACAAGAAAAGTCCACTTATAGTCACTCATGCCTTTGACAAGC-TA
* * *
226445 GTTATTTGCTTTAAATGGTTTTATTATCTTACAAATGATTTTAAATTTGAATTTTTTTTCTCATT
1 GTTACTTGCTTTAAATGGTTTTA-TATCTTATAAATGATTTTAAA-TTGAATTTTTTTT-TCGTT
* * * * ** * * * * *
226510 TTTGGTTAAAACATG-TCAAAATTTGTTGTTTGCATCAAGAAACCTGTAGCACAATCCATCCATT
63 ATAGGTTAAAACA-GATCATAATTTGTTGTTTACATTGAGAAACATGAAGCAAAAGCGATCCATT
* * * * *
226574 -AGCAAGAAAAGTTCACCTATAGTCA---AT-CC-AT--CCA--TT
127 GA-CAAGAAAAGTCCACTTATAGTCACTCATGCCTTTGACAAGCTA
** * * * * * *
226610 GTTACTCACTTTAAGTAGTTTTATAACTTTATAAATGATTTTAAGTTGAA-TTTTTCTTCATT-T
1 GTTACTTGCTTTAAATGGTTTTATATC-TTATAAATGATTTTAAATTGAATTTTTTTTTCGTTAT
*** * * * ** *
226673 TTTTTAGAAA-AGATTATAATTTGTTGTTTTGCA-TCAGGAAATGTGAAGTAAAAGTC-ATCCAT
65 AGGTTA-AAACAGATCATAATTTGTTG-TTTACATTGA-GAAACATGAAGCAAAAG-CGATCCAT
* * * * *
226735 TGACAAGAAAAGTCCATTTATGGTGACTTATGCCTTCGA-AAGCTTA
126 TGACAAGAAAAGTCCACTTATAGTCACTCATGCCTTTGACAAGC-TA
* * *
226781 GTTACTCGCTTT-AA-------ATATCTTATAAATAAGTTTAAATT-AA-TTTTTTTTCAGTT-T
1 GTTACTTGCTTTAAATGGTTTTATATCTTATAAATGATTTTAAATTGAATTTTTTTTTC-GTTAT
* * * * ** ** *
226835 TGGTTGAAACATATCCTAATTTAATGTTTGTATCT-AGAAACATGAAGCAAAAGCTAGT-CATTG
65 AGGTTAAAACAGATCATAATTTGTTGTTTACAT-TGAGAAACATGAAGCAAAAGCGA-TCCATTG
* * * * * * *
226898 ATAAGAAAAATCTATTTATAGGCACTTATGCCTTCGA-AAGGCTA
128 ACAAGAAAAGTCCACTTATAGTCACTCATGCCTTTGACAA-GCTA
* * *
226942 GTAACTTGCTTCAAATTGTTTTATA
1 GTTACTTGCTTTAAATGGTTTTATA
226967 GACCAATAAA
Statistics
Matches: 536, Mismatches: 103, Indels: 107
0.72 0.14 0.14
Matches are distributed among these distances:
160 2 0.00
161 100 0.19
162 89 0.17
163 13 0.02
164 8 0.01
165 36 0.07
166 2 0.00
168 2 0.00
169 14 0.03
170 97 0.18
171 89 0.17
172 18 0.03
173 49 0.09
174 17 0.03
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.41
Consensus pattern (171 bp):
GTTACTTGCTTTAAATGGTTTTATATCTTATAAATGATTTTAAATTGAATTTTTTTTTCGTTATA
GGTTAAAACAGATCATAATTTGTTGTTTACATTGAGAAACATGAAGCAAAAGCGATCCATTGACA
AGAAAAGTCCACTTATAGTCACTCATGCCTTTGACAAGCTA
Found at i:227587 original size:156 final size:162
Alignment explanation
Indices: 227313--228215 Score: 472
Period size: 172 Copynumber: 5.4 Consensus size: 162
227303 TTTATCACTT
* * * * *
227313 TATAAATGATTTTAAATTAATTTGTTTTCAATTTTGATTAAAATAGATTATAATTTGATGTTTAC
1 TATAAATGATTTTAAATTAATTT-TTTTCTATTTTTATTAAAACAGATCATAATTTGATGTTTGC
* * * ** *
227378 ATTA-AGAAATGTGAAGTGAAAGCCACTCATTAAGGAGAAAAATCTATCTATAGTCACTCATGCT
65 ATCAGA-AAATGTGAAGCGAAAGCCATTCATTAACAAGAAAAATCCAT-TATAGTCACTCATGCT
* *
227442 TTCGAAAGCCTAGTA-G-TT-T-G-CTT-TAGC-C
128 TTCAAAAGCCTAGTATGCTTATGGTCTTGTAACTC
* *
227470 TATAAATGATTTTAAATTGATTTTTTT-TATGTTTTATTAAAACATATCATAATTTGATGTTTGC
1 TATAAATGATTTTAAATTAATTTTTTTCTAT-TTTTATTAAAACAGATCATAATTTGATGTTTGC
* * *
227534 ATCAGAAAATGTGAAGCGAAAGTCATTCATTGATAAGAAAAATCCATTAATAGTCAC-CTATAGC
65 ATCAGAAAATGTGAAGCGAAAGCCATTCATTAACAAGAAAAATCCATT-ATAGTCACTC-AT-GC
* * *
227598 -TTCAAAAGCCTTGTTACTTGCTTTAAGTGGTTTTGTAACTT
127 TTTCAAAAGCCTAG-TA--TGC-TT-A-TGGTCTTGTAACTC
* * * * *
227639 TGTAAATTATTTTAAATTCATTTTGTTTCTCATTTTTTGTTAAAACAGATCACAATTTGATGTTT
1 TATAAATGATTTTAAATTAATTTT-TTTCT-A-TTTTTATTAAAACAGATCATAATTTGATGTTT
* *
227704 GCATTGAGAAACA--TGAAGCAAAAGCCATTCATTAACAAGAAAAATCCATTTATAGTCACTCAT
63 GCA-TCAGAAA-ATGTGAAGCGAAAGCCATTCATTAACAAGAAAAATCCA-TTATAGTCACTCAT
* * *
227767 ACTTTCAAAAGCCTAGTAACTCGCTTTAAATGGTTTTGT-AGTCC
125 GCTTTCAAAAGCCTAGT-A-T-GC-TT--ATGGTCTTGTAACT-C
* * * * ** * *
227811 CATTATTGATTTTAAATCAAAATTTTTTT-TATTTCTCGTTAAAACAGATCAAAATTGGATGTTT
1 TATAAATGATTTTAAAT--TAATTTTTTTCTATTT-TTATTAAAACAGATCATAATTTGATGTTT
* * * * * * * * *
227875 GTAAT-GGAAAATGTGAAGTGAAAGCTATCCATTCACAAGAAAAGTCCATTTATAGTTACTGATG
63 G-CATCAGAAAATGTGAAGCGAAAGCCATTCATTAACAAGAAAAATCCA-TTATAGTCACTCATG
* * * *
227939 CCTTT-AAAAGCCTTATTACATGCTTTAAAAGGAT-TTATAACTT
126 -CTTTCAAAAGCC-TAGT--ATGC-TT--ATGG-TCTTGTAACTC
* * * *
227982 TATATATGATTTTCAAA-TAATTTTTTT-TATTTTTGATGAAAACAAATCAT-ATGTTGATGGTT
1 TATAAATGATTTT-AAATTAATTTTTTTCTATTTTT-ATTAAAACAGATCATAAT-TTGATGTTT
* * * * * * * *
228044 GCAT-TGAGAAATGTGAAGTG-AAGCCATCCATTGATAAGAAAAGTCTATTTATAGTAACTCATG
63 GCATCAGA-AAATGTGAAGCGAAAGCCATTCATTAACAAGAAAAATCCA-TTATAGTCACTCATG
* * * ** * *
228107 CCTTCAAAAGCTTATTTACTTGCTTCAAATTATTTTATAA-TC
126 CTTTCAAAAGCCTA-GTA--TGCTT---ATGGTCTTGTAACTC
* * * *
228149 TTATAAATGATTTCAAATTGAAATTTTTTT-T-TTTTTGTTAAAACAGATCATCATTTGTTGTTT
1 -TATAAATGATTTTAAATT--AATTTTTTTCTATTTTTATTAAAACAGATCATAATTTGATGTTT
228212 GCAT
63 GCAT
228216 TGAGAAATGT
Statistics
Matches: 593, Mismatches: 96, Indels: 103
0.75 0.12 0.13
Matches are distributed among these distances:
155 4 0.01
156 90 0.15
157 27 0.05
160 1 0.00
162 2 0.00
165 1 0.00
166 2 0.00
167 14 0.02
168 102 0.17
169 74 0.12
170 20 0.03
171 106 0.18
172 128 0.22
173 16 0.03
174 6 0.01
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40
Consensus pattern (162 bp):
TATAAATGATTTTAAATTAATTTTTTTCTATTTTTATTAAAACAGATCATAATTTGATGTTTGCA
TCAGAAAATGTGAAGCGAAAGCCATTCATTAACAAGAAAAATCCATTATAGTCACTCATGCTTTC
AAAAGCCTAGTATGCTTATGGTCTTGTAACTC
Found at i:227966 original size:171 final size:166
Alignment explanation
Indices: 227476--228212 Score: 492
Period size: 172 Copynumber: 4.3 Consensus size: 166
227466 AGCCTATAAA
** * * * * *
227476 TGATTTTAAATTGATTTTTTTTATGTTTTATTAAAACATATCATAATTTGATGTTTGCATCAGAA
1 TGATTTTAAATAAATTTTTTTTAT-TTTTGTTAAAACAGATCAAAATTTGATGTTTGAAT-GGAA
* * * * * * * * *
227541 AATGTGAAGCGAAAGTCATTCATTGATAAGAAAAATCCATTAATAGTCAC-CTATAG-CTTCAAA
64 AATGTGAAGTGAAAGCCATCCATTAACAAGAAAAGTCCATTTATAGTAACTC-AT-GCCTTTAAA
* * * * * *
227604 AGCCTTGTTACTTGCTTTAAGTGGTTTTGTA-ACTTTGTAAAT
127 AGCCTTATTACATGCTTTAAATGGTTTTATATCCTAT-T--AT
** * * *
227646 T-ATTTTAAATTCATTTTGTTTCTCATTTTTTGTTAAAACAGATCACAATTTGATGTTTGCATTG
1 TGATTTTAAATAAATTTT-TTT-T-A-TTTTTGTTAAAACAGATCAAAATTTGATGTTTGAATGG
** ** * * * *
227710 AGAAACATGAAGCAAAAGCCATTCATTAACAAGAAAAATCCATTTATAGTCACTCAT-ACTTTCA
62 A-AAATGTGAAGTGAAAGCCATCCATTAACAAGAAAAGTCCATTTATAGTAACTCATGCCTTT-A
* * *
227774 AAAGCC-TAGTA-ACTCGCTTTAAATGGTTTTGTAGTCCCATTAT
125 AAAGCCTTATTACA-T-GCTTTAAATGGTTTTATA-TCCTATTAT
* *
227817 TGATTTTAAATCAAAATTTTTTTTATTTCTCGTTAAAACAGATCAAAATTGGATGTTTGTAATGG
1 TGATTTTAAAT--AAATTTTTTTTATTT-TTGTTAAAACAGATCAAAATTTGATGTTTG-AATGG
* * * *
227882 AAAATGTGAAGTGAAAGCTATCCATTCACAAGAAAAGTCCATTTATAGTTACTGATGCCTTTAAA
62 AAAATGTGAAGTGAAAGCCATCCATTAACAAGAAAAGTCCATTTATAGTAACTCATGCCTTTAAA
* * * *
227947 AGCCTTATTACATGCTTTAAAAGGATTTATA-ACTTTATAT
127 AGCCTTATTACATGCTTTAAATGGTTTTATATCCTAT-TAT
* * * * * *
227987 ATGATTTTCAAAT-AATTTTTTTTATTTTTGATGAAAACAAATC-ATATGTTGATGGTTGCATTG
1 -TGATTTT-AAATAAATTTTTTTTATTTTTG-TTAAAACAGATCAAAAT-TTGATGTTTGAATGG
* * * *
228050 AGAAATGTGAAGTG-AAGCCATCCATTGATAAGAAAAGTCTATTTATAGTAACTCATGCCTTCAA
62 A-AAATGTGAAGTGAAAGCCATCCATTAACAAGAAAAGTCCATTTATAGTAACTCATGCCTTTAA
* * ** * * *
228114 AAG-CTTATTTACTTGCTTCAAATTATTTTATAATCTTATAAA
126 AAGCCTTA-TTACATGCTTTAAATGGTTTTAT-ATCCTATTAT
* ** *
228156 TGATTTCAAATTGAAATTTTTTTT-TTTTTGTTAAAACAGATCATCATTTGTTGTTTG
1 TGATTTTAAA-T-AAATTTTTTTTATTTTTGTTAAAACAGATCAAAATTTGATGTTTG
228213 CATTGAGAAA
Statistics
Matches: 456, Mismatches: 78, Indels: 68
0.76 0.13 0.11
Matches are distributed among these distances:
167 7 0.02
168 97 0.21
169 71 0.16
170 22 0.05
171 115 0.25
172 130 0.29
173 7 0.02
174 7 0.02
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.41
Consensus pattern (166 bp):
TGATTTTAAATAAATTTTTTTTATTTTTGTTAAAACAGATCAAAATTTGATGTTTGAATGGAAAA
TGTGAAGTGAAAGCCATCCATTAACAAGAAAAGTCCATTTATAGTAACTCATGCCTTTAAAAGCC
TTATTACATGCTTTAAATGGTTTTATATCCTATTAT
Found at i:232390 original size:170 final size:169
Alignment explanation
Indices: 231691--235966 Score: 650
Period size: 171 Copynumber: 25.1 Consensus size: 169
231681 TCATCTGTTG
* * * * * *
231691 ACAAGAAAAGTCTATTTATAGTCA-TTAATTCCTTCGAAAGCCTAGTTAGTCACTTTAAATAGGT
1 ACAAGAAAAGTCCATTTATAGTCACTT-ATACATTCGAAGGCCTAGTTACTCACGTTAAATA-GT
* * *
231755 TTTATAATCTTATAAAT-AATTTTAAAATTGAATTTTTCTCATTTTTGGTTAAAACAAA-TTCTA
64 TTTATAATCTTATAAATGAA-TTT-AAATTGATTTTTTTTCATTTTTGGTTAAAACAAACCT-TA
* * *
231818 ATTTGATGTTTGCAT--GGCCAAACATGAAGCAAAAGCTATCCATTA
126 ATTAGATGTTT-CATAAGG--AAACGTGAAGCAAAAGCCATCCATTA
* * * * * * * * * *
231863 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGTC-ATTTTACTCACTTTAAATGGAC
1 ACAAGAAAAGTCCATTTATAGTCACTTATACATTCGAAGGCCTA-GTTACTCACGTTAAATAG-T
*** * * * * *
231927 TTT-TAA-CTTTATAAATG-ATTTTTGTCTGAACTATTTTACATTTTT--TTAAAA-ATAGATCA
64 TTTATAATC-TTATAAATGAATTTAAAT-TG-ATTTTTTTTCATTTTTGGTTAAAACA-A-ACCT
* * * * *
231986 GAATTTGAT-TCTTACATCAA-GAAACATGAAGCGAAAGCCATTCATTA
124 TAATTAGATGT-TT-CAT-AAGGAAACGTGAAGCAAAAGCCATCCATTA
* * * * * * *
232033 ACAAGAAAAGTCCATTTATAGTCACTTATGCCTTTGAAGGCATATTTACT--TGTTTCAAAGAGT
1 ACAAGAAAAGTCCATTTATAGTCACTTATACATTCGAAGGCCTAGTTACTCACG-TT-AAATAGT
* * * * *
232096 TTCATAATCTTGTAAAT-AATTTCAAATTGAATTTTTTTTCCTTTTTGGTT-AAA-AAAGCATAA
64 TTTATAATCTTATAAATGAATTT-AAATTG-ATTTTTTTTCATTTTTGGTTAAAACAAACCTTAA
* * * * *
232158 TTTGTTGTTTGCATAAGGAAACGTGAAGTAAAAGTCATCCATTG
127 TTAGATGTTT-CATAAGGAAACGTGAAGCAAAAGCCATCCATTA
* * * *
232202 ATAAGAAAAGTCTATTTATAATGACTTATACATTCGAAGGCCTAGTTACTCACGTTAAATAGTTT
1 ACAAGAAAAGTCCATTTATAGTCACTTATACATTCGAAGGCCTAGTTACTCACGTTAAATAGTTT
* *
232267 TATAATCTTATAAATGAGTTTAAATTGATTTTTTTTCATTTTTGGTTAAAACAAACCTTAATTAA
66 TATAATCTTATAAATGAATTTAAATTGATTTTTTTTCATTTTTGGTTAAAACAAACCTTAATTAG
* * *
232332 ATGTTTCAATTAGGAAATGTGAAGCAAAAGGCATCCATTA
131 ATGTTTC-ATAAGGAAACGTGAAGCAAAAGCCATCCATTA
* * * * * *
232372 ACAAGAAAAGTCTATTTATAGTCA-TTCATACATTTC-AAAGCCTAGTTATTCACTTTCAATGGT
1 ACAAGAAAAGTCCATTTATAGTCACTT-ATACA-TTCGAAGGCCTAGTTACTCACGTTAAATAGT
* * ** * * * * * *
232435 TTTATAATCTAATAAATGACTTTAAAGTAAAATTATTTTCATATCTAG-TAAGAACAAATCTTAA
64 TTTATAATCTTATAAATGAATTTAAA-TTGATTTTTTTTCATTTTTGGTTAA-AACAAACCTTAA
* * * *
232499 TTGGATGTTTGTATCAA-GAAACATGAAGCGAAAGCCATCCATTA
127 TTAGATGTTT-CAT-AAGGAAACGTGAAGCAAAAGCCATCCATTA
* * * * * ** * * * *
232543 ACAAGAAAAGTCCATTTATAGTTA-TATATGCCTTCGAAAGTCTTA-CAAGTCACTTTCAGT-GA
1 ACAAGAAAAGTCCATTTATAGTCACT-TATACATTCG-AAGGCCTAGTTACTCACGTTAAATAG-
* * * * * * * *
232605 TTTTGTAA-CTTTATAAATTATTTTAAATTGTTTTTTTTTCATTTTTAGTTAAAACATATCATAA
63 TTTTATAATC-TTATAAATGAATTTAAATTGATTTTTTTTCATTTTTGGTTAAAACAAACCTTAA
* ** * * * *** * * * *
232669 TTTGACATTTGGATCAGGAAAAGTGAAGTGCAGGACATTCATTG
127 TTAGATGTTT-CATAAGGAAACGTGAAGCAAAAGCCATCCATTA
* ** * * * * * * ** *
232713 ACAAGAAAAATTTATTTGTTGTCACTCA-AGCCTTCGACA-ACCCAG-TACCTC-TTTTCAAGTA
1 ACAAGAAAAGTCCATTTATAGTCACTTATA-CATTCGA-AGGCCTAGTTA-CTCACGTT-AAATA
* * * * * *** **
232774 GTTTTATAATCCTATTAATGATTTTAAATCGAAATGTTTTTT-ATTTTAATTTAAAA-AGATATT
62 GTTTTATAATCTTATAAATGAATTTAAATTG--ATTTTTTTTCATTTTTGGTTAAAACA-A-ACC
* * ** *
232837 TTAATTGGATGTTTGCATCAA-GAAACATGAAGGGAAAGCCTTCCATGT-
123 TTAATTAGATGTTT-CAT-AAGGAAACGTGAAGCAAAAGCCATCCAT-TA
* * * * * * * * * * * * * * * *
232885 ACAAGAAAAATTCATATCTACTTAATCATGCCTTCAAAAGCCTTGTTACACGCTTTAAA-AGGTT
1 ACAAGAAAAGTCCATTTATAGTCACTTATACATTCGAAGGCCTAGTTACTCACGTTAAATA-GTT
* ** * * * *
232949 TTATAA-CTTTATAAATGATTTTAAATTGAATTCCATTTT-ATTTTTAGTTAAAATAGATCATAT
65 TTATAATC-TTATAAATGAATTTAAATTG-ATT-TTTTTTCATTTTTGGTTAAAACA-AACCT-T
* * ** * ** * *
233012 AATTTGTTGTTTGGGT-AGAGAAACATGAAGTGAAAGACATCCATTG
125 AATTAGATGTTT-CATAAG-GAAACGTGAAGCAAAAGCCATCCATTA
* * * * * * * *
233058 AGAAGAAAAGTCTATCTATAGTCACTCAT--GTCTC-AAGTCC-ATTTATAGTCATCGATGCATT
1 ACAAGAAAAGTCCATTTATAGTCACTTATACAT-TCGAAGGCCTA-GT-TA--C-TC-A--CGTT
* * * * * * * * * * * *
233119 CAAACGACTAGTTAGTCA-CTT-CAAATGATTTTAAAAATGAATTATTCTAATTTTTAGTTAAAA
57 -AAA-TAGT-TTTA-TAATCTTATAAATGAATTT-AAATTGATTTTTTTTCATTTTTGGTTAAAA
* * * * * * * *
233182 CAGATCATAATTTGCTGTTTACATCAGGAAACGTGAAGCAAAAGCTATCCATTG
117 CAAACCTTAATTAGATGTTT-CATAAGGAAACGTGAAGCAAAAGCCATCCATTA
* * * ** * * * * * * * *
233236 ATAAGTAAAGTCCATATATAGTCACTCGTGCCTTCGAAAGCCTTGTTA--CAAGTTTTAAGTGGA
1 ACAAGAAAAGTCCATTTATAGTCACTTATACATTCGAAGGCCTAGTTACTCACG--TTAAATAGT
* * * * * ** *
233299 TTCATAA-CTTTATAAATGATTTTAGATTGAATTATTTTGT-ATTTTTAGTTAAAGTAGA-CTAT
64 TTTATAATC-TTATAAATGAATTTAAATTG-ATT-TTTTTTCATTTTTGGTTAAAACAAACCT-T
* * * * * * * *
233361 AATTTGATGTTT-GTAGGGGACACATAAAGCGAAAGCCATCCATTG
125 AATTAGATGTTTCATA-AGGAAACGTGAAGCAAAAGCCATCCATTA
* * * * ** * * **
233406 ACAAGAAAGGTCCATTTATAGTTACTTATGCCTTTTAAAGTCTTA-TTACTTGC-TTAAAGT-GA
1 ACAAGAAAAGTCCATTTATAGTCACTTAT-ACATTCGAAGGCCTAGTTACTCACGTTAAA-TAG-
* * * * *
233468 TTTTATAA-CTTTATAAAT-AATTTTAAATTGAATTTGTTTAT-ATTTTTAGTTAAAACAGATCA
63 TTTTATAATC-TTATAAATGAA-TTTAAATTG-ATTT-TTTTTCATTTTTGGTTAAAACAAACCT
* * * * *
233530 TAATTTGATGTTTGCAT-TGAGAAACATGAAGCCAAAGCCATCCATTG
124 TAATTAGATGTTT-CATAAG-GAAACGTGAAGCAAAAGCCATCCATTA
* * * ** * *
233577 ACAAGAAAAGTCTATTTGTAGTCACTTATACCTTTAAAAGCCTATTTACTCAC-TTCAAAT-GAT
1 ACAAGAAAAGTCCATTTATAGTCACTTATACATTCGAAGGCCTAGTTACTCACGTT-AAATAG-T
* * **
233640 TTTATAATCTTATAAATG-ATTGCAAATTGATTGTTTTTTCATTTTTGATT--AACAAAGATTAT
64 TTTATAATCTTATAAATGAATT-TAAATTGATT-TTTTTTCATTTTTGGTTAAAACAAACCTTA-
* * * *
233702 AGTTTGCTGTTTACATTAGGAAACGTGAAGCGAAAA-CCATCCATTG
126 A-TTAGATGTTT-CATAAGGAAACGTGAAGC-AAAAGCCATCCATTA
** * * * * ** * * * **** * * *
233748 GTAACAAAAGTCTA-TTATAGTCACTCATACCTTTAAAAGCCTTGCTACTTGTTTTAAGTGGATT
1 ACAAGAAAAGTCCATTTATAGTCACTTATACATTCGAAGGCCTAGTTACTCACGTTAAATAGTTT
* * * * * * * * * * * *
233812 TCTAA-CTT-T---TTAAATTGAATTG--TTTTTTACGTTTTTCGTTAAAATAGATCAT-ATTTG
66 TATAATCTTATAAATGAATTTAAATTGATTTTTTTTCATTTTTGGTTAAAACAAACCTTAATTAG
* *
233869 ATGTTTGAATCAA-GAAAC-TGAAGCAAAA-CCATCCATTT
131 ATGTTT-CAT-AAGGAAACGTGAAGCAAAAGCCATCCATTA
* * * * * ** * * ** *
233907 ACAATAAAAGTCTATTTATAGTCACTCATGCCTTTAAAAGCCTTGTTACTCATTTTAAATAGATT
1 ACAAGAAAAGTCCATTTATAGTCACTTATACATTCGAAGGCCTAGTTACTCACGTTAAATAGTTT
* * * * * * * *
233972 TATAA-CTTTTTAAATTATTTTAAATTAATTTTTTTTACA-TTTTAGTTAAAACATATCATAATT
66 TATAATC-TTATAAATGAATTTAAATTGATTTTTTTT-CATTTTTGGTTAAAACAAACCTTAA-T
* * * *
234035 TA-ATGTTTGCATCAA-GAATCATGAAGTGAAAAG-CATCCATTG
128 TAGATGTTT-CAT-AAGGAAACGTGAAG-CAAAAGCCATCCATTA
* * * ** * * * * * * * *
234077 GCAAAAAAAGTCCATTTATAATGGCTCATGCCTTCAAAAAGCCTATTTACTCGCTTTAAATAGTT
1 ACAAGAAAAGTCCATTTATAGTCACTTATACATTC-GAAGGCCTAGTTACTCACGTTAAATAGTT
* * * * * ***
234142 TTATTATCTTAAAAATG-ATTTCAAATTGATTTTTTTTTAATTTTTGGTTAAAATAGATAATAAT
65 TTATAATCTTATAAATGAATTT-AAATTGA-TTTTTTTTCATTTTTGGTTAAAACAAACCTTAAT
* * * * *
234206 TTGTTATTTGCATTAA-GAAACATGAAGCGAAAA-CCATCCATTG
128 TAGATGTTT-CA-TAAGGAAACGTGAAGC-AAAAGCCATCCATTA
* * * * ** * * * * * **
234249 AGAAGAAGACTCCATTTATAGCCACAAATGTC-TTCAAAAGCCTAATTAGTCATTTTAAATAGTT
1 ACAAGAAAAGTCCATTTATAGTCACTTAT-ACATTCGAAGGCCTAGTTACTCACGTTAAATAGTT
* ** * ** * ** * *
234313 TTATAATCTTATAAATGATTTTAAAATTGAAGTTTTCTCATTTTTTCTTAACACGGATCATAATT
65 TTATAATCTTATAAATGAATTT-AAATTGATTTTTTTTCATTTTTGGTTAAAACAAACCTTAATT
* * * * *
234378 TGATGTTTGCAT-CGGAAAACATGAAGCAAAAGCCATCTATTG
129 AGATGTTT-CATAAGG-AAACGTGAAGCAAAAGCCATCCATTA
* ** * * * ** * * ** *
234420 ACAAGAAAAG-CTCATTTATAGTTACCGATGCCTTCAAAAACCTATTTAGTCATTTTAAATGGTT
1 ACAAGAAAAGTC-CATTTATAGTCACTTATACATTCGAAGGCCTAGTTACTCACGTTAAATAGTT
* * * ** *
234484 TTATAATCTTAGAAAT-AATTTTAAAATTGAATTTTCTT-ATTTTTGGTTAACGCAAA-TTATAA
65 TTATAATCTTATAAATGAA-TTT-AAATTGATTTTTTTTCATTTTTGGTTAAAACAAACCT-TAA
* * * ** ** *
234546 TTTGATGTTTACAT-GGGAAAATGTGAAGTTAAAGTGATCCATTG
127 TTAGATGTTT-CATAAGG-AAACGTGAAGCAAAAGCCATCCATTA
* * * * * * * *
234590 ACAA-AGAAAGCCCATTTATAGTCTCTTATGTCA-TCGAAAGTCTAG-TAGGTCACTTTAAA-CG
1 ACAAGA-AAAGTCCATTTATAGTCACTTAT-ACATTCGAAGGCCTAGTTA-CTCACGTTAAATAG
* * * * * ** * * *
234651 ATTTTATAATCCTATGAATGATTTTAAAATTGAATTATTCTT-ATTTTTTATTAAAACAGATCAT
63 -TTTTATAATCTTATAAATGAATTT-AAATTG-ATTTTTTTTCATTTTTGGTTAAAACAAACCTT
* * * * *
234715 AATTTGATGTTAACTTCAA-GAAACGCT-AAGTAAAAGCCATCCACTA
125 AATTAGATGTT-TCAT-AAGGAAACG-TGAAGCAAAAGCCATCCATTA
* * * * * * * * * * * *
234761 AAAAGAAAAGTCTATTTATGGTCACTTATGCCTTCAAAAG-CTATGTTACTTGA-TTTAAGTGGA
1 ACAAGAAAAGTCCATTTATAGTCACTTATACATTCGAAGGCCTA-GTTAC-TCACGTTAAATAGT
* * * ** * * * *
234824 TTAATAA-CATTATAAATGATTTTAGATTGAATTATTTGAT-ATTTTTAGTTAAAATAAATCATA
64 TTTATAATC-TTATAAATGAATTTAAATTG-ATT-TTTTTTCATTTTTGGTTAAAACAAACCTTA
* * * * * *
234887 ATTTGATATTTACATAGGGAAATGTGAAGCGAAAGCCATCCATTG
126 ATTAGATGTTT-CATAAGGAAACGTGAAGCAAAAGCCATCCATTA
* * * * * *
234932 ACAA-AAAATGTCCATTTATAGTCAC-T-T--A---GAAAGCCTTGTTACTCACTTTAAGTGGAT
1 ACAAGAAAA-GTCCATTTATAGTCACTTATACATTCGAAGGCCTAGTTACTCACGTTAAATAGTT
* * * ** * ** * *
234989 TTATAA-CTTTTTAAAT-ACTTTTTAACTAAATTTTTTAT-ATTTTTGGTTAAAACTGATCGTAA
65 TTATAATC-TTATAAATGA--ATTTAAATTGATTTTTTTTCATTTTTGGTTAAAACAAACCTTAA
* * * * *
235051 TTTGATGTTTACATTAA-AAAATGTGAAGCGAAAGCCATTCCTTTA
127 TTAGATGTTT-CA-TAAGGAAACGTGAAGCAAAAGCCA-TCCATTA
* ** * * ** * * *
235096 ACAAGAAAAGTGCATTTATAGTCACTCCTGCCTTAAAAAGCCTATTTACTTAC-TTCAAAT-GAT
1 ACAAGAAAAGTCCATTTATAGTCACTTATACATTCGAAGGCCTAGTTACTCACGTT-AAATAG-T
* * * * * * * * **
235159 TTTGTAATCTTATAAAAGATTTTAAATTGAATTTTTTTCATTTCTAGTTAAAACATATCAAAATT
64 TTTATAATCTTATAAATGAATTTAAATTGATTTTTTTTCATTTTTGGTTAAAACAAACCTTAATT
*** * * * * * *
235224 TCTTGTTTGCATTAGGAAAGGCGAAGCGAAAA-TCATCCACTG
129 AGATGTTT-CATAAGGAAACGTGAAGC-AAAAGCCATCCATTA
* * * * * * * ** * *
235266 ATAAGAAAAGTCCATTTATAGTGACTAATGCCTTCGAAAGCCTAGTTAGTTGCTTTAAATGGTTT
1 ACAAGAAAAGTCCATTTATAGTCACTTATACATTCGAAGGCCTAGTTACTCACGTTAAATAGTTT
* ** * * ** * *
235331 TAGAATAGTATAGAA-GATTTTAAAATTGAATTTTGCTCATTTTTGGTTAAAACAAATCATAATT
66 TATAATCTTATA-AATGAATTT-AAATTGATTTTTTTTCATTTTTGGTTAAAACAAACCTTAATT
* * * * * * * *
235395 TGATATTTACGT-TGGCAAACATAAAGCAAAAGCCATGCATTG
129 AGATGTTT-CATAAGG-AAACGTGAAGCAAAAGCCATCCATTA
* * * * * * * ** ** * * * *
235437 ATAAGAAAACTCTATTTATAGTCACTCATGCCTTC-ATAGGCCTTGCCACTTGCTTTAAGTGGAT
1 ACAAGAAAAGTCCATTTATAGTCACTTATACATTCGA-AGGCCTAGTTACTCACGTTAAATAGTT
* * * ** * *
235501 TTATAAGT-TTTTAAAT-AATTTTAAA-TGAAATTGTTTTAT-ACTTTTGGTTAAAGTAAATCAT
65 TTATAA-TCTTATAAATGAA-TTTAAATTG--ATT-TTTTTTCATTTTTGGTTAAAACAAACCTT
* * * * ** ** *
235562 AATTTGATATTTGCTTTAGGAAA-AAGAAGCGTAAGCCATCCATTG
125 AATTAGATGTTT-CATAAGGAAACGTGAAGCAAAAGCCATCCATTA
* * ** * * * * * *
235607 ATAAGAAAAAAT-CATTTATAGTTGCTTATGCCTTCAAAAGCCTATTTACTCGC-TTCAAATAGT
1 ACAAG-AAAAGTCCATTTATAGTCACTTATACATTCGAAGGCCTAGTTACTCACGTT-AAATAGT
* * * * *
235670 TTTATAATCTTATAAATG-ATTTAAAATTAAATATTTTTT-ATTTTTTGATTAAAACAAATCATA
64 TTTATAATCTTATAAATGAATTT-AAATT-GATTTTTTTTCA-TTTTTGGTTAAAACAAACCTTA
* * * * * *
235733 ATTTGTTGTTTTCAT-AGGAAACAT-AGAGCATAAA-TCTTCCACTA
126 ATTAGATG-TTTCATAAGGAAACGTGA-AGCA-AAAGCCATCCATTA
* * * * *
235777 ACAAGAAAAGTCCA-TTATAGTCACTTATGTC-TTCGAAAGCCTAGTTAATCACTTTATATAGTT
1 ACAAGAAAAGTCCATTTATAGTCACTTAT-ACATTCGAAGGCCTAGTTACTCACGTTAAATAGTT
* * * ** * * * *
235840 TTGTAATCTTATAAATGATTTTAAAATTGAATGTTTCAT-ATTTTTGGTTAAAATAGATCATAAT
65 TTATAATCTTATAAATGAATTT-AAATTG-ATTTTTTTTCATTTTTGGTTAAAACAAACCTTAAT
* * * * ** * *
235904 TTGATGTTTACATTAGGAAACATCAAGTGAAAGACATCCATTG
128 TAGATGTTT-CATAAGGAAACGTGAAGCAAAAGCCATCCATTA
** *
235947 TTAAGAAAAGTTCATTTATA
1 ACAAGAAAAGTCCATTTATA
235967 TTTATTCAAT
Statistics
Matches: 3115, Mismatches: 748, Indels: 483
0.72 0.17 0.11
Matches are distributed among these distances:
159 24 0.01
160 55 0.02
161 18 0.01
162 16 0.01
163 59 0.02
164 67 0.02
165 27 0.01
166 3 0.00
167 23 0.01
168 44 0.01
169 274 0.09
170 986 0.32
171 1014 0.33
172 308 0.10
173 71 0.02
174 2 0.00
175 1 0.00
178 62 0.02
179 13 0.00
180 34 0.01
181 11 0.00
182 3 0.00
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (169 bp):
ACAAGAAAAGTCCATTTATAGTCACTTATACATTCGAAGGCCTAGTTACTCACGTTAAATAGTTT
TATAATCTTATAAATGAATTTAAATTGATTTTTTTTCATTTTTGGTTAAAACAAACCTTAATTAG
ATGTTTCATAAGGAAACGTGAAGCAAAAGCCATCCATTA
Found at i:233365 original size:171 final size:170
Alignment explanation
Indices: 231665--236630 Score: 1866
Period size: 170 Copynumber: 29.2 Consensus size: 170
231655 AGGGCGCTAC
** ** * * * **
231665 AAACATGAAGCAAAAATCATCTGTTGACAAGAAAAGTCTATTTATAGTCATTAATTCCTTCGAAA
1 AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTTAAAA
* * * * * *
231730 GCCTAGTTAGTCA-CTTTAAATAGGTTTTATAA-TCTTATAAATAATTTTAAAATTGAATTTTTC
66 GCCTTGTTA-CCAGTTTTAAGT-GATTTTATAACT-TTATAAATGATTTT-AAATTGAATTTTT-
* * * *
231793 T-CATTTTTGGTTAAAACAAATTC-TAATTTGATGTTTGCAT--GG
126 TATATTTTTAGTTAAAACAGA-TCATAATTTGATGTTTACATCAGG
* * * *
231835 CCAAACATGAAGCAAAAGCTATCCATTAACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAA
1 --AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTTAA
* * * * ** *
231900 AAGTCATT-TTACTCA-CTTTAAATGGACTTT-TAACTTTATAAATGATTTT-TGTCTGAACTAT
64 AAG-CCTTGTTAC-CAGTTTTAAGT-GATTTTATAACTTTATAAATGATTTTAAAT-TGAA-TTT
* * * *
231961 TTTACATTTTT--TTAAAAATAGATCAGAATTTGAT-TCTTACATCAAG
124 TTTATATTTTTAGTT-AAAACAGATCATAATTTGATGT-TTACATCAGG
* * * * * * *
232007 AAACATGAAGCGAAAGCCATTCATTAACAAGAAAAGTCCATTTATAGTCACTTATGCCTTTGAAG
1 AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTTAAAA
* ** * * * * * * *
232072 GCATAT-TTACTTGTTTCAA-AGAGTTTCATAA-TCTTGTAAATAATTTCAAATTGAATTTTTTT
66 GCCT-TGTTACCAGTTTTAAGTGA-TTTTATAACT-TTATAAATGATTTTAAATTGAATTTTTTA
* * * * * *
232134 TCCTTTTTGGTTAAAA-A-AGCATAATTTGTTGTTTGCATAAGG
128 T-ATTTTTAGTTAAAACAGATCATAATTTGATGTTTACATCAGG
* * * * * * * * * ** *
232176 AAACGTGAAGTAAAAGTCATCCATTGATAAGAAAAGTCTATTTATAATGACTTATACATTCGAAG
1 AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTTAAAA
* * *
232241 GCCTAGTTACTCACG--TTAAAT-AGTTTTATAA-TCTTATAAATGAGTTTAAATTG-ATTTTTT
66 GCCTTGTTAC-CA-GTTTTAAGTGA-TTTTATAACT-TTATAAATGATTTTAAATTGAATTTTTT
* * * * * ** *
232301 TTCATTTTTGGTTAAAACAAACCTTAATTAAATGTTT-CAATTAGG
127 AT-ATTTTTAGTTAAAACAGATCATAATTTGATGTTTAC-ATCAGG
** * * * * * *
232346 AAATGTGAAGCAAAAGGCATCCATTAACAAGAAAAGTCTATTTATAGTCATTCATACATTTCAAA
1 AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTTAAAA
* * * * * * * **
232411 GCCTAGTTATTCACTTTCAA-TGGTTTTATAA-TCTAATAAATGACTTTAAAGTAAAATTATTTT
66 GCCTTGTTA-CCAGTTTTAAGTGATTTTATAACT-TTATAAATGATTTTAAA-TTGAATT-TTTT
* * * * ** *
232474 CATA--TCTAG-TAAGAACAAATCTTAATTGGATGTTTGTATCAAG
127 -ATATTTTTAGTTAA-AACAGATCATAATTTGATGTTTACATCAGG
* * * * * **
232517 AAACATGAAGCGAAAGCCATCCATTAACAAGAAAAGTCCATTTATAGTTA-TATATGCCTTCGAA
1 AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACT-CATGCCTTTAAA
* * * * * *
232581 AG---TCTTACAAGTCACTTTCAGTGATTTTGTAACTTTATAAATTATTTTAAATTG-TTTTTTT
65 AGCCTTGTTACCAGT---TTTAAGTGATTTTATAACTTTATAAATGATTTTAAATTGAATTTTTT
* * ** **
232642 TTCATTTTTAGTTAAAACATATCATAATTTGACATTTGGATCAGG
127 AT-ATTTTTAGTTAAAACAGATCATAATTTGATGTTTACATCAGG
*** * * * * * * * * * *
232687 AAA-AGTGAAGTGCAGGACATTCATTGACAAGAAAAATTTATTTGTTGTCACTCAAGCCTTCGAC
1 AAACA-TGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTT-TAA
** ** * * *
232751 AA-CCCAG-TACCTCTTTTCAAGT-AGTTTTATAA-TCCTATTAATGATTTTAAATCGAAATGTT
64 AAGCCTTGTTACCAGTTTT-AAGTGA-TTTTATAACT-TTATAAATGATTTTAAATTG-AAT-TT
* * * * *
232812 TTT-TATTTTAATTTAAAA-AGAT-ATTTTAATTGGATGTTTGCATCAAG
124 TTTATATTTTTAGTTAAAACAGATCA---TAATTTGATGTTTACATCAGG
** * * * * * * * *
232859 AAACATGAAGGGAAAGCCTTCCA-TGTACAAGAAAAAT-TCATATCTACTTAATCATGCCTTCAA
1 AAACATGAAGCAAAAGCCATCCATTG-ACAAGAAAAGTCT-ATTTATAGTCACTCATGCCTTTAA
* ** * *
232922 AAGCCTTGTTA-CACGCTTTAAAAGGTTTTATAACTTTATAAATGATTTTAAATTGAATTCCATT
64 AAGCCTTGTTACCA-GTTTTAAGTGATTTTATAACTTTATAAATGATTTTAAATTGAATT--TTT
* * ***
232986 T-TATTTTTAGTTAAAATAGATCATATAATTTGTTGTTTGGGT-AGAG
126 TATATTTTTAGTTAAAACAGATC--ATAATTTGATGTTTACATCAG-G
** * * * * *
233032 AAACATGAAGTGAAAGACATCCATTGAGAAGAAAAGTCTATCTATAGTCACTCATG--TCT-CAA
1 AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTTAAAA
* * ** * * * *
233094 GTCCATT-TATAGTCATCGATGCATTCAAACGACTAGTTAGTCAC-TT-CAAATGATTTTAAAAA
66 G-CC-TTGT-TA--C--C-A-G-TTTTAAGTGA-T-TTTA-TAACTTTATAAATGATTTT-AAAT
* *
233156 TGAATTATTCTA-ATTTTTAGTTAAAACAGATCATAATTTGCTGTTTACATCAGG
117 TGAATT-TTTTATATTTTTAGTTAAAACAGATCATAATTTGATGTTTACATCAGG
* * * * * * * **
233210 AAACGTGAAGCAAAAGCTATCCATTGATAAGTAAAGTCCATATATAGTCACTCGTGCCTTCGAAA
1 AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTTAAAA
* * * *
233275 GCCTTGTTACAAGTTTTAAGTGGA-TTCATAACTTTATAAATGATTTTAGATTGAATTATTTTGT
66 GCCTTGTTACCAGTTTTAAGT-GATTTTATAACTTTATAAATGATTTTAAATTGAATT-TTTTAT
** ** **
233339 ATTTTTAGTTAAAGTAGA-CTATAATTTGATGTTTGTA-GGGG
129 ATTTTTAGTTAAAACAGATC-ATAATTTGATGTTTACATCAGG
* * * * * * * *
233380 ACACATAAAGCGAAAGCCATCCATTGACAAGAAAGGTCCATTTATAGTTACTTATGCCTTTTAAA
1 AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTTAAAA
* * ** * * *
233445 GTCTTATTACTTGCTTAAAGTGATTTTATAACTTTATAAATAATTTTAAATTGAATTTGTTTATA
66 GCCTTGTTACCAGTTTTAAGTGATTTTATAACTTTATAAATGATTTTAAATTGAATTT-TTTATA
* *
233510 TTTTTAGTTAAAACAGATCATAATTTGATGTTTGCAT-TGAG
130 TTTTTAGTTAAAACAGATCATAATTTGATGTTTACATCAG-G
* * * *
233551 AAACATGAAGCCAAAGCCATCCATTGACAAGAAAAGTCTATTTGTAGTCACTTATACCTTTAAAA
1 AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTTAAAA
* * * **
233616 GCCTAT-TTACTCA-CTTCAAATGATTTTATAA-TCTTATAAATGATTGCAAATTG-ATTGTTTT
66 GCCT-TGTTAC-CAGTTTTAAGTGATTTTATAACT-TTATAAATGATTTTAAATTGAATT-TTTT
* * * * *
233677 TTCATTTTT-GATTAACAA-AGATTATAGTTTGCTGTTTACATTAGG
127 AT-ATTTTTAG-TTAA-AACAGATCATAATTTGATGTTTACATCAGG
* ** * *
233722 AAACGTGAAGCGAAAA-CCATCCATTGGTAACAAAAGTCTA-TTATAGTCACTCATACCTTTAAA
1 AAACATGAAGC-AAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTTAAA
* ** * * * *
233785 AGCCTTGCTACTTGTTTTAAGTGGA-TTTCTAACTTT-TTAA--A--TTGAATTG--TTTTTTAC
65 AGCCTTGTTACCAGTTTTAAGT-GATTTTATAACTTTATAAATGATTTTAAATTGAATTTTTTAT
* * * *
233842 GTTTTTCGTTAAAATAGATCAT-ATTTGATGTTTGA-ATCAAG
129 ATTTTTAGTTAAAACAGATCATAATTTGATGTTT-ACATCAGG
* *
233883 AAAC-TGAAGCAAAA-CCATCCATTTACAATAAAAGTCTATTTATAGTCACTCATGCCTTTAAAA
1 AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTTAAAA
* * * *
233946 GCCTTGTTACTCA-TTTTAAATAGA-TTTATAACTTTTTAAATTATTTTAAATT-AATTTTTTTT
66 GCCTTGTTAC-CAGTTTTAAGT-GATTTTATAACTTTATAAATGATTTTAAATTGAATTTTTTAT
* * * * *
234008 ACATTTTAGTTAAAACATATCATAATTTAATGTTTGCATCAAG
129 A-TTTTTAGTTAAAACAGATCATAATTTGATGTTTACATCAGG
* * * * * * ** *
234051 AATCATGAAGTGAAAAG-CATCCATTGGCAAAAAAAGTCCATTTATAATGGCTCATGCCTTCAAA
1 AAACATGAAG-CAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTT-TAA
* * * * * *
234115 AAGCCTAT-TTACTC-GCTTTAAAT-AGTTTTATTA-TCTTAAAAATGATTTCAAATTGATTTTT
64 AAGCCT-TGTTAC-CAGTTTTAAGTGA-TTTTATAACT-TTATAAATGATTTTAAATTGAATTTT
* * * * * * * * *
234176 TTTTAATTTTTGGTTAAAATAGATAATAATTTGTTATTTGCATTAAG
125 TTAT-ATTTTTAGTTAAAACAGATCATAATTTGATGTTTACATCAGG
* * * * * ** * *
234223 AAACATGAAGCGAAAA-CCATCCATTGAGAAGAAGACTCCATTTATAGCCACAAATGTCTTCAAA
1 AAACATGAAGC-AAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTTAAA
** * *
234287 AGCCTAATTAGTCA-TTTTAAAT-AGTTTTATAA-TCTTATAAATGATTTTAAAATTGAAGTTTT
65 AGCCTTGTTA-CCAGTTTTAAGTGA-TTTTATAACT-TTATAAATGATTTT-AAATTGAA-TTTT
* * * * *
234349 CTCAT-TTTTT-CTTAACACGGATCATAATTTGATGTTTGCATC-GG
125 -TTATATTTTTAGTTAAAACAGATCATAATTTGATGTTTACATCAGG
* * *
234393 AAAACATGAAGCAAAAGCCATCTATTGACAAGAAAAG-CTCATTTATAGTTAC-CGATGCCTTCA
1 -AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCT-ATTTATAGTCACTC-ATGCCTTTA
* * * * * *
234456 AAAACCTAT-TTAGTCA-TTTTAAATGGTTTTATAA-TCTTAGAAATAATTTTAAAATTGAATTT
63 AAAGCCT-TGTTA-CCAGTTTTAAGTGATTTTATAACT-TTATAAATGATTTT-AAATTGAATTT
* * ** * * *
234518 TCT-TATTTTTGGTTAACGCAAATTATAATTTGATGTTTACAT-GGG
124 TTTATATTTTTAGTTAAAACAGATCATAATTTGATGTTTACATCAGG
** ** * * * * * * **
234563 AAA-ATGTGAAGTTAAAGTGATCCATTGACAA-AGAAAGCCCATTTATAGTCTCTTATGTCATCG
1 AAACA--TGAAGCAAAAGCCATCCATTGACAAGA-AAAGTCTATTTATAGTCACTCATGCCTTTA
* * * * ** * *
234626 AAAGTCTAG-TAGGTCA-CTTTAAACGATTTTATAA-TCCTATGAATGATTTTAAAATTGAATTA
63 AAAGCCTTGTTA--CCAGTTTTAAGTGATTTTATAACT-TTATAAATGATTTT-AAATTGAATT-
* * *
234688 TTCTTAT-TTTTTA-TTAAAACAGATCATAATTTGATGTTAACTTCAAG
123 TT-TTATATTTTTAGTTAAAACAGATCATAATTTGATGTTTACATCAGG
* * * * * * * *
234735 AAACGCT-AAGTAAAAGCCATCCACTAAAAAGAAAAGTCTATTTATGGTCACTTATGCCTTCAAA
1 AAAC-ATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTTAAA
** * * * * *
234799 AG-CTATGTTACTTGATTTAAGTGGA-TTAATAACATTATAAATGATTTTAGATTGAATTATTTG
65 AGCCT-TGTTACCAGTTTTAAGT-GATTTTATAACTTTATAAATGATTTTAAATTGAATT-TTTT
* * *
234862 ATATTTTTAGTTAAAATAAATCATAATTTGATATTTACAT-AGGG
127 ATATTTTTAGTTAAAACAGATCATAATTTGATGTTTACATCA-GG
** * * *
234906 AAATGTGAAGCGAAAGCCATCCATTGACAA-AAAATGTCCATTTATAGTCACTTA-G------AA
1 AAACATGAAGCAAAAGCCATCCATTGACAAGAAAA-GTCTATTTATAGTCACTCATGCCTTTAAA
* * * * *
234963 AGCCTTGTTACTCA-CTTTAAGTGGA-TTTATAACTTTTTAAAT-ACTTTTTAACTAAATTTTTT
65 AGCCTTGTTAC-CAGTTTTAAGT-GATTTTATAACTTTATAAATGA-TTTTAAATTGAATTTTTT
* * * * **
235025 ATATTTTTGGTTAAAACTGATCGTAATTTGATGTTTACATTAAA
127 ATATTTTTAGTTAAAACAGATCATAATTTGATGTTTACATCAGG
** * * * * *
235069 AAATGTGAAGCGAAAGCCATTCCTTTAACAAGAAAAGTGC-ATTTATAGTCACTCCTGCCTTAAA
1 AAACATGAAGCAAAAGCCA-TCCATTGACAAGAAAAGT-CTATTTATAGTCACTCATGCCTTTAA
* * * * * *
235133 AAGCCTAT-TTACTTA-CTTCAAATGATTTTGTAA-TCTTATAAAAGATTTTAAATTGAATTTTT
64 AAGCCT-TGTTAC-CAGTTTTAAGTGATTTTATAACT-TTATAAATGATTTTAAATTGAATTTTT
* * * ** * *
235195 T-TCATTTCTAGTTAAAACATATCAAAATTTCTTGTTTGCATTAGG
126 TAT-ATTTTTAGTTAAAACAGATCATAATTTGATGTTTACATCAGG
*** * * * * * * **
235240 AAAGGCGAAGCGAAAA-TCATCCACTGATAAGAAAAGTCCATTTATAGTGACTAATGCCTTCGAA
1 AAACATGAAGC-AAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTTAAA
* *** * * * * * *
235304 AGCCTAGTTAGTTGCTTTAAATGGTTTTAGAA-TAGTATAGAA-GATTTTAAAATTGAATTTTGC
65 AGCCTTGTTACCAGTTTTAAGTGATTTTATAACT-TTATA-AATGATTTT-AAATTGAATTTT-T
* * * * * *
235367 T-CATTTTTGGTTAAAACAAATCATAATTTGATATTTACGT-TGG
126 TATATTTTTAGTTAAAACAGATCATAATTTGATGTTTACATCAGG
* * * * * *
235410 CAAACATAAAGCAAAAGCCATGCATTGATAAGAAAACTCTATTTATAGTCACTCATGCCTTCATA
1 -AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTTAAA
* ** ** * * * *
235475 GGCCTTGCCACTTGCTTTAAGTGGA-TTTATAAGTTTTTAAATAATTTTAAA-TGAAATTGTTTT
65 AGCCTTGTTACCAGTTTTAAGT-GATTTTATAACTTTATAAATGATTTTAAATTG-AATT-TTTT
* * ** * * * * *
235538 ATACTTTTGGTTAAAGTAAATCATAATTTGATATTTGCTTTAGG
127 ATATTTTTAGTTAAAACAGATCATAATTTGATGTTTACATCAGG
* ** * * ** * *
235582 AAA-AAGAAGCGTAAGCCATCCATTGATAAGAAAAAATC-ATTTATAGTTGCTTATGCCTTCAAA
1 AAACATGAAGCAAAAGCCATCCATTGACAAG-AAAAGTCTATTTATAGTCACTCATGCCTTTAAA
* * * * *
235645 AGCCTAT-TTACTC-GCTTCAAAT-AGTTTTATAA-TCTTATAAATGATTTAAAATTAAATATTT
65 AGCCT-TGTTAC-CAGTTTTAAGTGA-TTTTATAACT-TTATAAATGATTTTAAATTGAAT-TTT
* * * *
235706 TT-TATTTTTTGATTAAAACAAATCATAATTTGTTGTTTTCAT-AGG
125 TTATATTTTTAG-TTAAAACAGATCATAATTTGATGTTTACATCAGG
* * * * * * * **
235751 AAACAT-AGAGCATAAA-TCTTCCACTAACAAGAAAAGTCCA-TTATAGTCACTTATGTCTTCGA
1 AAACATGA-AGCA-AAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTTAA
* * * * *
235813 AAGCCTAGTTAATCA-CTTTATA-T-AGTTTTGTAA-TCTTATAAATGATTTTAAAATTGAATGT
64 AAGCCTTGTT-ACCAGTTTTA-AGTGA-TTTTATAACT-TTATAAATGATTTT-AAATTGAATTT
* * * *
235874 TTCATATTTTTGGTTAAAATAGATCATAATTTGATGTTTACATTAGG
124 TTTATATTTTTAGTTAAAACAGATCATAATTTGATGTTTACATCAGG
* ** * ** * * * *
235921 AAACATCAAGTGAAAGACATCCATTGTTAAGAAAAGT-TCATTTATATTTATTCAAT-CCTTCAA
1 AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCT-ATTTATAGTCACTC-ATGCCTTTAA
*** * * * * * * *
235984 AAGCCTTGTTATTTGCTTTAAGTGGA-TTCACAACTTCATAAATAATTTTAAAATAAATTTTTTT
64 AAGCCTTGTTACCAGTTTTAAGT-GATTTTATAACTTTATAAATGATTTTAAATTGAA-TTTTTT
* * * * *
236048 ACATTTTTTGTT-AAACAGATCAAAATTTGATGTTTCCATCAAG
127 ATATTTTTAGTTAAAACAGATCATAATTTGATGTTTACATCAGG
* ** * * * * * *
236091 AAACGTGAAGTGAAAGCCATCTATTGACAAGAAAAGTCTATTTAGACTCCCTCATTCCTTCAAAA
1 AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTTAAAA
* * * * * * * ** *
236156 GCCTAT-TTGCTCA-CTTCAAATGGTTTTATAA-TCTTATAAATAATTTCAAATTGAATAGTTTC
66 GCCT-TGTTAC-CAGTTTTAAGTGATTTTATAACT-TTATAAATGATTTTAAATTGAATTTTTTA
* * * * **
236218 TCATTTTTAGTTAAAACATATCAAAATTT-ATTATTTGCATTGGG
128 T-ATTTTTAGTTAAAACAGATCATAATTTGA-TGTTTACATCAGG
* * * * * * * * **
236262 AAAGATAAAGTGAAAA-TCATCTATTGATAAGAAAAGTCCATTTATAGTCACT-AGTACCTTCGA
1 AAACATGAAG-CAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCA-TGCCTTTAA
* * * * ** * *
236325 AAGCCTAGTTAGTCACTTTTAATTG-TTTTATAAGC-TTATACCTTATTCTAAAATTGAATTTTT
64 AAGCCTTGTTA-CCAGTTTTAAGTGATTTTATAA-CTTTATAAATGATT-TTAAATTGAATTTTT
** * * ** *
236388 T-T-GCTTTGGATTAAAACAGATCATAATTTGATATTTGTAT-TGAG
126 TATATTTTTAG-TTAAAACAGATCATAATTTGATGTTTACATCAG-G
*** * * * * *
236432 AAACATGAAATGAAAGCCATCCATTGATAAGAAAAGTCCAATTATAATTGCA-T-ATGCCTTCAA
1 AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTAT-AGT-CACTCATGCCTTTAA
* ** * * * * * *
236495 AAG-CTTATTTACTTGATTCAAATGGTTTTATAA-TCATACAAATGATTTTAAATTGATCAATTT
64 AAGCCTT-GTTACCAGTTTTAAGTGATTTTATAACT-TTATAAATGATTTTAAATTG---AATTT
* * * * * *
236558 TTT-CATTTTTGGTTCAAACAGATCA-AAATTGTTTGTTTGCATCAGG
124 TTTATATTTTTAGTTAAAACAGATCATAATTTG-ATGTTTACATCAGG
* **
236604 AAGCATGAAGCAAAAATCATCCATTGA
1 AAACATGAAGCAAAAGCCATCCATTGA
236631 TAAATGTACT
Statistics
Matches: 3662, Mismatches: 843, Indels: 578
0.72 0.17 0.11
Matches are distributed among these distances:
159 24 0.01
160 57 0.02
161 22 0.01
162 16 0.00
163 63 0.02
164 71 0.02
165 19 0.01
166 6 0.00
167 21 0.01
168 55 0.02
169 308 0.08
170 1201 0.33
171 1159 0.32
172 405 0.11
173 94 0.03
174 7 0.00
176 1 0.00
177 2 0.00
178 63 0.02
179 12 0.00
180 36 0.01
181 17 0.00
182 3 0.00
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (170 bp):
AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTTAAAA
GCCTTGTTACCAGTTTTAAGTGATTTTATAACTTTATAAATGATTTTAAATTGAATTTTTTATAT
TTTTAGTTAAAACAGATCATAATTTGATGTTTACATCAGG
Found at i:233655 original size:341 final size:338
Alignment explanation
Indices: 231665--236630 Score: 2137
Period size: 341 Copynumber: 14.6 Consensus size: 338
231655 AGGGCGCTAC
* ** ** * * * * **
231665 AAACATGAAGCAAAAATCATCTGTTGACAAGAAAAGTCTATTTATAGTCATTAATTCCTTCGAAA
1 AAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAAAA
* * ** *
231730 GCCTAGTTAGTCACTTTAAA-TAGGTTTTATAATCTTATAAATAATTTTAAAATTGAATTTTTCT
66 GCTTA-TTACTTGC-TTAAAGT-GATTTTATAAT-TTATAAATAATTTT-AAATTGAATTTTT-T
* * * * ** * *
231794 -CATTTTTGGTTAAAACAAATTC-TAATTTGATGTTTGCATGGCCAAACATGAAGCAAAAGCTAT
125 ATATTTTTAGTTAAAACAGA-TCATAATTTGATGTTTGCATTGAGAAACATGAAGCGAAAGCCAT
* * *
231857 CCATTAACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGTC-ATTTTACTCACTTTAA
189 CCATTGACAAGAAAAGTCCATTTATAGTCACTTATGCCTTCAAAAGCCTA-TTTACTCACTTTAA
* ** * ** *
231921 ATGGACTTT-TAA-CTTTATAAATGATTTT-TGTCTGAACTATTTTACATTTTT--TTAAAAATA
253 AT-GATTTTATAATC-TTATAAATGATTTTAAAT-TGAATTATTTTTTATTTTTAGTT-AAAACA
* * *
231981 GATCAGAATTTGAT-TCTTACATC-AA
314 GATCATAATTTGATGT-TTGCA-CGGA
* * * *
232006 GAAACATGAAGCGAAAGCCATTCATTAACAAGAAAAGTCCATTTATAGTCACTTATGCCTTTGAA
1 -AAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAAA
* * * * * * * *
232071 GGCATATTTACTTGTTTCAAAGAG-TTTCATAATCTTGTAAATAATTTCAAATTGAATTTTTTTT
65 AGCTTA-TTACTTGCTT-AAAGTGATTTTATAAT-TTATAAATAATTTTAAATTGAATTTTTTAT
* * * * * * ** *
232135 CCTTTTTGGTTAAAA-A-AGCATAATTTGTTGTTTGCA-TAAGGAAACGTGAAGTAAAAGTCATC
127 -ATTTTTAGTTAAAACAGATCATAATTTGATGTTTGCATTGA-GAAACATGAAGCGAAAGCCATC
* * * * * * * * * *
232197 CATTGATAAGAAAAGTCTATTTATAATGACTTATACATTCGAAGGCCTAGTTACTCACGTTAAAT
190 CATTGACAAGAAAAGTCCATTTATAGTCACTTATGCCTTCAAAAGCCTATTTACTCACTTTAAAT
* * * *
232262 -AGTTTTATAATCTTATAAATGAGTTTAAATTG-ATT-TTTTTTCATTTTTGGTTAAAACAAACC
255 GA-TTTTATAATCTTATAAATGATTTTAAATTGAATTATTTTTT-ATTTTTAGTTAAAACAGATC
* ** *
232324 TTAATTAAATGTTT-CAATTAGG-
318 ATAATTTGATGTTTGC-A--CGGA
** * * * * * * * *
232346 AAATGTGAAGCAAAAGGCATCCATTAACAAGAAAAGTCTATTTATAGTCATTCATACATTTCAAA
1 AAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAAAA
* * * * * * * **
232411 GCCTAGTTA-TTCACTTTCAA-TGGTTTTATAATCTAATAAATGACTTTAAAGTAAAATTATTTT
66 GCTTA-TTACTT-GC-TTAAAGTGATTTTATAAT-TTATAAATAATTTTAAA-TTGAATT-TTTT
* * * * * **
232474 CATA--TCTAG-TAAGAACAAATCTTAATTGGATGTTTGTATCAAGAAACATGAAGCGAAAGCCA
125 -ATATTTTTAGTTAA-AACAGATCATAATTTGATGTTTGCATTGAGAAACATGAAGCGAAAGCCA
* * * * ** *
232536 TCCATTAACAAGAAAAGTCCATTTATAGTTA-TATATGCCTTCGAAAGTCT-TACAAGTCACTTT
188 TCCATTGACAAGAAAAGTCCATTTATAGTCACT-TATGCCTTCAAAAGCCTAT-TTACTCACTTT
* * * * *
232599 CAGTGATTTTGTAA-CTTTATAAATTATTTTAAATTG--TTTTTTTTTCATTTTTAGTTAAAACA
251 AAATGATTTTATAATC-TTATAAATGATTTTAAATTGAATTATTTTTT-ATTTTTAGTTAAAACA
* ** *
232661 TATCATAATTTGACATTTGGATCAGGA
314 GATCATAATTTGATGTTTGCA-C-GGA
* * * * * * * ** * * * * *
232688 AAA-GTGAAGTGCAGGACATTCATTGACAAGAAAAATTTATTTGTTGTCACTCAAGCCTTCGACA
1 AAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT-TAAA
** * * * * * * *
232752 A-CCCAGTACCTCT-TTTCAAGT-AGTTTTATAATCCTATTAATGATTTTAAATCGAAATGTTTT
65 AGCTTATTA-CT-TGCTTAAAGTGA-TTTTATAAT-TTATAAATAATTTTAAATTG-AAT-TTTT
* * * ** *
232814 T-TATTTTAATTTAAAA-AGAT-ATTTTAATTGGATGTTTGCATCAAGAAACATGAAGGGAAAGC
124 TATATTTTTAGTTAAAACAGATCA---TAATTTGATGTTTGCATTGAGAAACATGAAGCGAAAGC
* * * * * * * * * * *
232876 CTTCCA-TGTACAAGAAAAATTCATATCTACTTAATCATGCCTTCAAAAGCCT-TGTTACACGCT
186 CATCCATTG-ACAAGAAAAGTCCATTTATAGTCACTTATGCCTTCAAAAGCCTAT-TTACTCACT
* * *** *
232939 TTAAAAGGTTTTATAA-CTTTATAAATGATTTTAAATTGAATTCCATTTTATTTTTAGTTAAAAT
249 TTAAATGATTTTATAATC-TTATAAATGATTTTAAATTGAATTATTTTTTATTTTTAGTTAAAAC
* ****
233003 AGATCATATAATTTGTTGTTTGGGTAGA
313 AGATC--ATAATTTGATGTTTGCACGGA
* * * * * * * *
233031 GAAACATGAAGTGAAAGACATCCATTGAGAAGAAAAGTCTATCTATAGTCACTCATGTC-TCAAG
1 -AAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAAA
** * * * * * * * *
233095 TCCATTTATAGTCATCGATGCATTCAAA-CGACTAGTTAGTCACTT-CAAATGATTTTAAAAATG
65 AGC--TTAT--T-A-C-TTGC-TT-AAAGTGA-T-TTTA-TAATTTATAAATAATTTT-AAATTG
* * * * *
233158 AATTATTCTA-ATTTTTAGTTAAAACAGATCATAATTTGCTGTTTACA-TCAGGAAACGTGAAGC
117 AATT-TTTTATATTTTTAGTTAAAACAGATCATAATTTGATGTTTGCATTGA-GAAACATGAAGC
* * * * * ** *
233221 AAAAGCTATCCATTGATAAGTAAAGTCCATATATAGTCACTCGTGCCTTCGAAAGCCT-TGTTAC
180 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTTATGCCTTCAAAAGCCTAT-TTAC
* * * * * *
233285 -AAGTTTTAAGTGGA-TTCATAA-CTTTATAAATGATTTTAGATTGAATTATTTTGTATTTTTAG
244 TCA-CTTTAAAT-GATTTTATAATC-TTATAAATGATTTTAAATTGAATTATTTTTTATTTTTAG
** * * *
233347 TTAAAGTAGA-CTATAATTTGATGTTTGTAGGGG
306 TTAAAACAGATC-ATAATTTGATGTTTGCACGGA
* * * * * *
233380 ACACATAAAGCGAAAGCCATCCATTGACAAGAAAGGTCCATTTATAGTTACTTATGCCTTTTAAA
1 AAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAAAA
233445 GTCTTATTACTTGCTTAAAGTGATTTTATAACTTTATAAATAATTTTAAATTGAATTTGTTTATA
66 G-CTTATTACTTGCTTAAAGTGATTTTATAA-TTTATAAATAATTTTAAATTGAATTT-TTTATA
*
233510 TTTTTAGTTAAAACAGATCATAATTTGATGTTTGCATTGAGAAACATGAAGCCAAAGCCATCCAT
128 TTTTTAGTTAAAACAGATCATAATTTGATGTTTGCATTGAGAAACATGAAGCGAAAGCCATCCAT
* * * * *
233575 TGACAAGAAAAGTCTATTTGTAGTCACTTATACCTTTAAAAGCCTATTTACTCACTTCAAATGAT
193 TGACAAGAAAAGTCCATTTATAGTCACTTATGCCTTCAAAAGCCTATTTACTCACTTTAAATGAT
** * *
233640 TTTATAATCTTATAAATGATTGCAAATTG-ATTGTTTTTTCATTTTT-GATTAACAA-AGATTAT
258 TTTATAATCTTATAAATGATTTTAAATTGAATTATTTTTT-ATTTTTAG-TTAA-AACAGATCAT
* * * *
233702 AGTTTGCTGTTTACATTAGG-
320 AATTTGATGTTTGCA--CGGA
* * ** * * *
233722 AAACGTGAAGCGAAAACCATCCATTGGTAACAAAAGTCTA-TTATAGTCACTCATACCTTTAAAA
1 AAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAAAA
** * * * * * **
233786 GCCTTGCTACTTGTTTTAAGTGGATTTCTA-ACTTT-T---TAA-ATTGAATTG--TTTTTTACG
66 G-CTTATTACTTGCTTAAAGT-GATTT-TATAATTTATAAATAATTTTAAATTGAATTTTTTATA
* * * ** *
233843 TTTTTCGTTAAAATAGATCAT-ATTTGATGTTTGAATCAAGAAAC-TGAAGC-AAAACCATCCAT
128 TTTTTAGTTAAAACAGATCATAATTTGATGTTTGCATTGAGAAACATGAAGCGAAAGCCATCCAT
* * * * * *
233905 TTACAATAAAAGTCTATTTATAGTCACTCATGCCTTTAAAAGCCT-TGTTACTCATTTTAAATAG
193 TGACAAGAAAAGTCCATTTATAGTCACTTATGCCTTCAAAAGCCTAT-TTACTCACTTTAAAT-G
* * * *
233969 A-TTTATAA-CTTTTTAAATTATTTTAAATT-AATT-TTTTTTACATTTTAGTTAAAACATATCA
256 ATTTTATAATC-TTATAAATGATTTTAAATTGAATTATTTTTTA-TTTTTAGTTAAAACAGATCA
*
234030 TAATTTAATGTTTGCATC--A
319 TAATTTGATGTTTGCA-CGGA
* * * * ** *
234049 AGAATCATGAAGTGAAAAG-CATCCATTGGCAAAAAAAGTCCATTTATAATGGCTCATGCCTTCA
1 A-AA-CATGAAGCG-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT-T
* * * * * * *
234113 AAAAGCCTATTTACTCGCTTTAAA-T-AGTTTTATTATCTTAAAAATGATTTCAAATTGATTTTT
62 AAAAGCTTA-TTACTTGC-TTAAAGTGA-TTTTATAAT-TTATAAATAATTTTAAATTGAATTTT
* * * * * * * *
234176 TTTTAATTTTTGGTTAAAATAGATAATAATTTGTTATTTGCATTAAGAAACATGAAGCGAAAACC
123 TTAT-ATTTTTAGTTAAAACAGATCATAATTTGATGTTTGCATTGAGAAACATGAAGCGAAAGCC
* * * * ** * * * *
234241 ATCCATTGAGAAGAAGACTCCATTTATAGCCACAAATGTCTTCAAAAGCCTAATTAGTCATTTTA
187 ATCCATTGACAAGAAAAGTCCATTTATAGTCACTTATGCCTTCAAAAGCCTATTTACTCACTTTA
* * * ** * *
234306 AAT-AGTTTTATAATCTTATAAATGATTTTAAAATTGAAGT-TTTCTCATTTTTTCTTAACACGG
252 AATGA-TTTTATAATCTTATAAATGATTTT-AAATTGAATTATTTTTTATTTTTAGTTAAAACAG
234369 ATCATAATTTGATGTTTGCATCGGA
315 ATCATAATTTGATGTTTGCA-CGGA
* * * *
234394 AAACATGAAGCAAAAGCCATCTATTGACAAGAAAAG-CTCATTTATAGTTAC-CGATGCCTTCAA
1 AAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTC-CATTTATAGTCACTC-ATGCCTTTAA
* * * *
234457 AAACCTATTTAGTCATT--TTAAA-TGGTTTTATAATCTTAGAAATAATTTTAAAATTGAATTTT
64 AAGCTTA-TTA--C-TTGCTTAAAGTGATTTTATAAT-TTATAAATAATTTT-AAATTGAATTTT
* * ** * * * * ** *
234519 CT-TATTTTTGGTTAACGCAAATTATAATTTGATGTTTACA-TGGGAAA-ATGTGAAGTTAAAGT
123 TTATATTTTTAGTTAAAACAGATCATAATTTGATGTTTGCATTGAGAAACA--TGAAGCGAAAGC
* * * * * * * * *
234581 GATCCATTGACAA-AGAAAGCCCATTTATAGTCTCTTATGTCATCGAAAGTCTA-GTAGGTCACT
186 CATCCATTGACAAGA-AAAGTCCATTTATAGTCACTTATGCCTTCAAAAGCCTATTTA-CTCACT
* * * *
234644 TTAAACGATTTTATAATCCTATGAATGATTTTAAAATTGAATTA-TTCTTATTTTTTA-TTAAAA
249 TTAAATGATTTTATAATCTTATAAATGATTTT-AAATTGAATTATTTTTTA-TTTTTAGTTAAAA
* *
234707 CAGATCATAATTTGATGTTAACTTCA-AG-
312 CAGATCATAATTTGATGTT---TGCACGGA
* ** * * * * * * *
234735 AAACGCT-AAGTAAAAGCCATCCACTAAAAAGAAAAGTCTATTTATGGTCACTTATGCCTTCAAA
1 AAAC-ATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAAA
* * * * * * * *
234799 AGCTATGTTACTTGATTTAAGTGGA-TTAATAACATTATAAATGATTTTAGATTGAATTATTTGA
65 AGCT-TATTACTTGCTTAAAGT-GATTTTATAA-TTTATAAATAATTTTAAATTGAATT-TTTTA
* * * * * * **
234863 TATTTTTAGTTAAAATAAATCATAATTTGATATTTACATAGGGAAATGTGAAGCGAAAGCCATCC
126 TATTTTTAGTTAAAACAGATCATAATTTGATGTTTGCATTGAGAAACATGAAGCGAAAGCCATCC
*
234928 ATTGACAA-AAAATGTCCATTTATAGTCACTTA-G------AAAGCCT-TGTTACTCACTTTAAG
191 ATTGACAAGAAAA-GTCCATTTATAGTCACTTATGCCTTCAAAAGCCTAT-TTACTCACTTTAAA
* * * * * * *
234984 TGGA-TTTATAA-CTTTTTAAAT-ACTTTTTAACTAAATT-TTTTATATTTTTGGTTAAAACTGA
254 T-GATTTTATAATC-TTATAAATGA-TTTTAAATTGAATTATTTTTTATTTTTAGTTAAAACAGA
* * **
235045 TCGTAATTTGATGTTTACA-TTA
316 TCATAATTTGATGTTTGCACGGA
* * * * * *
235067 AAAAATGTGAAGCGAAAGCCATTCCTTTAACAAGAAAAGTGCATTTATAGTCACTCCTGCCTTAA
1 AAACA--TGAAGCGAAAGCCA-TCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTA
* * *
235132 AAAGCCTATTTACTTACTTCAAA-TGATTTTGTAATCTTATAAA-AGATTTTAAATTGAATTTTT
63 AAAGCTTA-TTACTTGCTT-AAAGTGATTTTATAAT-TTATAAATA-ATTTTAAATTGAATTTTT
* * * ** *** **
235195 T-TCATTTCTAGTTAAAACATATCAAAATTTCTTGTTTGCATT-AGGAAAGGCGAAGCGAAAATC
124 TAT-ATTTTTAGTTAAAACAGATCATAATTTGATGTTTGCATTGA-GAAACATGAAGCGAAAGCC
* * * * * * * **
235258 ATCCACTGATAAGAAAAGTCCATTTATAGTGACTAATGCCTTCGAAAGCCTAGTTAGTTGCTTTA
187 ATCCATTGACAAGAAAAGTCCATTTATAGTCACTTATGCCTTCAAAAGCCTATTTACTCACTTTA
* * ** ** * * *
235323 AATGGTTTTAGAATAGTATAGAA-GATTTTAAAATTGAATT-TTGCTCATTTTTGGTTAAAACAA
252 AATGATTTTATAATCTTATA-AATGATTTT-AAATTGAATTATTTTTTATTTTTAGTTAAAACAG
* * ** *
235386 ATCATAATTTGATATTTACGTTGGC
315 ATCATAATTTGATGTTTGC-ACGGA
* * * * * * * * *
235411 AAACATAAAGCAAAAGCCATGCATTGATAAGAAAACTCTATTTATAGTCACTCATGCCTTCATAG
1 AAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAAAA
*** * *
235476 GCCTTGCCACTTGCTTTAAGTGGA-TTTATAAGTTTTTAAATAATTTTAAA-TGAAATTGTTTTA
66 G-CTTATTACTTGCTTAAAGT-GATTTTATAA-TTTATAAATAATTTTAAATTG-AATT-TTTTA
* * ** * * * * *
235539 TACTTTTGGTTAAAGTAAATCATAATTTGATATTTGC-TTTAGGAAA-AAGAAGCGTAAGCCATC
126 TATTTTTAGTTAAAACAGATCATAATTTGATGTTTGCATTGA-GAAACATGAAGCGAAAGCCATC
* * ** * *
235602 CATTGATAAGAAAAAAT-CATTTATAGTTGCTTATGCCTTCAAAAGCCTATTTACTCGCTTCAAA
190 CATTGACAAG-AAAAGTCCATTTATAGTCACTTATGCCTTCAAAAGCCTATTTACTCACTTTAAA
* * * *
235666 T-AGTTTTATAATCTTATAAATGATTTAAAATT-AAATATTTTTTATTTTTTGATTAAAACAAAT
254 TGA-TTTTATAATCTTATAAATGATTTTAAATTGAATTATTTTTTATTTTTAG-TTAAAACAGAT
* * *
235729 CATAATTTGTTGTTTTCATAGG-
317 CATAATTTGATGTTTGCA-CGGA
** * * * * * **
235751 AAACAT-AGAGC-ATAAATCTTCCACTAACAAGAAAAGTCCA-TTATAGTCACTTATGTCTTCGA
1 AAACATGA-AGCGA-AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAA
* * ** * * * *
235813 AAGCCTAGTTAATCACTTTATA-T-AGTTTTGTAATCTTATAAATGATTTTAAAATTGAATGTTT
64 AAGCTTA-TTACTTGC-TTAAAGTGA-TTTTATAAT-TTATAAATAATTTT-AAATTGAATTTTT
* * * * * * *
235876 CATATTTTTGGTTAAAATAGATCATAATTTGATGTTTACATT-AGGAAACATCAAGTGAAAGACA
124 TATATTTTTAGTTAAAACAGATCATAATTTGATGTTTGCATTGA-GAAACATGAAGCGAAAGCCA
** * * * * **
235940 TCCATTGTTAAGAAAAGTTCATTTATATTTA-TTCAAT-CCTTCAAAAGCCT-TGTTATTTGCTT
188 TCCATTGACAAGAAAAGTCCATTTATAGTCACTT--ATGCCTTCAAAAGCCTAT-TTACTCACTT
* * * * * * * *
236002 TAAGTGGA-TTCACAA-CTTCATAAATAATTTTAAAATAAATT-TTTTTACATTTTTTGTT-AAA
250 TAAAT-GATTTTATAATCTT-ATAAATGATTTTAAATTGAATTATTTTT-TATTTTTAGTTAAAA
* * *
236063 CAGATCAAAATTTGATGTTTCCATC-AA
312 CAGATCATAATTTGATGTTTGCA-CGGA
* * * * * * * * *
236090 GAAACGTGAAGTGAAAGCCATCTATTGACAAGAAAAGTCTATTTAGACTCCCTCATTCCTTCAAA
1 -AAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAAA
* * ** * * ** *
236155 AGCCTATTTGCTCACTTCAAA-TGGTTTTATAATCTTATAAATAATTTCAAATTGAATAGTTTCT
65 AGCTTA-TTACTTGCTT-AAAGTGATTTTATAAT-TTATAAATAATTTTAAATTGAATTTTTTAT
* * * * * * * **
236219 CATTTTTAGTTAAAACATATCAAAATTT-ATTATTTGCATTGGGAAAGATAAAGTGAAAATCATC
127 -ATTTTTAGTTAAAACAGATCATAATTTGA-TGTTTGCATTGAGAAACATGAAGCGAAAGCCATC
* * * * * *
236283 TATTGATAAGAAAAGTCCATTTATAGTCAC-TAGTACCTTCGAAAGCCTAGTTAGTCACTTTTAA
190 CATTGACAAGAAAAGTCCATTTATAGTCACTTA-TGCCTTCAAAAGCCTATTTACTCAC-TTTAA
* * ** * * ** **
236347 TTG-TTTTATAAGCTTATACCTTATTCTAAAATTGAATT-TTTTTGCTTTGGA-TTAAAACAGAT
253 ATGATTTTATAATCTTATAAATGATT-TTAAATTGAATTATTTTTTATTTTTAGTTAAAACAGAT
* * **
236409 CATAATTTGATATTTGTATTGA
317 CATAATTTGATGTTTGCACGGA
** * * * *
236431 GAAACATGAAATGAAAGCCATCCATTGATAAGAAAAGTCCAATTATAATTGCA-T-ATGCCTTCA
1 -AAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT-AGT-CACTCATGCCTTTA
* * * * *
236494 AAAGCTTATTTACTTGATTCAAA-TGGTTTTATAATCATACAAATGATTTTAAATTGATCAATTT
63 AAAGCTTA-TTACTTGCTT-AAAGTGATTTTATAAT-TTATAAATAATTTTAAATTG---AATTT
* * * * * * * * *
236558 TTT-CATTTTTGGTTCAAACAGATCA-AAATTGTTTGTTTGCA-TCAGGAAGCATGAAGCAAAAA
122 TTTATATTTTTAGTTAAAACAGATCATAATTTG-ATGTTTGCATTGA-GAAACATGAAGCGAAAG
*
236620 TCATCCATTGA
185 CCATCCATTGA
236631 TAAATGTACT
Statistics
Matches: 3513, Mismatches: 844, Indels: 534
0.72 0.17 0.11
Matches are distributed among these distances:
327 1 0.00
328 6 0.00
329 62 0.02
330 114 0.03
331 24 0.01
332 27 0.01
333 30 0.01
334 127 0.04
335 112 0.03
336 19 0.01
337 9 0.00
338 30 0.01
339 356 0.10
340 301 0.09
341 1197 0.34
342 619 0.18
343 127 0.04
344 36 0.01
345 59 0.02
346 2 0.00
348 52 0.01
349 21 0.01
350 3 0.00
351 130 0.04
352 34 0.01
353 12 0.00
354 3 0.00
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (338 bp):
AAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAAAA
GCTTATTACTTGCTTAAAGTGATTTTATAATTTATAAATAATTTTAAATTGAATTTTTTATATTT
TTAGTTAAAACAGATCATAATTTGATGTTTGCATTGAGAAACATGAAGCGAAAGCCATCCATTGA
CAAGAAAAGTCCATTTATAGTCACTTATGCCTTCAAAAGCCTATTTACTCACTTTAAATGATTTT
ATAATCTTATAAATGATTTTAAATTGAATTATTTTTTATTTTTAGTTAAAACAGATCATAATTTG
ATGTTTGCACGGA
Found at i:233943 original size:160 final size:160
Alignment explanation
Indices: 233663--233987 Score: 410
Period size: 160 Copynumber: 2.0 Consensus size: 160
233653 AAATGATTGC
* * * *
233663 AAATTGATTGTTTTTTCATTTTTGATTAACAAAGATTATAGTTTGCTGTTTACATTAGGAAACGT
1 AAATTGATTGTTTTTTCATTTTTGATTAACAAAGATCATAGTTTGATGTTTACATCAAGAAACGT
**
233728 GAAGCGAAAACCATCCATTGGTAACAAAAGTCTATTATAGTCACTCATACCTTTAAAAGCCTTGC
66 GAAGCGAAAACCATCCATTGACAACAAAAGTCTATTATAGTCACTCATACCTTTAAAAGCCTTGC
** * * *
233793 TACTTGTTTTAAGTGGATTTCTAACTTTTT
131 TACTCATTTTAAATAGATTTATAACTTTTT
*
233823 AAATTGAATTGTTTTTTACGTTTTTCG-TTAA-AATAGATCATA-TTTGATGTTTGA-ATCAAGA
1 AAATTG-ATTGTTTTTT-CATTTTT-GATTAACAA-AGATCATAGTTTGATGTTT-ACATCAAGA
* * *
233884 AAC-TGAAGC-AAAACCATCCATTTACAATAAAAGTCTATTTATAGTCACTCATGCCTTTAAAAG
61 AACGTGAAGCGAAAACCATCCATTGACAACAAAAGTCTA-TTATAGTCACTCATACCTTTAAAAG
*
233947 CCTTGTTACTCATTTTAAATAGATTTATAACTTTTT
125 CCTTGCTACTCATTTTAAATAGATTTATAACTTTTT
233983 AAATT
1 AAATT
233988 ATTTTAAATT
Statistics
Matches: 143, Mismatches: 16, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
159 24 0.17
160 71 0.50
161 29 0.20
162 18 0.13
163 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (160 bp):
AAATTGATTGTTTTTTCATTTTTGATTAACAAAGATCATAGTTTGATGTTTACATCAAGAAACGT
GAAGCGAAAACCATCCATTGACAACAAAAGTCTATTATAGTCACTCATACCTTTAAAAGCCTTGC
TACTCATTTTAAATAGATTTATAACTTTTT
Found at i:235064 original size:163 final size:165
Alignment explanation
Indices: 234814--235121 Score: 387
Period size: 164 Copynumber: 1.9 Consensus size: 165
234804 TGTTACTTGA
* *
234814 TTTAAGTGGATTAATAACATTATAAATGATTTTAGATTGAATTATTTGATATTTTTAGTTAAAAT
1 TTTAAGTGGATTAATAACATTATAAATGATTTTAGACTAAATTATTTGATATTTTTAGTTAAAAT
** *
234879 AAATCATAATTTGATATTTACA-TAGGGAAATGTGAAGCGAAAGCCA-TCCATTGACAA-AAAAT
66 AAATCATAATTTGATATTTACATTA-AAAAATGTGAAGCGAAAGCCATTCCATTAACAAGAAAA-
234941 GTCCATTTATAGTCACTTAGAAAGCCTTGTTACTCAC
129 GTCCATTTATAGTCACTTAGAAAGCCTTGTTACTCAC
* * * * *
234978 TTTAAGTGGATTTATAACTTTTTAAAT-ACTTTTTA-ACTAAATT-TTTTATATTTTTGGTTAAA
1 TTTAAGTGGATTAATAACATTATAAATGA--TTTTAGACTAAATTATTTGATATTTTTAGTTAAA
* * * *
235040 ACT-GATCGTAATTTGATGTTTACATTAAAAAATGTGAAGCGAAAGCCATTCCTTTAACAAGAAA
64 A-TAAATCATAATTTGATATTTACATTAAAAAATGTGAAGCGAAAGCCATTCCATTAACAAGAAA
*
235104 AGTGCATTTATAGTCACT
128 AGTCCATTTATAGTCACT
235122 CCTGCCTTAA
Statistics
Matches: 123, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
163 56 0.46
164 58 0.47
165 9 0.07
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.39
Consensus pattern (165 bp):
TTTAAGTGGATTAATAACATTATAAATGATTTTAGACTAAATTATTTGATATTTTTAGTTAAAAT
AAATCATAATTTGATATTTACATTAAAAAATGTGAAGCGAAAGCCATTCCATTAACAAGAAAAGT
CCATTTATAGTCACTTAGAAAGCCTTGTTACTCAC
Found at i:236197 original size:170 final size:170
Alignment explanation
Indices: 233819--236613 Score: 1708
Period size: 171 Copynumber: 16.4 Consensus size: 170
233809 ATTTCTAACT
* * * * * * *
233819 TTTTAAATTGAATTGTTTTTTACGTTTTTCGTTAAAATAGATCAT-ATTTGATGTTTGAATCAAG
1 TTTTAAAATGAA-T-TTTTTT-CATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTAGG
* * * * * *
233883 AAAC-TGAAG-CAAAACCATCCATTTACAATAAAAGTCTATTTATAGTCACTCATGCCTTTAAAA
63 AAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAA
* * * * *
233946 GCCT-TGTTACTCATTTTAAATAGATTTATAA-CTTTTTAAATTA
128 GCCTAT-TTACTCACTTTAAATGGTTTTATAATC-TTATAAATGA
* * * * * *
233989 TTTT-AAATTAATTTTTTTTACA-TTTTAGTTAAAACATATCATAATTTAATGTTTGCATCAAGA
1 TTTTAAAATGAA-TTTTTTT-CATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTAGGA
* * * * **
234052 ATCATGAAGTGAAAAG-CATCCATTGGCAAAAAAAGTCCATTTATAATGGCTCATGCCTTCAAAA
64 AACATGAAGTG-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC-AAA
* * * *
234116 AGCCTATTTACTCGCTTTAAATAGTTTTATTATCTTAAAAATGA
127 AGCCTATTTACTCACTTTAAATGGTTTTATAATCTTATAAATGA
* * * * * * * * *
234160 TTTCAAATTGATTTTTTTTTAATTTTTGGTTAAAATAGATAATAATTTGTTATTTGCATTAAGAA
1 TTTTAAAATGA-ATTTTTTTCATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTAGGAA
* * * * * * ** *
234225 ACATGAAGCGAAAACCATCCATTGAGAAGAAGACTCCATTTATAGCCACAAATGTCTTCAAAAGC
65 ACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGC
* * * *
234290 CTAATTAGTCATTTTAAATAGTTTTATAATCTTATAAATGA
130 CTATTTACTCACTTTAAATGGTTTTATAATCTTATAAATGA
* * ** * * *
234331 TTTTAAAATTGAAGTTTTCTCATTTTTTCTTAACACGGATCATAATTTGATGTTTGCA-TCGGAA
1 TTTTAAAA-TGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTAGG-A
** * *
234395 AACATGAAGCAAAAGCCATCTATTGACAAGAAAAG-CTCATTTATAGTTAC-CGATGCCTTCAAA
64 AACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTC-CATTTATAGTCACTC-ATGCCTTCAAA
* * * * *
234458 AACCTATTTAGTCATTTTAAATGGTTTTATAATCTTAGAAATAA
127 AGCCTATTTACTCACTTTAAATGGTTTTATAATCTTATAAATGA
* ** * * * *
234502 TTTTAAAATTGAATTTTCTT-ATTTTTGGTTAACGCAAATTATAATTTGATGTTTACA-TGGGAA
1 TTTTAAAA-TGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTAGGAA
* ** * * * * * *
234565 A-ATGTGAAGTTAAAGTGATCCATTGACAA-AGAAAGCCCATTTATAGTCTCTTATGTCATCGAA
65 ACA--TGAAGTGAAAGCCATCCATTGACAAGA-AAAGTCCATTTATAGTCACTCATGCCTTCAAA
* * * * * * *
234628 AGTCTA-GTAGGTCACTTTAAACGATTTTATAATCCTATGAATGA
127 AGCCTATTTA-CTCACTTTAAATGGTTTTATAATCTTATAAATGA
* ** ** *
234672 TTTTAAAATTGAATTATTCTT-ATTTTTTATTAAAACAGATCATAATTTGATGTTAAC-TTCAAG
1 TTTTAAAA-TGAATT-TTTTTCATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATT-AGG
* * * * * * * *
234735 AAACGCT-AAGTAAAAGCCATCCACTAAAAAGAAAAGTCTATTTATGGTCACTTATGCCTTCAAA
63 AAAC-ATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAA
* * * *
234799 AG-CTATGTTACTTGA-TTTAAGTGGATTAATAA-CATTATAAATGA
127 AGCCTAT-TTAC-TCACTTTAAATGGTTTTATAATC-TTATAAATGA
* * * * * * * *
234843 TTTTAGATTGAATTATTTGAT-ATTTTTAGTTAAAATAAATCATAATTTGATATTTACA-TAGGG
1 TTTTAAAATGAATT-TTT-TTCATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTA-GG
** * *
234906 AAATGTGAAGCGAAAGCCATCCATTGACAA-AAAATGTCCATTTATAGTCACTTA-G------AA
63 AAACATGAAGTGAAAGCCATCCATTGACAAGAAAA-GTCCATTTATAGTCACTCATGCCTTCAAA
* * *
234963 AGCCT-TGTTACTCACTTTAAGTGGATTTATAA-CTTTTTAAAT-A
127 AGCCTAT-TTACTCACTTTAAATGGTTTTATAATC-TTATAAATGA
* * * * * * **
235006 CTTTTTAACTAAATTTTTTAT-ATTTTTGGTTAAAACTGATCGTAATTTGATGTTTACATTAAAA
1 -TTTTAAAATGAATTTTTT-TCATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTAGGA
** * * * * * *
235070 AATGTGAAGCGAAAGCCATTCCTTTAACAAGAAAAGTGCATTTATAGTCACTCCTGCCTTAAAAA
64 AACATGAAGTGAAAGCCA-TCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAA
* * * * *
235135 GCCTATTTACTTACTTCAAATGATTTTGTAATCTTATAAAAGA
128 GCCTATTTACTCACTTTAAATGGTTTTATAATCTTATAAATGA
* * * * * **
235178 TTTTAAATTGAATTTTTTTCATTTCTAGTTAAAACATATCAAAATTTCTTGTTTGCATTAGGAAA
1 TTTTAAAATGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTAGGAAA
*** * ** * * * * *
235243 GGCGAAGCGAAAATCATCCACTGATAAGAAAAGTCCATTTATAGTGACTAATGCCTTCGAAAGCC
66 CATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCC
* * ** * **
235308 TAGTTAGTTGCTTTAAATGGTTTTAGAATAGTATAGAA-GA
131 TATTTACTCACTTTAAATGGTTTTATAATCTTATA-AATGA
** * * * *
235348 TTTTAAAATTGAATTTTGCTCATTTTTGGTTAAAACAAATCATAATTTGATATTTACGTT-GGCA
1 TTTTAAAA-TGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTAGG-A
* ** * * * * * *
235412 AACATAAAGCAAAAGCCATGCATTGATAAGAAAACTCTATTTATAGTCACTCATGCCTTCATAGG
64 AACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAG
** ** * * * *
235477 CCT-TGCCACTTGCTTTAAGTGGATTTATAAGT-TTTTAAATAA
129 CCTAT-TTACTCACTTTAAATGGTTTTATAA-TCTTATAAATGA
* ** * * *
235519 TTTT-AAATGAAATTGTTTTAT-ACTTTTGGTTAAAGTAAATCATAATTTGATATTTGCTTTAGG
1 TTTTAAAATG-AATT-TTTT-TCATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTAGG
* * * * * ** *
235582 AAA-AAGAAGCGTAAGCCATCCATTGATAAGAAAAAAT-CATTTATAGTTGCTTATGCCTTCAAA
63 AAACATGAAGTGAAAGCCATCCATTGACAAG-AAAAGTCCATTTATAGTCACTCATGCCTTCAAA
* * *
235645 AGCCTATTTACTCGCTTCAAATAGTTTTATAATCTTATAAATGA
127 AGCCTATTTACTCACTTTAAATGGTTTTATAATCTTATAAATGA
* * * * *
235689 -TTTAAAATTAAATATTTTTT-ATTTTTTGATTAAAACAAATCATAATTTGTTGTTTTCA-TAGG
1 TTTTAAAA-TGAAT-TTTTTTCA-TTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTAGG
* * * * * * *
235751 AAACAT-AGAGCAT-AAA-TCTTCCACTAACAAGAAAAGTCCA-TTATAGTCACTTATGTCTTCG
63 AAACATGA-AG--TGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCA
* * * * *
235812 AAAGCCTAGTTAATCACTTTATATAGTTTTGTAATCTTATAAATGA
125 AAAGCCTATTTACTCACTTTAAATGGTTTTATAATCTTATAAATGA
** * *
235858 TTTTAAAATTGAATGTTTCAT-ATTTTTGGTTAAAATAGATCATAATTTGATGTTTACATTAGGA
1 TTTTAAAA-TGAAT-TTTTTTCATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTAGGA
* * ** * * * *
235922 AACATCAAGTGAAAGACATCCATTGTTAAGAAAAGTTCATTTATATTTATTCAAT-CCTTCAAAA
64 AACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC-ATGCCTTCAAAA
* ** * * * * *
235986 GCCT-TGTTATTTGCTTTAAGTGGATTCACAA-CTTCATAAATAA
128 GCCTAT-TTACTCACTTTAAATGGTTTTATAATCTT-ATAAATGA
* * * * * *
236029 TTTTAAAATAAATTTTTTTACATTTTTTGTT-AAACAGATCAAAATTTGATGTTTCCATCAAGAA
1 TTTTAAAATGAATTTTTTT-CATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTAGGAA
* * * * * * *
236093 ACGTGAAGTGAAAGCCATCTATTGACAAGAAAAGTCTATTTAGACTCCCTCATTCCTTCAAAAGC
65 ACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGC
* * *
236158 CTATTTGCTCACTTCAAATGGTTTTATAATCTTATAAATAA
130 CTATTTACTCACTTTAAATGGTTTTATAATCTTATAAATGA
* * * * * * * * *
236199 TTTCAAATTGAATAGTTTCTCATTTTTAGTTAAAACATATCAAAATTT-ATTATTTGCATTGGGA
1 TTTTAAAATGAAT-TTTTTTCATTTTTGGTTAAAACAGATCATAATTTGA-TGTTTGCATTAGGA
* * ** * * * *
236263 AAGATAAAGTGAAAATCATCTATTGATAAGAAAAGTCCATTTATAGTCACT-AGTACCTTCGAAA
64 AACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA-TGCCTTCAAAA
* * * * * ** *
236327 GCCTAGTTAGTCACTTTTAATTGTTTTATAAGCTTATACCTTA
128 GCCTATTTACTCACTTTAAATGGTTTTATAATCTTATAAATGA
* * *
236370 TTCTAAAATTGAATTTTTTTGC---TTTGGATTAAAACAGATCATAATTTGATATTTGTATT-GA
1 TTTTAAAA-TGAATTTTTTT-CATTTTTGG-TTAAAACAGATCATAATTTGATGTTTGCATTAG-
* * * *
236431 GAAACATGAAATGAAAGCCATCCATTGATAAGAAAAGTCCAATTATAATTGCA-T-ATGCCTTCA
62 GAAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT-AGT-CACTCATGCCTTCA
* * * * *
236494 AAAGCTTATTTACTTGA-TTCAAATGGTTTTATAATCATACAAATGA
125 AAAGCCTATTTAC-TCACTTTAAATGGTTTTATAATCTTATAAATGA
* * * * * *
236540 TTTTAAATTGATCAATTTTTTCATTTTTGGTTCAAACAGATCA-AAATTGTTTGTTTGCATCAGG
1 TTTTAAAATGA--ATTTTTTTCATTTTTGGTTAAAACAGATCATAATTTG-ATGTTTGCATTAGG
*
236604 AAGCATGAAG
63 AAACATGAAG
236614 CAAAAATCAT
Statistics
Matches: 2037, Mismatches: 479, Indels: 216
0.75 0.18 0.08
Matches are distributed among these distances:
163 57 0.03
164 71 0.03
165 7 0.00
167 17 0.01
168 30 0.01
169 144 0.07
170 683 0.34
171 877 0.43
172 145 0.07
173 6 0.00
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (170 bp):
TTTTAAAATGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATTAGGAAA
CATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCC
TATTTACTCACTTTAAATGGTTTTATAATCTTATAAATGA
Found at i:237566 original size:73 final size:73
Alignment explanation
Indices: 237466--237605 Score: 163
Period size: 73 Copynumber: 1.9 Consensus size: 73
237456 AACATTGCCA
** * * * * ** *
237466 CTTAGTCGATGAAGTTGTCTCTGTCTCTGAATCTAGTTTCTGGTAGTAGGCTCTTAGTCGACTAA
1 CTTAGTCGATGAAGTCCTCTCTATCTCTGAACCCAGTTTCTGGCAGTAAACACTTAGTCGACTAA
237531 CAAAACTT
66 CAAAACTT
* * * *
237539 CTTAGTCGATTAAGTCCTTTCTATCTCTGAACCCAGTTTTTGGCAGTAAACACTTAGTCGATTAA
1 CTTAGTCGATGAAGTCCTCTCTATCTCTGAACCCAGTTTCTGGCAGTAAACACTTAGTCGACTAA
237604 CA
66 CA
237606 CTGTCTCTTA
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
73 54 1.00
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (73 bp):
CTTAGTCGATGAAGTCCTCTCTATCTCTGAACCCAGTTTCTGGCAGTAAACACTTAGTCGACTAA
CAAAACTT
Found at i:242259 original size:341 final size:340
Alignment explanation
Indices: 241906--242847 Score: 812
Period size: 341 Copynumber: 2.7 Consensus size: 340
241896 CTATTGATAA
* ** * * * *
241906 AAAACGTCCATTTATTGTTGTTTATACCTTCAAAAGCCTAT-TTACTCGTTGCAAATGGTTTTCT
1 AAAA-GTCCATTTATAGTCATTTATACCTTCAAAAGCCT-TGTTACTCGTT-TAAGTGGATTTAT
*
241970 AATC-TTATAAATAATTTCAAATTGAATTTTAATTCATTTTTGGTTAAAACATATCATAGTTAGT
63 AA-CATTATAAATAATTT-AAATTGAATTTTAATTCATTTTTGGTTAAAACATATCATAGTTAGA
* ** * *
242034 TGTTCGCATAAGGAAACATAAAGCAAAAGTGATCCATTGTCAAGAAAAGTCTATCTATTCTCA-T
126 TGTTCGCATAAGGAAACATAAAGCAAAAGTCATCCATTGAAAAGAAAAATCTATCTATACTCACT
* * ** *
242098 TGATTCCTTGGAAAG-CTTAGTTACTCACTTTAAGTGGATGTATAAATTTATAAATGATTTTCAA
191 CG-TGCCTTCAAAAGTCTT-GTTAATCACTTTAAGTGGATGTATAAATTTATAAATGATTTT-AA
* **
242162 -TTGAATTACTTTACATTTTTAGTTGAAA-CAGACCATAATTTGATGTTTTTATCAAGAAACATG
253 TTTGAATTACTTTACATTTTTAGTT-AAAGCAGACCATAATTTAATGTTTGCATCAAGAAACATG
* *
242225 AAGCAAAAGATATCCATTGACAAG
317 AAACAAAAGATATCCATTAACAAG
* * *
242249 -AAAGTCCATTTATAGTCACTTATGCCTTCAAAAGCCTTGTTACTTGCTTTAAGTGGATTTATAA
1 AAAAGTCCATTTATAGTCATTTATACCTTCAAAAGCCTTGTTACTCG-TTTAAGTGGATTTATAA
* ** * * * *
242313 CTTTATAAACGATTGTAAATTGAATTACTTAA-T-ATATTTGGTTAAAGCATATCATAATTTGAT
65 CATTATAAATAATT-TAAATTGAATT--TTAATTCATTTTTGGTTAAAACATATCATAGTTAGAT
* * ** * * * *
242376 GTTTGTATCGGGAAACATTAAGTAAAAGTCATCCATTGAAAAGAAAAATCTATTTATAGTCACTC
127 GTTCGCATAAGGAAACATAAAGCAAAAGTCATCCATTGAAAAGAAAAATCTATCTATACTCACTC
* * * * *
242441 GTGCCTTCAAAAGTCTTGTTAATCTCTTTAAGTGGATTTATAACTTTTTAAATTATTTTAATTTT
192 GTGCCTTCAAAAGTCTTGTTAATCACTTTAAGTGGATGTATAAATTTATAAATGATTTTAA-TTT
** * * * * *
242506 GAATTTGTTTACATTTTTAGTTAAAGTAGATCATCATTTAATGTTTGCATTAGGAAACATGAAAC
256 GAATTACTTTACATTTTTAGTTAAAGCAGACCATAATTTAATGTTTGCATCAAGAAACATGAAAC
* * *
242571 AAATGTTATCCATTAACATG
321 AAAAGATATCCATTAACAAG
* * * * ** * *
242591 AAAAGTCTAATTAGAATCATCCATACCTTCAAAAGCTTTGTTACTCTTTTTAAGTGGATTTATAA
1 AAAAGTCCATTTATAGTCATTTATACCTTCAAAAGCCTTGTTACTC-GTTTAAGTGGATTTATAA
* * * * *
242656 CATTATAAATAATTTTAAACTAAATTTTGATTTCATTTTTGGTTAAAACATATAATAGTTTGATG
65 CATTATAAATAA-TTTAAATTGAATTTT-AATTCATTTTTGGTTAAAACATATCATAGTTAGATG
* * * * * * * *
242721 TTTGCAT-GGGAAA-ATGTGAAGCAAAAGCCATCCATTGACAAGACAAGTCTAGT-TATAGTCAC
128 TTCGCATAAGGAAACA--TAAAGCAAAAGTCATCCATTGAAAAGAAAAATCTA-TCTATACTCAC
** * * * * * * * *
242783 TTATGCCTTTAAAAG-CATTTTTACTCGCTTTAAGTGGATTTATAACTTTTTTAAATGATGTTAA
190 TCGTGCCTTCAAAAGTC-TTGTTAATCACTTTAAGTGGATGTATAA-ATTTATAAATGATTTTAA
242847 T
253 T
242848 GTAACACCCC
Statistics
Matches: 485, Mismatches: 92, Indels: 43
0.78 0.15 0.07
Matches are distributed among these distances:
340 4 0.01
341 190 0.39
342 82 0.17
343 82 0.17
344 111 0.23
345 16 0.03
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (340 bp):
AAAAGTCCATTTATAGTCATTTATACCTTCAAAAGCCTTGTTACTCGTTTAAGTGGATTTATAAC
ATTATAAATAATTTAAATTGAATTTTAATTCATTTTTGGTTAAAACATATCATAGTTAGATGTTC
GCATAAGGAAACATAAAGCAAAAGTCATCCATTGAAAAGAAAAATCTATCTATACTCACTCGTGC
CTTCAAAAGTCTTGTTAATCACTTTAAGTGGATGTATAAATTTATAAATGATTTTAATTTGAATT
ACTTTACATTTTTAGTTAAAGCAGACCATAATTTAATGTTTGCATCAAGAAACATGAAACAAAAG
ATATCCATTAACAAG
Found at i:242371 original size:170 final size:169
Alignment explanation
Indices: 241502--242846 Score: 743
Period size: 171 Copynumber: 7.9 Consensus size: 169
241492 TTGATTTTCA
* * * * ** **
241502 TTAAAACATATCACAATTTGTTGTTTGCATCAGGAAATGTGAAGCAAAACCATCCATTGACAAGA
1 TTAAAGCAGATCATAATTTGATGTTTGCATCAGGAAACATGAAGCAAAAGTATCCATTGACAAGA
* ** *** * * * * * *
241567 AAAGTCCATTTATAGTCACGAATGCCTTTGTAAG-CTTAGTTAGTCGCTTTAAATAGTTTTAGAA
66 AAAGTCTATTTATAGTCACTTATGCCTTCAAAAGCCTT-GTTACT-TCTTTAAGTGGATTTATAA
* ** *
241631 -TCTTATAAATGATTTTAAAATTGAATT-TTTCTCATTTTTTG
129 CT-TTATAAATGATTTT-AAATTGAATTACTTAACATTTTTAG
* * * * * * * * *
241672 TTAAAACTA-ATCATACTTTGATGTTTGCAT-TGAGAAAC-TAAAGCACAAGCCATTCACT-ATT
1 TTAAAGC-AGATCATAATTTGATGTTTGCATCAG-GAAACATGAAGCAAAAG-TATCCATTGA-C
* * * * *
241733 AAGAAAAGTTCT-TTTATAGTTACTCAAGCCTTCAAAAGTCGTT-TTAC-ACATATTAAGTGGAT
62 AAGAAAAG-TCTATTTATAGTCACTTATGCCTTCAAAAG-CCTTGTTACTTC-T-TTAAGTGGAT
* * * * *
241795 TTATAACTTTGTAAATGCTTTT-AGTTGGAATTATTTTACATTTTT-G
123 TTATAACTTTATAAATGATTTTAAATT-GAATTACTTAACATTTTTAG
* * * ** * * *
241841 ATTCAAA-CTA-ATTATAATTTGACGTTTGCAT-TGAGAAATGTGAAGTAAAAGCCATCTATTGA
1 -TT-AAAGC-AGATCATAATTTGATGTTTGCATCAG-GAAACATGAAGCAAAAG-TATCCATTGA
* * * *** * * * *
241903 TAA-AAAACGTCCATTTATTGTTGTTTATACCTTCAAAAGCCTAT-TTAC-TCGTTGCAAATGGT
61 CAAGAAAA-GTCTATTTATAGTCACTTATGCCTTCAAAAGCCT-TGTTACTTC-TT-TAAGTGGA
* * * *
241965 TTTCTAA-TCTTATAAATAATTTCAAATTGAATT--TTAATTCATTTTTGG
122 TTTATAACT-TTATAAATGATTTTAAATTGAATTACTTAA--CATTTTTAG
* * * * * * * * *
242013 TTAAAACATATCATAGTTAGTTGTTCGCATAAGGAAACATAAAGCAAAAGTGATCCATTGTCAAG
1 TTAAAGCAGATCATAATTTGATGTTTGCATCAGGAAACATGAAGCAAAAGT-ATCCATTGACAAG
* ** * ** * *
242078 AAAAGTCTATCTATTCTCA-TTGATTCCTTGGAAAG-CTTAGTTACTCACTTTAAGTGGATGTAT
65 AAAAGTCTATTTATAGTCACTT-ATGCCTTCAAAAGCCTT-GTTACT-TCTTTAAGTGGATTTAT
* * *
242141 AAATTTATAAATGATTTTCAATTGAATTACTTTACATTTTTAG
127 AACTTTATAAATGATTTTAAATTGAATTACTTAACATTTTTAG
* ** *
242184 TTGAAA-CAGACCATAATTTGATGTTTTTATCAAGAAACATGAAGCAAAAGATATCCATTGACAA
1 TT-AAAGCAGATCATAATTTGATGTTTGCATCAGGAAACATGAAGCAAAAG-TATCCATTGACAA
*
242248 G-AAAGTCCATTTATAGTCACTTATGCCTTCAAAAGCCTTGTTACTTGCTTTAAGTGGATTTATA
64 GAAAAGTCTATTTATAGTCACTTATGCCTTCAAAAGCCTTGTTACTT-CTTTAAGTGGATTTATA
* * * * *
242312 ACTTTATAAACGATTGTAAATTGAATTACTTAATATATTTGG
128 ACTTTATAAATGATTTTAAATTGAATTACTTAACATTTTTAG
* * * * * *
242354 TTAAAGCATATCATAATTTGATGTTTGTATCGGGAAACATTAAGTAAAAGTCATCCATTGAAAAG
1 TTAAAGCAGATCATAATTTGATGTTTGCATCAGGAAACATGAAGCAAAAGT-ATCCATTGACAAG
* ** * *
242419 AAAAATCTATTTATAGTCACTCGTGCCTTCAAAAGTCTTGTTAATCTCTTTAAGTGGATTTATAA
65 AAAAGTCTATTTATAGTCACTTATGCCTTCAAAAGCCTTGTTACT-TCTTTAAGTGGATTTATAA
* * * ** *
242484 CTTTTTAAATTATTTTAATTTTGAATTTGTTTACATTTTTAG
129 CTTTATAAATGATTTTAA-ATTGAATTACTTAACATTTTTAG
* * * * * * * *
242526 TTAAAGTAGATCATCATTTAATGTTTGCATTAGGAAACATGAAACAAATGTTATCCATTAACATG
1 TTAAAGCAGATCATAATTTGATGTTTGCATCAGGAAACATGAAGCAAAAG-TATCCATTGACAAG
* * * * * * *
242591 AAAAGTCTAATTAGAATCA-TCCATACCTTCAAAAGCTTTGTTACTCTTTTTAAGTGGATTTATA
65 AAAAGTCTATTTATAGTCACT-TATGCCTTCAAAAGCCTTGTTACT-TCTTTAAGTGGATTTATA
* * * * * *
242655 ACATTATAAATAATTTTAAACTAAATT--TTGATTTCATTTTTGG
128 ACTTTATAAATGATTTTAAATTGAATTACTT-A--ACATTTTTAG
* * * * * *
242698 TTAAAACATATAATAGTTTGATGTTTGCAT-GGGAAA-ATGTGAAGCAAAAGCCATCCATTGACA
1 TTAAAGCAGATCATAATTTGATGTTTGCATCAGGAAACA--TGAAGCAAAAG-TATCCATTGACA
* * * * * *
242761 AGACAAGTCTAGTTATAGTCACTTATGCCTTTAAAAGCATTTTTACTCGCTTTAAGTGGATTTAT
63 AGAAAAGTCTATTTATAGTCACTTATGCCTTCAAAAGCCTTGTTACT-TCTTTAAGTGGATTTAT
* *
242826 AACTTTTTTAAATGATGTTAA
127 AAC-TTTATAAATGATTTTAA
242847 TGTAACACCC
Statistics
Matches: 907, Mismatches: 211, Indels: 111
0.74 0.17 0.09
Matches are distributed among these distances:
168 4 0.00
169 27 0.03
170 279 0.31
171 321 0.35
172 257 0.28
173 19 0.02
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (169 bp):
TTAAAGCAGATCATAATTTGATGTTTGCATCAGGAAACATGAAGCAAAAGTATCCATTGACAAGA
AAAGTCTATTTATAGTCACTTATGCCTTCAAAAGCCTTGTTACTTCTTTAAGTGGATTTATAACT
TTATAAATGATTTTAAATTGAATTACTTAACATTTTTAG
Found at i:244419 original size:4 final size:4
Alignment explanation
Indices: 244405--244456 Score: 61
Period size: 4 Copynumber: 13.0 Consensus size: 4
244395 GCTAGGAAGC
* * *
244405 AAAG GAAG AAAG AAAG AAAG -GAG AAAG AAAG TAAAG AAAG AAAG GAAG
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG -AAAG AAAG AAAG AAAG
244453 AAAG
1 AAAG
244457 GAAGGTTCGG
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
3 2 0.05
4 34 0.85
5 4 0.10
ACGTcount: A:0.67, C:0.00, G:0.31, T:0.02
Consensus pattern (4 bp):
AAAG
Found at i:244457 original size:8 final size:8
Alignment explanation
Indices: 244398--244460 Score: 74
Period size: 8 Copynumber: 7.8 Consensus size: 8
244388 AGATTTAGCT
244398 AGGAAGCAA
1 AGGAAG-AA
244407 AGGAAGAA
1 AGGAAGAA
*
244415 AGAAAGAA
1 AGGAAGAA
244423 AGG-AGAA
1 AGGAAGAA
*
244430 AGAAAGTAA
1 AGGAAG-AA
*
244439 AGAAAGAA
1 AGGAAGAA
244447 AGGAAGAA
1 AGGAAGAA
244455 AGGAAG
1 AGGAAG
244461 GTTCGGCCTA
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
7 6 0.12
8 28 0.58
9 14 0.29
ACGTcount: A:0.63, C:0.02, G:0.33, T:0.02
Consensus pattern (8 bp):
AGGAAGAA
Found at i:250888 original size:171 final size:169
Alignment explanation
Indices: 250275--255999 Score: 1292
Period size: 171 Copynumber: 33.6 Consensus size: 169
250265 ATGAAGTAAG
* * * * * * * *
250275 AGCCATCCATTAACAAGAAAAGTCTATTTGTAGTCATTAATGCCTTCAAAAGCCTATTTACTCGC
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGTCA-TCATGCCTTCGAAAGCCTAGTTACTCAC
*** * * * *
250340 TCCAAATGG-TTTGATAA-TCTTATAAATGATTTTGAATTGAACTT-TATT-TCATTTCTAGTTA
65 TTTTAATGGATTT-ATAACT-TTATAAATGATTTTAAATTCAA-TTACATTAT-ATTT-TGGTTA
* * *
250401 AAACAGATCATAA-TT-A-GTTATTGCATCGGGAAATATAAAGCAAA
125 AAACATATCAGAATTTGATGTT-TTGCATTGGGAAATAT-AAGCAAA
* * * * *
250445 AACCATCCATTGTCAAGATAAGTTCATTTATTGTCATGGATGCCTTCGAAAG-CTAAGTTACTCA
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGTCAT-CATGCCTTCGAAAGCCT-AGTTACTCA
* *
250509 C-TTTAAGTGGATTTATAACTTTATAAATGATTTTAAATTGAATTACATTACATTTCTGGTTAAA
64 CTTTTAA-TGGATTTATAACTTTATAAATGATTTTAAATTCAATTACATTATATTT-TGGTTAAA
* ** * *
250573 ACATATCATAATTTGATGTTTTG-ATTGAAAAAAAGAAGCAAA
127 ACATATCAGAATTTGATGTTTTGCATTGGGAAATATAAGCAAA
* * * * * *
250615 AGCCATCCATTGACAA-CAAAGTCCATTTATAGTCATTTATGCCTTCGAAAGCCTTGTTATTTAC
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGTCA-TCATGCCTTCGAAAGCCTAGTTACTCAC
* * *
250679 TTTAAATGGATTTATAACTTTATAAATGATTTTAAATTCAATTACTTTATATATTTGGTTAAAGC
65 TTTTAATGGATTTATAACTTTATAAATGATTTTAAATTCAATTACATTATAT-TTTGGTTAAAAC
*
250744 ATATCAGAATTTGATG-TTTGCATTGGGAAATATATAGCTAA
129 ATATCAGAATTTGATGTTTTGCATTGGGAAATATA-AGCAAA
*
250785 AGCCATCCATTGACAAGAAAAGTCCATTTATTGTTACTCATGCCTTCGAAAGCCTAGTTACTCAC
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGTCA-TCATGCCTTCGAAAGCCTAGTTACTCAC
* * * *
250850 TTTTAATGGATCTATAACTGTATAAATGATTCTAAATTCAATTACGTTATATTTTTGGTTAAAAC
65 TTTTAATGGATTTATAACTTTATAAATGATTTTAAATTCAATTACATTATA-TTTTGGTTAAAAC
** ** * * *
250915 AGGTCATCATTTCATG--TTGACATCGGGAAACATGAAGCAAA
129 ATATCAGAATTTGATGTTTTG-CATTGGGAAATAT-AAGCAAA
* * * * * * * * ** * * **
250956 A-CCTATCAATTTA-TAGGAAAGTCCATTTATAGTCGTTCATTCCTTTGAAAGGTTTGTTATTTG
1 AGCC-ATCCATTGACAAGAAAAGTCCATTTATTGTC-ATCATGCCTTCGAAAGCCTAGTTACTCA
* * *** *
251019 C-TTTAAGTGCATTTATAACTTCT-TAAATGATTTTAAATTTAATTGTTTTATATTTTTGGCTAA
64 CTTTTAA-TGGATTTATAACTT-TATAAATGATTTTAAATTCAATTACATTATA-TTTTGGTTAA
* * ** * * * *
251082 AATATGTCATCATTT--T-TATTTGCATCGAGAAACATAAAGTAAA
126 AACATATCAGAATTTGATGT-TTTGCATTGGGAAATAT-AAGCAAA
* * * * * * *
251125 AGCCATACA-CGTATAAGAAAAAGTCCATTTATAGTCACTCATGCTTTCAAAAGTCTCA-TTACA
1 AGCCATCCATTG-ACAAG-AAAAGTCCATTTATTGTCA-TCATGCCTTCGAAAGCCT-AGTTAC-
* * * * * * * *
251188 T-GC-TTTAACTTGATTTATAACTTTTTAAATGATTTCAAATTGAA-T-CTTTCACATTTTTGAT
61 TCACTTTTAA-TGGATTTATAACTTTATAAATGATTTTAAATTCAATTACATT-ATA-TTTTGGT
* * * * ** *
251249 TAAAACAGT-TCACAATTTGATG-TTTACATAGGGGACCATGAAACAAA
123 TAAAACA-TATCAGAATTTGATGTTTTGCATTGGGAAATAT-AAGCAAA
**** * ** *
251296 AGCCATCCATTGACAATTTGA-T--GTTTACAAGTCACTCATGCCTTTC-AAAGCCCT-TTTACT
1 AGCCATCCATTGACAAGAAAAGTCCATTTA-TTGTCA-TCATGCC-TTCGAAAG-CCTAGTTACT
* * ** * ** * *
251356 CGCTTTAAATGGATTTATAACTTT-TTCATAGATTTTAAATTGAATT-TTTTCACATTTTTAGTT
62 CACTTTTAATGGATTTATAACTTTATAAAT-GATTTTAAATTCAATTACATT-ATA-TTTTGGTT
* ** * * * * *
251419 AAAACAGATCATCATTTTAAGTTTAG-ATTAGGAAAACATGATA-CAAA
124 AAAACATATCAGAATTTGATGTTTTGCATT-GGGAAATAT-A-AGCAAA
** * * * * ** * * *
251466 AGCCATCCATCAACAAGAAAAGTCTATTTATGGACACTTATTACTTC-AAAGTCTTGTTACTCGC
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGTCA-TCATGCCTTCGAAAGCCTAGTTACTCAC
* * * * * ** * * **
251530 -TTTAGGTAGATTTATAAATTTTTAAATGATTTTAAATTGAA-CCCTTTTACATTTTGAATAAAA
65 TTTTA-ATGGATTTATAACTTTATAAATGATTTTAAATTCAATTAC-ATTATATTTTGGTTAAAA
* * *** * *
251593 C-TCATCATAATTTGATG-TTTGGATCAAGAAATGTGAAACAAA
128 CAT-ATCAGAATTTGATGTTTTGCATTGGGAAATAT-AAGCAAA
* ** ** * *
251635 AGCCATCCATTGACCAA-AGAAGTCCATTTATACTCACTCACACCTTC-ACAAGTCTTGTTACTC
1 AGCCATCCATTGA-CAAGAAAAGTCCATTTATTGTCA-TCATGCCTTCGA-AAGCCTAGTTACTC
* * * *** **
251698 GC-TTTAAGTGGATTTATAACTATT-T-CATCGATTTTAAATTGAATTTTTTTATATTTCTCATT
63 ACTTTTAA-TGGATTTATAACT-TTATAAAT-GATTTTAAATTCAATTACATTATATTT-TGGTT
* ** * *
251760 AAAACAGATCATCATTTCATG-TTTGTATTGGGAAATATGAAGCAAA
124 AAAACATATCAGAATTTGATGTTTTGCATTGGGAAATAT-AAGCAAA
* * * * * * * * *
251806 AGCCATCAATTGACAAGAAAACTCTATTTATAGTAACTTATTCTTTCGAAAGCCTTA-TTACTTA
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGTCA-TCATGCCTTCGAAAGCC-TAGTTACTCA
* * * * * * * * * **
251870 C-TTAAAAGGATTTATAACTTTGTAAATTATTTTTAGTTGAATT--TTGTACATTTTCAATTAAA
64 CTTTTAATGGATTTATAACTTTATAAATGATTTTAAATTCAATTACAT-TATATTTT-GGTTAAA
* * * * *
251932 ACAGATCAAAATTTGATG-TTCGCATTGGGAAACATGAAGCAAG
127 ACATATCAGAATTTGATGTTTTGCATTGGGAAATAT-AAGCAAA
* ** * *** * * ** * *
251975 AGCTATATATTGACAAGAAAAGTCAATTTATAACCACTCAAGCTTTTAAAAGCCTTGTTACTC-G
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGTCA-TCATGCCTTCGAAAGCCTAGTTACTCAC
* * * * *** *
252039 TTTTAAGTGGATTTATAACTTTATAAATTATTTTTAGTTGAATTTTTTTTAGATTTTTGGTTAAA
65 TTTTAA-TGGATTTATAACTTTATAAATGATTTTAAATTCAA-TTACATTATA-TTTTGGTTAAA
* * * ** * ** *
252104 TCAGATGATCATTTCATG-TTTGCATTATGAAAAATGAAGCAAA
127 ACATATCAGAATTTGATGTTTTGCATTGGGAAATAT-AAGCAAA
* * * * * * * * *
252147 AGCCATTCAATGATAAGAAAAGCCCATTTATAGTCACTCATGCCTACAAAAGCCTTGTTACTTAC
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGTCA-TCATGCCTTCGAAAGCCTAGTTACTCAC
* * *** * *
252212 -TTTAA-GCGAATTTATAACTTTTTAAATGATTTTAAATTGAATTTTTTTACAGGTTTGGTTAAA
65 TTTTAATG-G-ATTTATAACTTTATAAATGATTTTAAATTCAATTACATTATA-TTTTGGTTAAA
* ** * * ** ** *
252275 ACAAATCATCATTTCATG-TTTACATTGAAAAACGTGAAGTAAA
127 ACATATCAGAATTTGATGTTTTGCATTGGGAAATAT-AAGCAAA
* * ** ** * *
252318 AGCCATCCATTAACAAAAAAAGATCCATTTATACTCATTCATGCCTTCGAAATTCTTGTTTCTC-
1 AGCCATCCATTGACAAGAAAAG-TCCATTTATTGTCA-TCATGCCTTCGAAAGCCTAGTTACTCA
* * ** * **
252382 GTTTTAAGTAGATTTATAACTTT-TTCATCGATATTAAATT-ATATT-TTTTATAATTTTTGGTT
64 CTTTTAA-TGGATTTATAACTTTATAAAT-GATTTTAAATTCA-ATTACATTAT-A-TTTTGGTT
* * * ** ** * *
252444 CAAATAGATCATCATTACATG-TTTGCATTAGGAAGTATGAAGCAAA
124 AAAACATATCAGAATTTGATGTTTTGCATTGGGAAATAT-AAGCAAA
** * *** * * * * *
252490 AGCCATTTATTGA-AAAACAAAGTCCATTTAAACTCACTCGTGCGTTCGAAGGCCTTGTTATTCA
1 AGCCATCCATTGACAAGA-AAAGTCCATTTATTGTCA-TCATGCCTTCGAAAGCCTAGTTACTCA
* ** * **
252554 C-TTTAAGTAGATTTATAACTTT-TTCATCAATTTTAAATGAAAATCTTTTTACATT-T-TTTT-
64 CTTTTAA-TGGATTTATAACTTTATAAAT-GATTTTAAAT-----TC-AATTACATTATATTTTG
* * * * * *
252614 GCTAAAACATATTATAATTTGTTG-TTTGCATTGAGAAACATGAAGCAAAA
121 GTTAAAACATATCAGAATTTGATGTTTTGCATTGGGAAATAT-AAGC-AAA
* * * * **
252664 AGCCATCCATTGATAGGAAAAGTCCATTTATAGTCATTCATGCCTTTGAAAGCCTTTTTACT-AG
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGTCA-TCATGCCTTCGAAAGCCTAGTTACTCA-
* * *** *
252728 C-TTTAAGTGGATTTATAATTTTATAAATGATTTTAAATTGAATTGTTTTACATTTTTGGTTAAA
64 CTTTTAA-TGGATTTATAACTTTATAAATGATTTTAAATTCAATTACATTATA-TTTTGGTTAAA
** * ** * * * * *
252792 TTAGATCATCATTTGTTG-TTTGCATCGAGAAACATGAGGCAAA
127 ACATATCAGAATTTGATGTTTTGCATTGGGAAATAT-AAGCAAA
* * ** ** * *
252835 AGTCATTCATTGGTAAGAAAAGTCCATTTATAATCACTTATGTCC-TCGAAAGCCTTGTTAC-CT
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGTCA-TCATG-CCTTCGAAAGCCTAGTTACTC-
* * * *
252898 GC-TTTAAGTGGATTTATAA-TGTCT-TAAATGATTTTAAATTGAATTTC-TCTACATTCTT--T
63 ACTTTTAA-TGGATTTATAACT-T-TATAAATGATTTTAAATTCAATTACAT-TATATT-TTGGT
** * ** *
252957 TATTAAA-ATAGTCATCATTTCATG-TTTGCATTAAGAAATATGAAGTAAA
123 TA--AAACATA-TCAGAATTTGATGTTTTGCATTGGGAAATAT-AAGCAAA
* * * * * * * *
253006 AGCCAACCATTTACAAGAAAAGTCTATTTATAGTCACTCATACCTTCAAAAGCCTTA-TTAATCG
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGTCA-TCATGCCTTCGAAAGCC-TAGTTACTCA
* ** * * * *
253070 C-TTTAATTAGATTTATAACTTT-TTCATCAATTTTAAATTTAATT-CTTTTATATTTTTGGTTT
64 CTTTTAA-TGGATTTATAACTTTATAAAT-GATTTTAAATTCAATTAC-ATTATA-TTTTGGTTA
* * * * * * ** * *
253132 GAATAGATCATCATTTTG-TGTTTGCATGCATAGATAAATGTGAAGTAAA
125 AAACATATCA-GAATTTGATGTTT---TGCATTGGGAAATAT-AAGCAAA
* * * * *
253181 AGCCAACCATTGAGAAAAAAAGTCCATTTATAGTCACTCATACCTTC-AAAGGCCTTA-TTACTC
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGTCA-TCATGCCTTCGAAA-GCC-TAGTTACTC
* ** * *
253244 AC-TTTAAGTGGATTTATAACTTTATAAATGATTTTAAATTGAATT-TTTTCACATTTTTGTTAA
63 ACTTTTAA-TGGATTTATAACTTTATAAATGATTTTAAATTCAATTACATT-ATATTTTGGTTAA
* * ** * * *
253307 AACAGATGATCATTTGATG-TTTGCATTAGGAAACATGAAGTAAA
126 AACATATCAGAATTTGATGTTTTGCATTGGGAAATAT-AAGCAAA
** * * * * *
253351 A-CCTATCCATTGACAAGAAAAGTGTATTTATAGTCACTCATACTTTTTGAAAGCCTTGTTACTC
1 AGCC-ATCCATTGACAAGAAAAGTCCATTTATTGTCA-TCATGC-CTTCGAAAGCCTAGTTACTC
* * * * ** *
253415 -GTTTTAAGTGGATTTATAACTTTTTAAATGATTTCAAATTGAATT-TTTTTTGCATTCTTGGTT
63 ACTTTTAA-TGGATTTATAACTTTATAAATGATTTTAAATTCAATTACATTAT--ATT-TTGGTT
* * * * * *
253478 GAAACATATCATAATTTGAT-CTTTACATTAGGAAACATTAAGCAAA
124 AAAACATATCAGAATTTGATGTTTTGCATTGGGAAATA-TAAGCAAA
* * * ** * * *
253524 AGCCATCCATTGAAAAGAAAAGTTCATTTATAGTCAATCACACCTTC-ATAAGCCTTGTTGCTCC
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGTC-ATCATGCCTTCGA-AAGCCTAGTTACTCA
* * * * ** * *
253588 CTTTAAATAGATTTATAAGTTTATAAATGATTTTAAATTGAATT-TTTTACACTTT--TT---AC
64 CTTTTAATGGATTTATAACTTTATAAATGATTTTAAATTCAATTACATTATATTTTGGTTAAAAC
* * *
253647 AT-T---AA--TGA----TTGCAATAGGAAACATGAAGCAAA
129 ATATCAGAATTTGATGTTTTGCATTGGGAAATAT-AAGCAAA
********** * * * * * *
253679 AGCCATCCATTGNNNNNNNNNNTCCATTTATAGTCACTCATACCTTCAAAACCCTTA-TTATTCG
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGTCA-TCATGCCTTCGAAAGCC-TAGTTACTCA
* * *** * ** *
253743 C-TTTAAGTGGATTAATAACTTTATAAATGATTTTAAATTAAATTTTTTTACATTTTTCATTCAA
64 CTTTTAA-TGGATTTATAACTTTATAAATGATTTTAAATTCAATTACATTATA-TTTTGGTTAAA
* ** * ** *
253807 ACAGATCATCATTTTAT-TTTTGCATTAAGAAACATAAAGCAAA
127 ACATATCAGAATTTGATGTTTTGCATTGGGAAATAT-AAGCAAA
* * * * * *
253850 AGCCATCCATTGATAAGAAAAGTCTATTTATAGTCCCTCATGCCTTTG-AAGCCTTGTTA-TCCA
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGT-CATCATGCCTTCGAAAGCCTAGTTACT-CA
* * * *** **
253913 C-TTTAAGTGGATTGATAACTTT-TTAATAGATTTTAAATTGAATTTTTTTATATTTTTCATTAA
64 CTTTTAA-TGGATTTATAACTTTATAAAT-GATTTTAAATTCAATTACATTATA-TTTTGGTTAA
* **** * **** * *
253976 AACGGT-TTTTCATTTGAT-CTTTGCACCAAGAAACATAAAGAAAA
126 AAC-ATATCAGAATTTGATGTTTTGCATTGGGAAATAT-AAGCAAA
* * * * ** * * * *
254020 AGTCATCTACTGACAAAAAAAGTTTATTTATAGTCACTCGTGCCTTCTGAAA-TCTTGTTACTCA
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGTCA-TCATGCCTTC-GAAAGCCTAGTTACTCA
* * * * * * * *** * *
254084 CTTTGAGT-AATTTTATAACTTTTTAAATTATTTTAGATTGAATTTTTTTACATTTTTGGTCAAA
64 CTTTTAATGGA-TTTATAACTTTATAAATGATTTTAAATTCAATTACATTATA-TTTTGGTTAAA
** * * * * * *
254148 ACAGGT-TGTCATTTCATCTTTT-CATTAGGAAACATGAAGCAAA
127 ACATATCAG-AATTTGATGTTTTGCATTGGGAAATAT-AAGCAAA
* ** * * * * *
254191 AGCCATCCATTAACAAGAAAAGTCTGTTTATAGTCACTCATACCTTCAAAAGTCTTGTTACTCA-
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGTCA-TCATGCCTTCGAAAGCCTAGTTACTCAC
* * *** * * * *
254255 TTTTAAATAGATTTATAACTTTATAAATGATTTTAAATTGAATTTTTTTACATTTTTAGTTCAAT
65 TTTT-AATGGATTTATAACTTTATAAATGATTTTAAATTCAATTACATTATA-TTTTGGTTAAAA
* * * * * *
254320 CAGACCATAATTTGAT-ATTTGTATTGGGAAACATGAAGCAAA
128 CATATCAGAATTTGATGTTTTGCATTGGGAAATAT-AAGCAAA
* * * * * * *
254362 AGCCAACCATTTA-AAAAAAAGTCCATTTATAGTCATTCATGCATTCGAAAGTCCTA-TTAATCG
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGTCA-TCATGCCTTCGAAAG-CCTAGTTACTCA
* * ** * * * ** * * *
254425 C-TTAAAGTGGATTTATTACTTT-TTCATCAATTTTAAGTTGAA-TATTTTCACATTTTTGGCTC
64 CTTTTAA-TGGATTTATAACTTTATAAAT-GATTTTAAATTCAATTACATT-ATA-TTTTGGTTA
* ** * **
254487 AAACAGATCATCATTTCATGTTTT-CA-TCAGAAATATGAAGCAAA
125 AAACATATCAGAATTTGATGTTTTGCATTGGGAAATAT-AAGCAAA
* * * * * * *
254531 AGTCATCCATTGATAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAATGCCTCGTTACTCGC
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGTCA-TCATGCCTTCGAAAGCCTAGTTACTCAC
* * * * **
254596 -TTTAAGTAGTTTTATAGCTTTATAAATGACTTTT-AATTGAATT-TTTTATATTTTTGGTTAAA
65 TTTTAA-TGGATTTATAACTTTATAAATGA-TTTTAAATTCAATTACATTATA-TTTTGGTTAAA
** * ** *
254658 ACATATCATCATTCGATG-TTTGCATT-GCCAATGTGAAGCAAA
127 ACATATCAGAATTTGATGTTTTGCATTGGGAAATAT-AAGCAAA
* * * * * *
254700 AGCCATCCATTGACAAG-AAAGTCTATTTATAGTCACTCATGTCTTCGAAAACCTTGTTACTCGC
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGTCA-TCATGCCTTCGAAAGCCTAGTTACTCAC
* * * * * * **
254764 -TTTAAGTTGATTTATAACTTTTTAAATGATTTTACATTAAAATT--TTTGTTCATTTCTTATTA
65 TTTTAA-TGGATTTATAACTTTATAAATGATTTTAAATT-CAATTACATT-AT-ATTT-TGGTTA
* * * *** *
254826 AAACATATCATAATTT-CT-TGTT-CATACCCAGAAATGTGAAGCAAA
125 AAACATATCAGAATTTGATGTTTTGCAT--TGGGAAATAT-AAGCAAA
** * * * * * *
254871 AATCATCCATTGACAAGAAAAGTTCATTTATAT-TCATTAATGCCTGCAAAAGCCTAGTTAGTCG
1 AGCCATCCATTGACAAGAAAAGTCCATTTAT-TGTCA-TCATGCCTTCGAAAGCCTAGTTACTCA
* * * * * * * *
254935 CTTTAAAT-GATTTTGTAA-TCTTGTAAATGATTTTAAAAGTGAATT--TTTCTCATTTTTTGTT
64 CTTTTAATGGA-TTTATAACT-TTATAAATGATTTT-AAATTCAATTACATTAT-A-TTTTGGTT
* * *
254996 AAAACAAATCATAATTTGATG-TTTGCATTGAGAAACGT-TAAGCAAA
124 AAAACATATCAGAATTTGATGTTTTGCATTGGGAAA--TATAAGCAAA
* * * * * * * * * * *
255042 AGTCATCCATTGTCGAGAAAAGTCCTTTTATAGTCCCTAAAGCCTTTGAAAG-CTATTTTACACA
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGT-CATCATGCCTTCGAAAGCCTA-GTTACTCA
* * * ** * ** * *
255106 -TATTCAGTGGATTTATAACTTTACAAATGATTTTAGTTTAAATTATTTTATGTTTTTAGTTAAA
64 CT-TTTAATGGATTTATAACTTTATAAATGATTTTAAATTCAATTACATTAT-ATTTTGGTTAAA
* ** * *** * *
255170 ACAGATCATTATTTGATG-TTTGTATCAAG-AATCATGAGGCGAA
127 ACATATCAGAATTTGATGTTTTGCATTGGGAAAT-AT-AAGCAAA
* * * * *
255213 AGCCATCAATTGACAA-AGAACGTCCATTTATAGTCACTCATGCCTAT-AAAAGCCTATTTACTC
1 AGCCATCCATTGACAAGA-AAAGTCCATTTATTGTCA-TCATGCCT-TCGAAAGCCTAGTTACTC
* * ** * * * * ** *
255276 GCATCAAAT-GATTTTATAATTTTATAAATAATTTTAAATTTATTTATTTTTTATTTTTGGTTAA
63 ACTTTTAATGGA-TTTATAACTTTATAAATGATTTTAAATTCAATTACATTATA-TTTTGGTTAA
* * * * * *** *
255340 AATAGATCATAGTTTGTTG-TTTGCATCAAGAAATGAGAAGCGAAA
126 AACATATCAGAATTTGATGTTTTGCATTGGGAAAT-ATAAGC-AAA
* * * ** * * * * *
255385 A-CTATCCATTGATAAGAAAAGTTCATTTATAATCACTCAAGCCTTCTAAAGCCTAATTTAATCG
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGTCA-TCATGCCTTCGAAAGCCT-AGTTACTCA
* * * * * **
255449 C-TTTAAGTGGTTTTATAAATTTTTAAATGATTTTAAGTTGAATT-TTTTATATTTTTGGTTAAA
64 CTTTTAA-TGGATTTATAACTTTATAAATGATTTTAAATTCAATTACATTATA-TTTTGGTTAAA
*** * ** * * * ** *
255512 ACGGGTTATTATTTCAT-CTTTGCATAGGGAAACGTGAAGTAAA
127 ACATATCAGAATTTGATGTTTTGCATTGGGAAATAT-AAGCAAA
* * * ** * *
255555 AACCATCCATTGATAAGAAAAGTCTATTTATAATCACTCATACCTTCGAAAGCCT-TTGTACTCA
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGTCA-TCATGCCTTCGAAAGCCTAGT-TACTCA
* * * * * * *** * * *
255619 C-TTGAACTTGATATATAAATTTAGAAATGATTTTAAATTGAATTTTTTTTTTTTTTGCTTAAAA
64 CTTTTAA-TGGATTTATAACTTTATAAATGATTTTAAATTCAATTACATTATATTTTGGTTAAAA
* * * ** * *
255683 CAGATCATAATTTGAT-TTGTGCATCAGCAAACATGAAGCAAA
128 CATATCAGAATTTGATGTTTTGCATTGGGAAATAT-AAGCAAA
* * * * * * ** * **
255725 AGCCATCCATTGATAAAAAAAGTCAATTTATAGTCACCTATGCCTTCGAAAGCTTTTTTAATTGC
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGTCATC-ATGCCTTCGAAAGCCTAGTTACTCAC
* * * * *** * *
255790 -TTTAAGTGGATTTATAACTTTTTGAATGATTGTAAATT-ATTTTTTTTTTAGATTTTTAGTTAA
65 TTTTAA-TGGATTTATAACTTTATAAATGATTTTAAATTCA--ATTACATTATA-TTTTGGTTAA
* * * ** *
255853 AAAATATCATAATTTGATG-TTTGTATTAAGAAACCTA-AAGTAAA
126 AACATATCAGAATTTGATGTTTTGCATTGGGAAA--TATAAGCAAA
* * * * * * *
255897 AGTCATCCATTGACAAGAAAAATCCATTTATAGTCATTTATACCTTCAAAAGCTTA-TTAACTCA
1 AGCCATCCATTGACAAGAAAAGTCCATTTATTGTCA-TCATGCCTTCGAAAGCCTAGTT-ACTCA
* * * * *
255961 -TTTCAAATTGCTTTATAACCTTGTAAATGATTTTAAATT
64 CTTT-TAATGGATTTATAACTTTATAAATGATTTTAAATT
256000 TGATGTTTGT
Statistics
Matches: 4321, Mismatches: 959, Indels: 548
0.74 0.16 0.09
Matches are distributed among these distances:
154 6 0.00
155 95 0.02
156 9 0.00
157 3 0.00
158 3 0.00
159 2 0.00
160 2 0.00
162 3 0.00
163 2 0.00
164 4 0.00
166 1 0.00
167 14 0.00
168 146 0.03
169 463 0.11
170 1029 0.24
171 1523 0.35
172 633 0.15
173 151 0.03
174 109 0.03
175 114 0.03
176 4 0.00
177 3 0.00
178 2 0.00
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.39
Consensus pattern (169 bp):
AGCCATCCATTGACAAGAAAAGTCCATTTATTGTCATCATGCCTTCGAAAGCCTAGTTACTCACT
TTTAATGGATTTATAACTTTATAAATGATTTTAAATTCAATTACATTATATTTTGGTTAAAACAT
ATCAGAATTTGATGTTTTGCATTGGGAAATATAAGCAAA
Found at i:251167 original size:341 final size:340
Alignment explanation
Indices: 250399--251177 Score: 784
Period size: 340 Copynumber: 2.3 Consensus size: 340
250389 CATTTCTAGT
* * * * * * * * * * *
250399 TAAAACAGATCATAATTAGTTA-TTGCATCGGGAAATATAAAGCAAAAACCATCCATTGTCAAGA
1 TAAAACATATCAGAATTTGATATTTGCATCGAGAAACATAAAGCTAAAGCCATACAGTGACAAGA
* * * * *
250463 TAAGTTCATTTATTGTCA-TGGATGCCTTCGAAAGCTAAGTTACTCACTTTAAGTGGATTTATAA
66 AAAGTCCATTTATAGTCACT-CATGCCTTCGAAAGCTAAGTTACTCACTTTAAGTGGATCTATAA
* * * * *
250527 CTTTATAAATGATTTTAAATTGAATTACATTACATTTCTGGTTAAAACATATCATAATTTGATGT
130 CTGTATAAATGATTCTAAATTCAATTACATTACATTTCTGGTTAAAACAGATCATAATTTCATGT
*** * * *
250592 TTTGATTGAAAAAAAGAAGCAAAAGCCATCCATTGACAACAAAGTCCATTTATAGTCATTTATGC
195 TGACATGGAAAAAAAGAAGCAAAAGCCATCAATTGACAACAAAGTCCATTTATAGTCATTCATGC
*
250657 CTTCGAAAGCCTTGTTATTTACTTTAAATGGATTTATAACTTTATAAATGATTTTAAATTCAATT
260 CTTCGAAAGCCTTGTTATTTACTTTAAATGCATTTATAACTTTATAAATGATTTTAAATTCAATT
*
250722 ACTTTATATATTTGGT
325 ACTTTATATATTTGGC
* * * * * * * *
250738 TAAAGCATATCAGAATTTGATGTTTGCATTGGGAAATATATAGCTAAAGCCATCCATTGACAAGA
1 TAAAACATATCAGAATTTGATATTTGCATCGAGAAACATAAAGCTAAAGCCATACAGTGACAAGA
* *
250803 AAAGTCCATTTATTGTTACTCATGCCTTCGAAAGCCT-AGTTACTCACTTTTAA-TGGATCTATA
66 AAAGTCCATTTATAGTCACTCATGCCTTCGAAAG-CTAAGTTACTCAC-TTTAAGTGGATCTATA
* * * * *
250866 ACTGTATAAATGATTCTAAATTCAATTACGTTATATTTTTGGTTAAAACAGGTCATCATTTCATG
129 ACTGTATAAATGATTCTAAATTCAATTACATTACATTTCTGGTTAAAACAGATCATAATTTCATG
* * * * * ** *
250931 TTGACATCGGGAAACATGAAGCAAAA-CCTATCAATTTATAGGAAAGTCCATTTATAGTCGTTCA
194 TTGACAT-GGAAAAAAAGAAGCAAAAGCC-ATCAATTGACAACAAAGTCCATTTATAGTCATTCA
* * ** * * *
250995 TTCCTTTGAAAGGTTTGTTATTTGCTTTAAGTGCATTTATAACTTCT-TAAATGATTTTAAATTT
257 TGCCTTCGAAAGCCTTGTTATTTACTTTAAATGCATTTATAACTT-TATAAATGATTTTAAATTC
** *
251059 AATTGTTTTATATTTTTGGC
321 AATTACTTTATATATTTGGC
* * ** * *
251079 TAAAATATGTCATCATTT-TTATTTGCATCGAGAAACATAAAG-TAAAAGCCATACACGT-ATAA
1 TAAAACATATCAGAATTTGATATTTGCATCGAGAAACATAAAGCT-AAAGCCATACA-GTGACAA
* *
251141 GAAAAAGTCCATTTATAGTCACTCATGCTTTCAAAAG
64 G-AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG
251178 TCTCATTACA
Statistics
Matches: 360, Mismatches: 70, Indels: 18
0.80 0.16 0.04
Matches are distributed among these distances:
339 17 0.05
340 177 0.49
341 165 0.46
342 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.37
Consensus pattern (340 bp):
TAAAACATATCAGAATTTGATATTTGCATCGAGAAACATAAAGCTAAAGCCATACAGTGACAAGA
AAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCTAAGTTACTCACTTTAAGTGGATCTATAAC
TGTATAAATGATTCTAAATTCAATTACATTACATTTCTGGTTAAAACAGATCATAATTTCATGTT
GACATGGAAAAAAAGAAGCAAAAGCCATCAATTGACAACAAAGTCCATTTATAGTCATTCATGCC
TTCGAAAGCCTTGTTATTTACTTTAAATGCATTTATAACTTTATAAATGATTTTAAATTCAATTA
CTTTATATATTTGGC
Found at i:255991 original size:342 final size:337
Alignment explanation
Indices: 249685--255999 Score: 3071
Period size: 341 Copynumber: 18.5 Consensus size: 337
249675 GTCGTTACAG
* * * * *
249685 TTAAATTGATTTTTTTTTA-ATTTTTGGTTAAAACATATCATAATTTGATGTTT-TCATTAGAAA
1 TTAAATTGA-ATTTTTTTACATTTTTAGTTAAAACAGATCATAATTTCATGTTTGT-ATAAGAAA
* * * * * * * * * * *
249748 AATGTGAAACAAAAGCCATCCATTAACAAAAAAAGTCTATATATTGACATTCATGCCTTCAAAGG
64 CA--TGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAAG
* * * * * * * **
249813 CTTTACTACACATTTCAAATGGTTTTATATC-CTATAAATAATTCCAAATTGAATTTGTTTTTTC
127 CCTTATTACTCATTT-AAATTGTTTTATAACTTTATAAATGATTTTAAATTGAATTT-TTTTTT-
* * * * * *
249877 CTTTTTGGTTAACACATATCATAATTT-ATTATTTGCATCA-AAAAATGTGAAGCCAAAGTCATC
189 -TTTTT-GTTAAAACAGATCATAATTTGA-TGTTTGCATCAGAAACA--TGAAGCAAAAGCCATC
* * * * * * * * ** * *
249940 TATTGATAAGAAAAGTCTATTTATAGTTACTAATACCTTTGAAAGCCTA-GTTAGCCGATTTAAA
249 CATTGATAAAAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG-CTATTTTAATCGCTTTAAG
* * *
250004 TAG-TTTA-AGAATCTTATAAATGATTT
313 TGGATTTATA-ACT-TTTTAAATGA-TT
* * * * * *
250030 TTAAAATTGAA-TTTTCTA-ATTTTTGGTTAAAACTA-ATGATAATTTGATATTTGCATCAAGAA
1 TT-AAATTGAATTTTTTTACATTTTTAGTTAAAAC-AGATCATAATTTCATGTTTGTAT-AAGAA
** * * * * **
250092 ATGTGAAGCAAAAGCTATTCATT-ATCAAGAAAAGTCCTTTTGTAAACACTCA-AGCCTTCGAAA
63 ACATGAAGCAAAAGCCATCCATTGA-CAAGAAAAGTCCATTTATAGTCACTCATA-CCTTC-AAA
* * * * * * * * * **
250155 A--CTGTTTTACACACATTAAATGGATTTAAAATTTTGTAAAT-AGCTTTAGTTTGAATTATTTT
125 AGCCT-TATTACTCA-TTTAAATTGTTTTATAACTTTATAAATGA-TTTTAAATTGAATT-TTTT
** * * * * * * *
250217 ACATTTTTGGTTCAAACTA-ATCATAATTTGACGTTTTCGTCAGGAAACATGAAGTAAGAGCCAT
186 -TTTTTTTTGTTAAAAC-AGATCATAATTTGATGTTTGCATCA-GAAACATGAAGCAAAAGCCAT
* * * * * * * * * **
250281 CCATTAACAAGAAAAGTCTATTTGTAGTCATTAATGCCTTCAAAAGCCTA-TTTACTCGCTCCAA
248 CCATTGATAAAAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG-CTATTTTAATCGCTTTAA
* *
250345 ATGG-TTTGATAA-TCTTATAAATGATT
312 GTGGATTT-ATAACT-TTTTAAATGATT
* * * * **
250371 TTGAATTGAACTTTATTT-CATTTCTAGTTAAAACAGATCATAA-TT-A-GTTATTGCATCGGGA
1 TTAAATTGAA-TTTTTTTACATTTTTAGTTAAAACAGATCATAATTTCATG-T-TTGTAT-AAGA
* * * * * * * * * *
250432 AATATAAAGCAAAAACCATCCATTGTCAAGATAAGTTCATTTATTGTCA-TGGATGCCTTCGAAA
62 AACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT-CATACCTTCAAAA
* * * * * **
250496 G-CTAAGTTACTCACTTTAAGTGGATTTATAACTTTATAAATGATTTTAAATTGAATTACATTAC
126 GCCTTA-TTACTCA-TTTAAATTGTTTTATAACTTTATAAATGATTTTAAATTGAATT--TTTTT
* * * * * * *
250560 ATTTCTGGTTAAAACATATCATAATTTGATGTTTTG-AT-TGAAAAAAAGAAGCAAAAGCCATCC
187 TTTTTTTGTTAAAACAGATCATAATTTGATG-TTTGCATCAG-AAACATGAAGCAAAAGCCATCC
* * * * * * ** *
250623 ATTGA-CAACAAAGTCCATTTATAGTCATTTATGCCTTCGAAAGCCT-TGTTATTTACTTTAAAT
250 ATTGATAAAAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG-CTATTTTAATCGCTTTAAGT
*
250686 GGATTTATAACTTTATAAATGATT
314 GGATTTATAACTTTTTAAATGATT
* ** * * * * * * * * ** *
250710 TTAAATTCAATTACTTTATATATTTGGTTAAAGCATATCAGAATTTGATGTTTGCATTGGGAAAT
1 TTAAATTGAATTTTTTTACATTTTTAGTTAAAACAGATCATAATTTCATGTTTGTA-TAAGAAAC
* * * * *
250775 AT-ATAGCTAAAGCCATCCATTGACAAGAAAAGTCCATTTATTGTTACTCATGCCTTCGAAAGCC
65 ATGA-AGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAAGCC
* * * * * * * * * *
250839 -TAGTTACTCACTTTTAATGGATCTATAACTGTATAAATGATTCTAAATTCAATTACGTTATATT
129 TTA-TTACTCA-TTTAAATTGTTTTATAACTTTATAAATGATTTTAAATTGAATT--TTTTTTTT
* * * * * *
250903 TTTGGTTAAAACAGGTCATCATTTCATG-TTGACATCGGGAAACATGAAGCAAAA-CCTATCAAT
190 TTTTGTTAAAACAGATCATAATTTGATGTTTG-CATC-AGAAACATGAAGCAAAAGCC-ATCCAT
* ** ** * * * * * *
250966 TTAT-AGGAAAGTCCATTTATAGTCGTTCATTCCTTTGAAAGGT-TTGTTATTTGCTTTAAGTGC
252 TGATAAAAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCTATT-TTAATCGCTTTAAGTGG
*
251029 ATTTATAACTTCTTAAATGATT
316 ATTTATAACTTTTTAAATGATT
* * * * * * * * * * *
251051 TTAAATTTAATTGTTTTATATTTTTGGCTAAAATATG-TCATCATTT-TTATTTGCATCGAGAAA
1 TTAAATTGAATTTTTTTACATTTTTAGTTAAAACA-GATCATAATTTCATGTTTGTAT-AAGAAA
* * * * * * *
251114 CATAAAGTAAAAGCCATACA-CGTATAAGAAAAAGTCCATTTATAGTCACTCATGCTTTCAAAAG
64 CATGAAGCAAAAGCCATCCATTG-ACAAG-AAAAGTCCATTTATAGTCACTCATACCTTCAAAAG
* * * * * * * ****
251178 TCTCATTACATGC-TTTAACTTGATTTATAACTTTTTAAATGATTTCAAATTGAATCTTTCACAT
127 CCTTATTAC-T-CATTTAAATTGTTTTATAACTTTATAAATGATTTTAAATTGAATTTTTTTTTT
* * * * * *
251242 TTTTGATTAAAACAGTTCACAATTTGATGTTTACAT-AGGGGACCATGAAACAAAAGCCATCCAT
190 TTTTG-TTAAAACAGATCATAATTTGATGTTTGCATCA--GAAACATGAAGCAAAAGCCATCCAT
* **** * * ** * *
251306 TGACAATTTGA-T--GTTTACAAGTCACTCATGCCTTTC-AAAGCCCTTTTACTCGCTTTAAATG
252 TGATAAAAAAAGTCCATTTA-TAGTCACTCATGCC-TTCGAAAGCTATTTTAATCGCTTTAAGTG
*
251367 GATTTATAACTTTTT-CATAGATT
315 GATTTATAACTTTTTAAAT-GATT
* * * * *
251390 TTAAATTGAATTTTTTCACATTTTTAGTTAAAACAGATCATCATTTTAAGTTTAG-ATTAGGAAA
1 TTAAATTGAATTTTTTTACATTTTTAGTTAAAACAGATCATAATTTCATGTTT-GTA-TAAG-AA
** * * * *
251454 ACATGATA-CAAAAGCCATCCATCAACAAGAAAAGTCTATTTATGGACACTTATTA-CTTC-AAA
63 ACATGA-AGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA-TACCTTCAAAA
* * * ** * * * * *** ***
251516 GTCTTGTTACTCGCTTTAGGTAGATTTATAAATTTTTAAATGATTTTAAATTGAACCCTTTTACA
126 GCCTTATTACTC-ATTTAAATTGTTTTATAACTTTATAAATGATTTTAAATTGAATTTTTTTTTT
* ** * ** *
251581 TTTTGAATAAAACTCATCATAATTTGATGTTTGGATCAAGAAATGTGAAACAAAAGCCATCCATT
190 TTTTG-TTAAAACAGATCATAATTTGATGTTTGCATC-AGAAACATGAAGCAAAAGCCATCCATT
** * * ** * *
251646 GACCAAAGAAGTCCATTTATACTCACTCACACCTTC-ACAAGTCT-TGTTACTCGCTTTAAGTGG
253 GATAAAAAAAGTCCATTTATAGTCACTCATGCCTTCGA-AAG-CTATTTTAATCGCTTTAAGTGG
* *
251709 ATTTATAACTATTT-CATCGATT
316 ATTTATAACTTTTTAAAT-GATT
* * * **
251731 TTAAATTGAATTTTTTTATATTTCTCA-TTAAAACAGATCATCATTTCATGTTTGTATTGGGAAA
1 TTAAATTGAATTTTTTTACATTT-TTAGTTAAAACAGATCATAATTTCATGTTTGTA-TAAGAAA
* * * * * * * * *
251795 TATGAAGCAAAAGCCATCAATTGACAAGAAAACTCTATTTATAGTAACTTATTCTTTCGAAAGCC
64 CATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAAGCC
* * ** * * * * * *** *
251860 TTATTACTTACTTAAAAGGATTTATAACTTTGTAAATTATTTTTAGTTGAATTTTGTACATTTTC
129 TTATTACTCATTTAAATTGTTTTATAACTTTATAAATGATTTTAAATTGAATTTT-TTTTTTTTT
** * * ** * * ** *
251925 AATTAAAACAGATCAAAATTTGATGTTCGCATTGGGAAACATGAAGCAAGAGCTATATATTGACA
193 TGTTAAAACAGATCATAATTTGATGTTTGCA-TCAGAAACATGAAGCAAAAGCCATCCATTGATA
* * ** * * ** * * *
251990 AGAAAAGTCAATTTATAACCACTCAAGCTTTTAAAAGCCT-TGTTACTCGTTTTAAGTGGATTTA
257 AAAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG-CTATTTTAATCGCTTTAAGTGGATTTA
* *
252054 TAACTTTATAAATTATT
321 TAACTTTTTAAATGATT
* * * * * * * * *
252071 TTTAGTTGAATTTTTTTTAGATTTTTGGTTAAATCAGATGATCATTTCATGTTTGCATTATGAAA
1 TTAAATTGAA-TTTTTTTACATTTTTAGTTAAAACAGATCATAATTTCATGTTTGTA-TAAGAAA
* * * * * * *
252136 AATGAAGCAAAAGCCATTCAATGATAAGAAAAGCCCATTTATAGTCACTCATGCCTACAAAAGCC
64 CATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAAGCC
* * ** * * ***
252201 TTGTTACTTACTTT-AAGCGAATTTATAACTTTTTAAATGATTTTAAATTGAATTTTTTTACAGG
129 TTATTACTCA-TTTAAATTG-TTTTATAACTTTATAAATGATTTTAAATTGAATTTTTTT--TTT
* * * * * * * * * *
252265 TTTGGTTAAAACAAATCATCATTTCATGTTTACATTGAAAAACGTGAAGTAAAAGCCATCCATTA
190 TTTTGTTAAAACAGATCATAATTTGATGTTTGCA-TCAGAAACATGAAGCAAAAGCCATCCATTG
* * * * * * *
252330 ACAAAAAAAGATCCATTTATACTCATTCATGCCTTCGAAATTCT-TGTTT-CTCGTTTTAAGTAG
254 ATAAAAAAAG-TCCATTTATAGTCACTCATGCCTTCGAAA-GCTAT-TTTAATCGCTTTAAGTGG
* *
252393 ATTTATAACTTTTT-CATCGATA
316 ATTTATAACTTTTTAAAT-GATT
* * * * * * *
252415 TTAAATT-ATATTTTTTATA-ATTTTTGGTTCAAATAGATCATCATTACATGTTTGCATTAGGAA
1 TTAAATTGA-ATTTTTT-TACATTTTTAGTTAAAACAGATCATAATTTCATGTTTGTA-TAAGAA
** ** * * * * * * * *
252478 GTATGAAGCAAAAGCCATTTATTGA-AAAACAAAGTCCATTTAAACTCACTCGTGCGTTCGAAGG
63 ACATGAAGCAAAAGCCATCCATTGACAAGA-AAAGTCCATTTATAGTCACTCATACCTTCAAAAG
* * * * * ** *
252542 CCTTGTTATTCACTTTAAGTAGATTTATAACTTT-TTCATCAATTTTAAA-TGAAAATCTTTTTA
127 CCTTATTACTCA-TTTAAATTGTTTTATAACTTTATAAAT-GATTTTAAATTG--AAT-TTTTT-
* * * * * *
252605 CATTTTTTTGCTAAAACATATTATAATTTGTTGTTTGCATTGAGAAACATGAAGCAAAAAGCCAT
186 -TTTTTTTTGTTAAAACAGATCATAATTTGATGTTTGCA-TCAGAAACATGAAGC-AAAAGCCAT
** * * * *
252670 CCATTGATAGGAAAAGTCCATTTATAGTCATTCATGCCTTTGAAAGCCT-TTTTACTAGCTTTAA
248 CCATTGATAAAAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG-CTATTTTAATCGCTTTAA
252734 GTGGATTTATAA-TTTTATAAATGATT
312 GTGGATTTATAACTTTT-TAAATGATT
* * ** * ** * *
252760 TTAAATTGAATTGTTTTACATTTTTGGTTAAATTAGATCATCATTTGTTGTTTGCATCGAGAAAC
1 TTAAATTGAATTTTTTTACATTTTTAGTTAAAACAGATCATAATTTCATGTTTGTAT-AAGAAAC
* * * ** * * * *
252825 ATGAGGCAAAAGTCATTCATTGGTAAGAAAAGTCCATTTATAATCACTTATGTCC-TCGAAAGCC
65 ATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT-ACCTTCAAAAGCC
* * * * **
252889 TTGTTACCTGC-TTTAAGTGGATTTATAA-TGTCT-TAAATGATTTTAAATTGAATTTCTCTACA
129 TTATTA-CT-CATTTAAATTGTTTTATAACT-T-TATAAATGATTTTAAATTGAATTT-T-T-TT
* * * * * * * * *
252951 TTCTTTTATTAAAATAG-TCATCATTTCATGTTTGCATTAAGAAATATGAAGTAAAAGCCAACCA
187 TTTTTTTGTTAAAACAGATCATAATTTGATGTTTGCA-TCAGAAACATGAAGCAAAAGCCATCCA
* * * * * * * * *
253015 TTTACAAGAAAAGTCTATTTATAGTCACTCATACCTTCAAAAGCCT-TATTAATCGCTTTAATTA
251 TTGATAAAAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG-CTATTTTAATCGCTTTAAGTG
* *
253079 GATTTATAACTTTTT-CATCAATT
315 GATTTATAACTTTTTAAAT-GATT
* * * * ** * * ** *
253102 TTAAATTTAATTCTTTTATATTTTTGGTTTGAATAGATCATCATTTTGTGTTTGCATGCATAGAT
1 TTAAATTGAATTTTTTTACATTTTTAGTTAAAACAGATCATAATTTCATGTTTGTAT--A-AGA-
* * * *
253167 AA-ATGTGAAGTAAAAGCCAACCATTGAGAAAAAAAGTCCATTTATAGTCACTCATACCTTCAAA
62 AACA--TGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAA
* * * * **
253231 GGCCTTATTACTCACTTTAAGTGGATTTATAACTTTATAAATGATTTTAAATTGAATTTTTTCAC
125 AGCCTTATTACTCA-TTTAAATTGTTTTATAACTTTATAAATGATTTTAAATTGAATTTTTT-TT
* * * * *
253296 ATTTTTGTTAAAACAGATGATCATTTGATGTTTGCATTAGGAAACATGAAGTAAAA-CCTATCCA
188 TTTTTTGTTAAAACAGATCATAATTTGATGTTTGCATCA-GAAACATGAAGCAAAAGCC-ATCCA
* * ** * * * * * *
253360 TTGACAAGAAAAGTGTATTTATAGTCACTCATACTTTTTGAAAGCCT-TGTTACTCGTTTTAAGT
251 TTGATAAAAAAAGTCCATTTATAGTCACTCATGC-CTTCGAAAG-CTATTTTAATCGCTTTAAGT
253424 GGATTTATAACTTTTTAAATGATT
314 GGATTTATAACTTTTTAAATGATT
* * * * * * * * ** *
253448 TCAAATTGAATTTTTTTTGCATTCTTGGTTGAAACATATCATAATTTGATCTTTACATTAGGAAA
1 TTAAATTGAA-TTTTTTTACATTTTTAGTTAAAACAGATCATAATTTCATGTTTGTA-TAAGAAA
* * * * * *
253513 CATTAAGCAAAAGCCATCCATTGAAAAGAAAAGTTCATTTATAGTCAATCACACCTTCATAAGCC
64 CATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAAGCC
* * * * * * ****
253578 TTGTTGCTCCCTTTAAATAGATTTATAAGTTTATAAATGATTTTAAATTGAA-TTTTTTACACTT
129 TTATTACT-CATTTAAATTGTTTTATAACTTTATAAATGATTTTAAATTGAATTTTTTTTTTTTT
**
253642 T-TT---AC--AT--TAA--TGA---TTGCAAT-AGGAAACATGAAGCAAAAGCCATCCATTGNN
193 TGTTAAAACAGATCATAATTTGATGTTTGC-ATCA-GAAACATGAAGCAAAAGCCATCCATTGAT
******** * * * * * *
253693 NNNNNNNNTCCATTTATAGTCACTCATACCTTCAAAACCCT-TATTATTCGCTTTAAGTGGATTA
256 AAAAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA-GCTATTTTAATCGCTTTAAGTGGATTT
*
253757 ATAACTTTATAAATGATT
320 ATAACTTTTTAAATGATT
* * * * * *
253775 TTAAATTAAATTTTTTTACATTTTTCA-TTCAAACAGATCATCATTTTATTTTTGCATTAAGAAA
1 TTAAATTGAATTTTTTTACATTTTT-AGTTAAAACAGATCATAATTTCATGTTTGTA-TAAGAAA
* * * * * **
253839 CATAAAGCAAAAGCCATCCATTGATAAGAAAAGTCTATTTATAGTCCCTCATGCCTT-TGAAGCC
64 CATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAAGCC
* * * * * *
253903 TTGTTA-TCCACTTTAAGTGGATTGATAACTTT-TTAATAGATTTTAAATTGAATTTTTTTATAT
129 TTATTACT-CA-TTTAAATTGTTTTATAACTTTATAAAT-GATTTTAAATTGAATTTTTTT-T-T
** * * ** * * * * * * * *
253966 TTTTCATTAAAACGGTTTTTCATTTGATCTTTGCACCAAGAAACATAAAGAAAAAGTCATCTACT
189 TTTTTGTTAAAACAGATCATAATTTGATGTTTGCATC-AGAAACATGAAGCAAAAGCCATCCATT
* ** * * * * * * *
254031 GACAAAAAAAGTTTATTTATAGTCACTCGTGCCTTCTGAAATCT-TGTTACTCACTTTGAGT-AA
253 GATAAAAAAAGTCCATTTATAGTCACTCATGCCTTC-GAAAGCTATTTTAATCGCTTTAAGTGGA
*
254094 TTTTATAACTTTTTAAATTATT
317 -TTTATAACTTTTTAAATGATT
* * * * ** * * *
254116 TTAGATTGAATTTTTTTACATTTTTGGTCAAAACAGGTTGTCATTTCATCTTT-TCATTAGGAAA
1 TTAAATTGAATTTTTTTACATTTTTAGTTAAAACAGATCATAATTTCATGTTTGT-A-TAAGAAA
* ** *
254180 CATGAAGCAAAAGCCATCCATTAACAAGAAAAGTCTGTTTATAGTCACTCATACCTTCAAAAGTC
64 CATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAAGCC
* * * *
254245 TTGTTACTCATTTTAAATAGATTTATAACTTTATAAATGATTTTAAATTGAATTTTTTTACATTT
129 TTATTACTCA-TTTAAATTGTTTTATAACTTTATAAATGATTTTAAATTGAATTTTTTT--TTTT
* * * * * * ** * *
254310 TTAGTTCAATCAGACCATAATTTGATATTTGTATTGGGAAACATGAAGCAAAAGCCAACCATTTA
191 TTTGTTAAAACAGATCATAATTTGATGTTTGCA-TCAGAAACATGAAGCAAAAGCCATCCATTGA
* * *
254375 -AAAAAAAGTCCATTTATAGTCATTCATGCATTCGAAAGTCCTA--TTAATCGCTTAAAGTGGAT
255 TAAAAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG--CTATTTTAATCGCTTTAAGTGGAT
* * *
254437 TTATTACTTTTT-CATCAATT
318 TTATAACTTTTTAAAT-GATT
* * * * * * * * *
254457 TTAAGTTGAATATTTTCACATTTTTGGCTCAAACAGATCATCATTTCATGTTT-TCATCAGAAAT
1 TTAAATTGAATTTTTTTACATTTTTAGTTAAAACAGATCATAATTTCATGTTTGT-ATAAGAAAC
* * * * * *
254521 ATGAAGCAAAAGTCATCCATTGATAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAATGCCT
65 ATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAAGCCT
** * * * * *
254586 CGTTACTCGCTTTAAGTAGTTTTATAGCTTTATAAATGACTTTT-AATTGAATTTTTTATATTTT
130 TATTACTC-ATTTAAATTGTTTTATAACTTTATAAATGA-TTTTAAATTGAATTTTTT-TTTTTT
* * * * * * **
254650 TGGTTAAAACATATCATCATTCGATGTTTGCAT-TGCCAATGTGAAGCAAAAGCCATCCATTGA-
192 TTGTTAAAACAGATCATAATTTGATGTTTGCATCAG-AAACATGAAGCAAAAGCCATCCATTGAT
* * * * * * * *
254713 CAAGAAAGTCTATTTATAGTCACTCATGTCTTCGAAAACCT-TGTTACTCGCTTTAAGTTGATTT
256 AAAAAAAGTCCATTTATAGTCACTCATGCCTTCG-AAAGCTATTTTAATCGCTTTAAGTGGATTT
254777 ATAACTTTTTAAATGATT
320 ATAACTTTTTAAATGATT
* * * * ** **
254795 TTACATTAAAATTTTTGTT-CATTTCTTA-TTAAAACATATCATAATTTCTTGTTCATACCCAGA
1 TTAAATT-GAATTTTT-TTACATTT-TTAGTTAAAACAGATCATAATTTCATGTTTGTA-TAAGA
** ** * * * * * *
254858 AATGTGAAGCAAAAATCATCCATTGACAAGAAAAGTTCATTTATATTCATTAATGCCTGCAAAAG
62 AACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAAG
* * * * *
254923 CC-TAGTTAGTCGCTTTAAA-TGATTTTGTAA-TCTTGTAAATGATTTTAAAAGTGAATTTTTCT
127 CCTTA-TTACTC-ATTTAAATTG-TTTTATAACT-TTATAAATGATTTT-AAATTGAATTTTT-T
** * * * * *
254985 CATTTTTTGTTAAAACAAATCATAATTTGATGTTTGCATTGAGAAACGTTAAGCAAAAGTCATCC
186 TTTTTTTTGTTAAAACAGATCATAATTTGATGTTTGCA-TCAGAAACATGAAGCAAAAGCCATCC
* * * * * * * * *
255050 ATTG-TCGAGAAAAGTCCTTTTATAGTCCCTAAAGCCTTTGAAAGCTATTTTACA-C-ATATTCA
250 ATTGAT-AAAAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCTATTTTA-ATCGCT-TTAA
**
255112 GTGGATTTATAACTTTACAAATGATT
312 GTGGATTTATAACTTTTTAAATGATT
** * * ** * * *
255138 TTAGTTTAAATTATTTTATGTTTTTAGTTAAAACAGATCATTATTTGATGTTTGTATCAAGAATC
1 TTAAATTGAATTTTTTTACATTTTTAGTTAAAACAGATCATAATTTCATGTTTGTAT-AAGAAAC
* * * * *
255203 ATGAGGCGAAAGCCATCAATTGACAA-AGAACGTCCATTTATAGTCACTCATGCCTAT-AAAAGC
65 ATGAAGCAAAAGCCATCCATTGACAAGA-AAAGTCCATTTATAGTCACTCATACCT-TCAAAAGC
* * * *
255266 C-TATTTACTCGCA-TCAAA-TGATTTTATAATTTTATAAATAATTTTAAATT-TATTTATTTTT
128 CTTA-TTACT--CATTTAAATTG-TTTTATAACTTTATAAATGATTTTAAATTGAATTT-TTTTT
* * * * *
255327 TATTTTTGGTTAAAATAGATCATAGTTTGTTGTTTGCATCAAGAAATGA-GAAGCGAAAA-CTAT
188 T-TTTTT-GTTAAAACAGATCATAATTTGATGTTTGCATC-AGAAA-CATGAAGC-AAAAGCCAT
* * * * * *
255390 CCATTGATAAGAAAAGTTCATTTATAATCACTCAAGCCTTCTAAAGCCTAATTTAATCGCTTTAA
248 CCATTGATAAAAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG-CTATTTTAATCGCTTTAA
* *
255455 GTGGTTTTATAAATTTTTAAATGATT
312 GTGGATTTATAACTTTTTAAATGATT
* * * * * * * * * *
255481 TTAAGTTGAA-TTTTTTATATTTTTGGTTAAAACGGGTTATTATTTCATCTTTGCATAGGGAAAC
1 TTAAATTGAATTTTTTTACATTTTTAGTTAAAACAGATCATAATTTCATGTTTGTATA-AGAAAC
* * * * * * *
255545 GTGAAGTAAAAACCATCCATTGATAAGAAAAGTCTATTTATAATCACTCATACCTTCGAAAGCCT
65 ATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAAGCCT
* * * * * *
255610 T-TGTACTCACTTGAACTTGATATATAAATTTAGAAATGATTTTAAATTGAATTTTTTTTTTTTT
130 TAT-TACTCA-TTTAAATTGTTTTATAACTTTATAAATGATTTTAAATTGAATTTTTTTTTTTTT
255674 TGCTTAAAACAGATCATAATTTGAT-TTGTGCATCAGCAAACATGAAGCAAAAGCCATCCATTGA
193 TG-TTAAAACAGATCATAATTTGATGTT-TGCATCAG-AAACATGAAGCAAAAGCCATCCATTGA
* * *
255738 TAAAAAAAGTCAATTTATAGTCAC-CTATGCCTTCGAAAGCTTTTTTAATTGCTTTAAGTGGATT
255 TAAAAAAAGTCCATTTATAGTCACTC-ATGCCTTCGAAAGCTATTTTAATCGCTTTAAGTGGATT
*
255802 TATAACTTTTTGAATGATT
319 TATAACTTTTTAAATGATT
* * * * * *
255821 GTAAATT-ATTTTTTTTTTAGATTTTTAGTTAAAAAATATCATAATTTGATGTTTGTATTAAGAA
1 TTAAATTGA--ATTTTTTTACATTTTTAGTTAAAACAGATCATAATTTCATGTTTGTA-TAAGAA
* * * * * * *
255885 ACCTAAAGTAAAAGTCATCCATTGACAAGAAAAATCCATTTATAGTCATTTATACCTTCAAAAG-
63 ACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAAGC
* * *
255949 CTTATTAACTCATTTCAAATTGCTTTATAACCTTGTAAATGATTTTAAATT
128 CTTATT-ACTCATTT-AAATTGTTTTATAACTTTATAAATGATTTTAAATT
256000 TGATGTTTGT
Statistics
Matches: 4643, Mismatches: 1066, Indels: 525
0.74 0.17 0.08
Matches are distributed among these distances:
324 7 0.00
325 41 0.01
326 98 0.02
327 51 0.01
328 50 0.01
329 6 0.00
331 3 0.00
332 2 0.00
333 2 0.00
334 1 0.00
335 2 0.00
336 2 0.00
337 6 0.00
338 105 0.02
339 360 0.08
340 764 0.16
341 1022 0.22
342 891 0.19
343 508 0.11
344 187 0.04
345 314 0.07
346 183 0.04
347 37 0.01
348 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (337 bp):
TTAAATTGAATTTTTTTACATTTTTAGTTAAAACAGATCATAATTTCATGTTTGTATAAGAAACA
TGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAAGCCTT
ATTACTCATTTAAATTGTTTTATAACTTTATAAATGATTTTAAATTGAATTTTTTTTTTTTTTGT
TAAAACAGATCATAATTTGATGTTTGCATCAGAAACATGAAGCAAAAGCCATCCATTGATAAAAA
AAGTCCATTTATAGTCACTCATGCCTTCGAAAGCTATTTTAATCGCTTTAAGTGGATTTATAACT
TTTTAAATGATT
Found at i:256037 original size:133 final size:133
Alignment explanation
Indices: 255863--256132 Score: 477
Period size: 133 Copynumber: 2.0 Consensus size: 133
255853 AAAATATCAT
255863 AATTTGATGTTTGTATTAAGAAACCTAAAGTAAAAGTCATCCATTGACAAGAAAAATCCATTTAT
1 AATTTGATGTTTGTATTAAGAAACCTAAAGTAAAAGTCATCCATTGACAAGAAAAATCCATTTAT
* * *
255928 AGTCATTTATACCTTCAAAAGCTTATTAACTCATTTCAAATTGCTTTATAACCTTGTAAATGATT
66 AGTCACTTATACCTTCAAAAGCTAATTAACTCATTTCAAATTGCTTTATAACCTTATAAATGATT
*
255993 TTA
131 TCA
*
255996 AATTTGATGTTTGTATTGAGAAACCTAAAGTAAAAGTCATCCATTGACAAGAAAAATCCATTTAT
1 AATTTGATGTTTGTATTAAGAAACCTAAAGTAAAAGTCATCCATTGACAAGAAAAATCCATTTAT
* *
256061 AGTCACTTATGCCTTCAAAAGCTAATTAACTCGTTTCAAATTGCTTTATAACCTTATAAATGATT
66 AGTCACTTATACCTTCAAAAGCTAATTAACTCATTTCAAATTGCTTTATAACCTTATAAATGATT
256126 TCA
131 TCA
256129 AATT
1 AATT
256133 GGTTTTTTTT
Statistics
Matches: 130, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
133 130 1.00
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (133 bp):
AATTTGATGTTTGTATTAAGAAACCTAAAGTAAAAGTCATCCATTGACAAGAAAAATCCATTTAT
AGTCACTTATACCTTCAAAAGCTAATTAACTCATTTCAAATTGCTTTATAACCTTATAAATGATT
TCA
Found at i:256830 original size:170 final size:171
Alignment explanation
Indices: 256317--257210 Score: 715
Period size: 171 Copynumber: 5.2 Consensus size: 171
256307 TTATTTATTC
** * * * * ** *
256317 TTAAAACAGATCATAATTCCATGTTTGTAT-TGAGAAACATGGAGCAAAAATTATCTACTG-TCA
1 TTAAAACAGATCATAATTTGATATTTGCATCAG-GAAACATGAAGCAAAAGCTATCTATTGAT-A
** * * *
256380 AGAAAAGTCCT-TTTATAGTTTCT-AAAGCCTTCAAAAGCCATT-TTA--CACGTATTGAGTGAA
64 AGAAAAGT-CTATTTATAGTCACTCATA-CCTTCAAAAGCC-TTGTTACTCAC-T-TTAAGTGGA
* * *
256440 TTTATAACTTTATAAATGATTTTAAATTAAATTATTTTATATTTTTAG
124 TTTATAACTTTATAAATGATTTTAAATTGAATTATTTTACATTTTTGG
* * * *
256488 TTAAAACAGATCCTAATTTGATATTTGCA-CTAGGAAACATGAAGCGAAACCTATCTATTGACAA
1 TTAAAACAGATCATAATTTGATATTTGCATC-AGGAAACATGAAGCAAAAGCTATCTATTGATAA
* * * * * * *
256552 GGAACA-TCTATTTATAGTCATTTATACCTTTAAAAG-CTTAATTACTCGCTTTAAGTGAATTTA
65 -GAAAAGTCTATTTATAGTCACTCATACCTTCAAAAGCCTT-GTTACTCACTTTAAGTGGATTTA
* * * * **
256615 TGACTTTATAAATGAATTTAAATTAAAGTACATTACATTTTTGG
128 TAACTTTATAAATGATTTTAAATTGAATTATTTTACATTTTTGG
* * ** *
256659 TTAAAACATATCATAATTTGATGTTTGCATCAAAAAATATGAAGCAAAAGCTATCTATTGATAA-
1 TTAAAACAGATCATAATTTGATATTTGCATCAGGAAACATGAAGCAAAAGCTATCTATTGATAAG
* * * * *
256723 CAAAGTCTATTTATAGTCACTTATACCTTCGAAAGCCTTGTTACTTACTTTAATTGGATTTATAA
66 AAAAGTCTATTTATAGTCACTCATACCTTCAAAAGCCTTGTTACTCACTTTAAGTGGATTTATAA
* * *
256788 TTTTATAAATGATTTTAAATTGAATTACTTTACATATTTGG
131 CTTTATAAATGATTTTAAATTGAATTATTTTACATTTTTGG
** * * * * * *
256829 TTAAAGTAGATCATAATTTGATGTTTGCATTAGGAAACGTGAAACAAAAGCCATCTGTTGATAAG
1 TTAAAACAGATCATAATTTGATATTTGCATCAGGAAACATGAAGCAAAAGCTATCTATTGATAAG
* * * * *
256894 AAAAGT-TCATTTATTGTCACACATGCCTTCAAAAGCCTTTTTACTCACATTAAGTGGATTTATA
66 AAAAGTCT-ATTTATAGTCACTCATACCTTCAAAAGCCTTGTTACTCACTTTAAGTGGATTTATA
* * ** *
256958 ACTTTGTAAATGATTTTAAATTGAATTTGTTTTATTTTTTTAG
130 ACTTTATAAATGATTTTAAATTGAA-TTATTTTACATTTTTGG
* * * ** * * * *
257001 TTAAAACAAATCATAATTTGATATTTGCATTATGAAATGTGAAGTAAAAGCTATCCATTGACAAA
1 TTAAAACAGATCATAATTTGATATTTGCATCAGGAAACATGAAGCAAAAGCTATCTATTGATAAG
* ** * *** * * *
257066 AAAAGTCCATTTAT-GCTTGCTCATGCCTTTGGAAGCCTTGTTATTCACTTCAATTGGA-TTATA
66 AAAAGTCTATTTATAG-TCACTCATACCTTCAAAAGCCTTGTTACTCACTTTAAGTGGATTTATA
** *
257129 ACTTT-TTCATCGATTTTAAATTGAATT-TTTTTCATTTTTGG
130 ACTTTATAAAT-GATTTTAAATTGAATTATTTTACATTTTTGG
* * * *
257170 TTAAAATATATCATAATTTGTTATTTGTATC-GAGAAACATG
1 TTAAAACAGATCATAATTTGATATTTGCATCAG-GAAACATG
257211 CTTTTGAAAG
Statistics
Matches: 582, Mismatches: 121, Indels: 42
0.78 0.16 0.06
Matches are distributed among these distances:
169 46 0.08
170 144 0.25
171 275 0.47
172 115 0.20
173 2 0.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (171 bp):
TTAAAACAGATCATAATTTGATATTTGCATCAGGAAACATGAAGCAAAAGCTATCTATTGATAAG
AAAAGTCTATTTATAGTCACTCATACCTTCAAAAGCCTTGTTACTCACTTTAAGTGGATTTATAA
CTTTATAAATGATTTTAAATTGAATTATTTTACATTTTTGG
Found at i:256865 original size:341 final size:343
Alignment explanation
Indices: 256439--257196 Score: 820
Period size: 341 Copynumber: 2.2 Consensus size: 343
256429 TATTGAGTGA
* * * * * *
256439 ATTTATAACTTTATAAATGATTTTAAATTAAATTATTTTATATTTTTAGTTAAAACAGATCCTAA
1 ATTTATAATTTTATAAATGATTTTAAATTGAATTATTTTACATTTTTGGTTAAAATAGATCATAA
* * *
256504 TTTGATATTTGCACTAGGAAACATGAAGCGAAA-CCTATCTATTGACAAGGAACA--TCTATTTA
66 TTTGATATTTGCACTAGGAAACATGAAACAAAAGCC-ATCTATTGACAA-GAAAAGTTC-ATTTA
*** * * * *
256566 TAGTCATTTATACCTTTAAAAG-CTTAATTACTCGCTTTAAGTGAATTTATGACTTTATAAATGA
128 TAGTCACACATACCTTCAAAAGCCTT-ATTACTCACATTAAGTGAATTTATAACTTTATAAATGA
* * *
256630 ATTTAAATT-AAAGTACATTACATTTTTGGTTAAAACATATCATAATTTGATGTTTGCATCAAAA
192 ATTTAAATTGAAAGTACATTACATTTTTAGTTAAAACAAATCATAATTTGATATTTGCATCAAAA
* * * * *
256694 AATATGAAGCAAAAGCTATCTATTGA-TAACAAAGTCTATTTATAG-TCACTTATACCTTCGAAA
257 AATATGAAGCAAAAGCTATCCATTGACAAAAAAAGTCCATTTAT-GCTCACTCATACCTTCGAAA
*
256757 GCCTTGTTACTT-ACTTTAATTGG
321 GCCTTGTTA-TTCACTTCAATTGG
* * *
256780 ATTTATAATTTTATAAATGATTTTAAATTGAATTACTTTACATATTTGGTTAAAGTAGATCATAA
1 ATTTATAATTTTATAAATGATTTTAAATTGAATTATTTTACATTTTTGGTTAAAATAGATCATAA
* * * * * *
256845 TTTGATGTTTGCATTAGGAAACGTGAAACAAAAGCCATCTGTTGATAAGAAAAGTTCATTTATTG
66 TTTGATATTTGCACTAGGAAACATGAAACAAAAGCCATCTATTGACAAGAAAAGTTCATTTATAG
* * * * *
256910 TCACACATGCCTTCAAAAGCCTTTTTACTCACATTAAGTGGATTTATAACTTTGTAAATGATTTT
131 TCACACATACCTTCAAAAGCCTTATTACTCACATTAAGTGAATTTATAACTTTATAAATGAATTT
** *** ** * ** *
256975 AAATTGAATTTGTTTTATTTTTTTAGTTAAAACAAATCATAATTTGATATTTGCATTATGAAATG
196 AAATTGAAAGTACATTACATTTTTAGTTAAAACAAATCATAATTTGATATTTGCATCAAAAAATA
* ** * * *
257040 TGAAGTAAAAGCTATCCATTGACAAAAAAAGTCCATTTATGCTTGCTCATGCCTTTGGAAGCCTT
261 TGAAGCAAAAGCTATCCATTGACAAAAAAAGTCCATTTATGCTCACTCATACCTTCGAAAGCCTT
257105 GTTATTCACTTCAATTGG
326 GTTATTCACTTCAATTGG
* * *
257123 A-TTATAACTTTT-T-CATCGATTTTAAATTGAATT-TTTTTCATTTTTGGTTAAAATATATCAT
1 ATTTATAA-TTTTATAAAT-GATTTTAAATTGAATTATTTTACATTTTTGGTTAAAATAGATCAT
*
257184 AATTTGTTATTTG
64 AATTTGATATTTG
257197 TATCGAGAAA
Statistics
Matches: 343, Mismatches: 64, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
340 4 0.01
341 191 0.56
342 98 0.29
343 50 0.15
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (343 bp):
ATTTATAATTTTATAAATGATTTTAAATTGAATTATTTTACATTTTTGGTTAAAATAGATCATAA
TTTGATATTTGCACTAGGAAACATGAAACAAAAGCCATCTATTGACAAGAAAAGTTCATTTATAG
TCACACATACCTTCAAAAGCCTTATTACTCACATTAAGTGAATTTATAACTTTATAAATGAATTT
AAATTGAAAGTACATTACATTTTTAGTTAAAACAAATCATAATTTGATATTTGCATCAAAAAATA
TGAAGCAAAAGCTATCCATTGACAAAAAAAGTCCATTTATGCTCACTCATACCTTCGAAAGCCTT
GTTATTCACTTCAATTGG
Found at i:257626 original size:170 final size:169
Alignment explanation
Indices: 257207--257798 Score: 570
Period size: 171 Copynumber: 3.5 Consensus size: 169
257197 TATCGAGAAA
* * * ** *
257207 CATGCTTTTGAAAGCCTTCTTTCTTGCTTTAAGTGGATTCATAGCTTTATAAATGATTTTAAATT
1 CATGCCTTTGAAAGCCTTGTTACTCACTTTAAGTGGATTTATAGCTTTATAAATGATTTTAAATT
* **
257272 GAATTGTTTTACA-TTTTTGTTTAAAAC-AGATCATCATTTCATGTTTGCA-ATAGGAACCGTGA
66 G-ATTATTTTACATTTTTTG-TTAAAACAAG-TCATCATTTCATGTTTGCATA-AGGAAATGTGA
* * * * * *
257334 AGCAAAAGCCAACCATTTATATGAAAAGTCCATCTATAGTTATT
127 AG-AAAAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACT
* * * * * * * * * **
257378 CATACTTTTGAAAGCCTTGTTAATCAATTGAACTAGATTTATAACTTTCTCCATGATTTTAAATT
1 CATGCCTTTGAAAGCCTTGTTACTCACTTTAAGTGGATTTATAGCTTTATAAATGATTTTAAATT
* * *
257443 GATTTTTTTTACATTTTTTGTTAAAACAAGCCATCATTTCCTGTTTGCATAAGGAAATGTGAAGA
66 GA-TTATTTTACATTTTTTGTTAAAACAAGTCATCATTTCATGTTTGCATAAGGAAATGTGAAGA
*
257508 AAAGGCCATCCATTGAGAAG-AAAGTCCATTTATAGTCACT
130 AAA-GCCATCCATTGATAAGAAAAGTCCATTTATAGTCACT
* *
257548 CATGCCTTTGAAAGCCTTGTTACTTACTTTAAGTGGATTTAT-GACTTTATAAATTATTTTAAAT
1 CATGCCTTTGAAAGCCTTGTTACTCACTTTAAGTGGATTTATAG-CTTTATAAATGATTTTAAAT
* * * * * * * * *
257612 TGTATTACTTTACATATTTGGTTAAAGCATA-TCATAATTTGATGGTTGCATTAGAAAATGTGAA
65 TG-ATTATTTTACATTTTTTGTTAAAACA-AGTCATCATTTCATGTTTGCATAAGGAAATGTGAA
** *
257676 -ACATAAGCCATCTGTGGATAAGAAAAGTCCATTTATAGTCACT
128 GA-A-AAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACT
* * * *
257719 CATGCCTTTGAATGCCTTGGTACTCGCTTTAAGTGGATTTATAGCTTTATAAATTATTTTAAATT
1 CATGCCTTTGAAAGCCTTGTTACTCACTTTAAGTGGATTTATAGCTTTATAAATGATTTTAAATT
*
257784 GAATT-TTTTATATTT
66 G-ATTATTTTACATTT
257799 ATGCCTTCGA
Statistics
Matches: 345, Mismatches: 64, Indels: 25
0.79 0.15 0.06
Matches are distributed among these distances:
169 1 0.00
170 140 0.41
171 194 0.56
172 10 0.03
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (169 bp):
CATGCCTTTGAAAGCCTTGTTACTCACTTTAAGTGGATTTATAGCTTTATAAATGATTTTAAATT
GATTATTTTACATTTTTTGTTAAAACAAGTCATCATTTCATGTTTGCATAAGGAAATGTGAAGAA
AAGCCATCCATTGATAAGAAAAGTCCATTTATAGTCACT
Found at i:257634 original size:463 final size:463
Alignment explanation
Indices: 256753--257652 Score: 1060
Period size: 463 Copynumber: 1.9 Consensus size: 463
256743 TTATACCTTC
* * * *
256753 GAAAGCCTTGTTACTTACTTTAATTGGATTTATAATTTTATAAATGATTTTAAATTGAATTACTT
1 GAAAGCCTTCTTACTTACTTTAAGTGGATTCATAACTTTATAAATGATTTTAAATTGAATTACTT
** * * *
256818 TACATATTTGGTTAAAGTAGATCATAATTTGATGTTTGCATTAGGAAACGTGAAACAAAAGCCAT
66 TACATATTTGGTTAAAACAGATCATAATTTCATGTTTGCAATAGGAAACGTGAAACAAAAGCCAA
** * * * * * * *
256883 CTGTTGATAAGAAAAGTTCATTTATTGTCACACATGCCTTCAAAAGCCTTTTTACTCACATTAAG
131 CCATTGATAAGAAAAGTCCATCTATAGTCACACATACCTTCAAAAGCCTTGTTAATCACATTAAC
* * * *
256948 TGGATTTATAACTTTGTAAATGATTTTAAATTGAATTTGTTTTATTTTTTTAGTTAAAACAAATC
196 TAGATTTATAACTTTCTAAATGATTTTAAATTGAATTTGTTTTAATTTTTTAGTTAAAACAAACC
* * * *
257013 ATAATTTGATATTTGCATTATGAAATGTGAAGTAAAAGCTATCCATTGACAAAAAAAGTCCATTT
261 ATAATTTCATATTTGCATAAGGAAATGTGAAGTAAAAGCCATCCATTGACAAAAAAAGTCCATTT
** * * **
257078 ATGCTTGCTCATGCCTTTGGAAGCCTTGTTATTCACTTCAATTGGATTATAACTTTTTCATCGAT
326 ATGCTCACTCATGCCTTTGAAAGCCTTGTTATTCACTTCAAGTGGATTATAACTTTTAAATCGAT
* * * *
257143 TTTAAATTGAATTTTTTTCATTTTTGGTTAAAATATATCATAATTTGTTATTTGTATCGAGAAAC
391 TTTAAATTGAATTCTTTACATATTTGGTTAAAACATATCATAATTTGTTATTTGTATCGAGAAAC
257208 ATGCTTTT
456 ATGCTTTT
* * * **
257216 GAAAGCCTTCTTTCTTGCTTTAAGTGGATTCATAGCTTTATAAATGATTTTAAATTGAATTGTTT
1 GAAAGCCTTCTTACTTACTTTAAGTGGATTCATAACTTTATAAATGATTTTAAATTGAATTACTT
* * * * *
257281 TACATTTTTGTTTAAAACAGATCATCATTTCATGTTTGCAATAGGAACCGTGAAGCAAAAGCCAA
66 TACATATTTGGTTAAAACAGATCATAATTTCATGTTTGCAATAGGAAACGTGAAACAAAAGCCAA
* * * ** * **
257346 CCATTTATATGAAAAGTCCATCTATAGTTATTCATACTTTTGAAAGCCTTGTTAATCA-ATTGAA
131 CCATTGATAAGAAAAGTCCATCTATAGTCACACATACCTTCAAAAGCCTTGTTAATCACATT-AA
** * *
257410 CTAGATTTATAACTTTCTCCATGATTTTAAATTG-ATTTTTTTTACATTTTTT-GTTAAAACAAG
195 CTAGATTTATAACTTTCTAAATGATTTTAAATTGAATTTGTTTTA-ATTTTTTAGTTAAAACAAA
* * * * *
257473 CCATCATTTCCTGTTTGCATAAGGAAATGTGAAG-AAAAGGCCATCCATTGA-GAAGAAAGTCCA
259 CCATAATTTCATATTTGCATAAGGAAATGTGAAGTAAAA-GCCATCCATTGACAAAAAAAGTCCA
* *
257536 TTTATAG-TCACTCATGCCTTTGAAAGCCTTGTTACTT-ACTTTAAGTGGATTTATGACTTTATA
323 TTTAT-GCTCACTCATGCCTTTGAAAGCCTTGTTA-TTCACTTCAAGTGGA-TTATAACTTT-TA
* * *
257599 AAT-TATTTTAAATTGTATTACTTTACATATTTGGTTAAAGCATATCATAATTTG
384 AATCGATTTTAAATTGAATT-CTTTACATATTTGGTTAAAACATATCATAATTTG
257653 ATGGTTGCAT
Statistics
Matches: 361, Mismatches: 68, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
461 53 0.15
462 86 0.24
463 222 0.61
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (463 bp):
GAAAGCCTTCTTACTTACTTTAAGTGGATTCATAACTTTATAAATGATTTTAAATTGAATTACTT
TACATATTTGGTTAAAACAGATCATAATTTCATGTTTGCAATAGGAAACGTGAAACAAAAGCCAA
CCATTGATAAGAAAAGTCCATCTATAGTCACACATACCTTCAAAAGCCTTGTTAATCACATTAAC
TAGATTTATAACTTTCTAAATGATTTTAAATTGAATTTGTTTTAATTTTTTAGTTAAAACAAACC
ATAATTTCATATTTGCATAAGGAAATGTGAAGTAAAAGCCATCCATTGACAAAAAAAGTCCATTT
ATGCTCACTCATGCCTTTGAAAGCCTTGTTATTCACTTCAAGTGGATTATAACTTTTAAATCGAT
TTTAAATTGAATTCTTTACATATTTGGTTAAAACATATCATAATTTGTTATTTGTATCGAGAAAC
ATGCTTTT
Found at i:258022 original size:251 final size:250
Alignment explanation
Indices: 257549--258032 Score: 530
Period size: 251 Copynumber: 1.9 Consensus size: 250
257539 ATAGTCACTC
* * * * * *
257549 ATGCCTTTGAAAGCCTTGTTACTTACTTTAAGTGGATTTATGACTTTATAAATTATTTTAAATTG
1 ATGCCTTCGAAAGCCTTGTTACTCACTTTAAATGGATTTATAACTTTATAAATGATTTTAAATTA
* *
257614 TATTACTTTACATATTTGGTTAAAGCATATCATAATTTGATGGTTGCATTAGAAAATGTGAAACA
66 AATTACTTTACATATTTGGTTAAAGCATATCATAATTTGATGGTTGCACTAGAAAATGTGAAACA
* * ** * *
257679 TAAGCCATCTGTGGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAATGCCTTGGTACTC
131 TAAACCATCTGTGGATAAGAAAAGTCCATTTATAGTCACTAATGCCTACGAAAGCCTAGGTACTC
* * *
257744 GCTTTAAGTGGATTTATAGCTTTATAAATTATTTTAAATTGAATTTTTTATATTT
196 ACTTTAAATGGATTTATAGCTTTATAAATGATTTTAAATTGAATTTTTTATATTT
* *
257799 ATGCCTTCGAAAGCCTTGTTACTCGCTTTAAAAT-GATTTATAACTTTTTAAATGATTTTAAATT
1 ATGCCTTCGAAAGCCTTGTTACTCACTTT-AAATGGATTTATAACTTTATAAATGATTTTAAATT
* * * ** * *
257863 AAAATTATTTTTCATATTTTGTTGAAA-CATATCATAATTTTTTGTTTGTACCTAG-AAATGTGA
65 -AAATTACTTTACATATTTGGTT-AAAGCATATCATAATTTGATGGTTGCA-CTAGAAAATGTGA
* * * *
257926 AGCGA-AAACCATC-GATTGATAAGAAAAGTTCATTTATAGTCATTAATGCCTACGAAAGCCTAG
127 AAC-ATAAACCATCTG-TGGATAAGAAAAGTCCATTTATAGTCACTAATGCCTACGAAAGCCTAG
* ** * * * *
257989 TTGGTTACTTTAAATGGTTTTGTA-ATCTTATAAATGATTTTAAA
190 GTACTCACTTTAAATGGATTTATAGCT-TTATAAATGATTTTAAA
258033 AGTTAATGTT
Statistics
Matches: 190, Mismatches: 37, Indels: 13
0.79 0.15 0.05
Matches are distributed among these distances:
250 55 0.29
251 128 0.67
252 7 0.04
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.42
Consensus pattern (250 bp):
ATGCCTTCGAAAGCCTTGTTACTCACTTTAAATGGATTTATAACTTTATAAATGATTTTAAATTA
AATTACTTTACATATTTGGTTAAAGCATATCATAATTTGATGGTTGCACTAGAAAATGTGAAACA
TAAACCATCTGTGGATAAGAAAAGTCCATTTATAGTCACTAATGCCTACGAAAGCCTAGGTACTC
ACTTTAAATGGATTTATAGCTTTATAAATGATTTTAAATTGAATTTTTTATATTT
Found at i:258228 original size:170 final size:166
Alignment explanation
Indices: 257923--259730 Score: 864
Period size: 171 Copynumber: 10.6 Consensus size: 166
257913 CCTAGAAATG
* * * *
257923 TGAAGCGAAAACCATCGATTGATAAGAAAAGTTCATTTATAGTCA-TTAATGCCTACGAAAGCCT
1 TGAAGC-AAAACCATCCATTGACAAGAAAAG-TCATTTATAGTCACTCAA-GCCTTCGAAAGCCT
* **** * * * * * *
257987 AGTTGGTTACTTTAAATGGTTTTGTAA-TCTTATAAATGATTTTAAAAGTT-AATGTTTCT-CAC
63 -TTTACACAC-TTCAATGGATTTATAACT-TTATAAATGATTTT-AAA-TTGAAT-TTTTTATAT
* *
258049 TTTTGGTTAAAATAAATCATAATTTAATGTTTGCATTGAGAAACA
122 TTTTGGTTAAAACAGATCATAATTTAATGTTTGCATTGAGAAACA
* * * * * * *
258094 TCAAGCAAAATCATCCATTGTCAAGAAAAGTCGTTTTATAGTCGCTGAAGCCTTTGAAAGCCATT
1 TGAAGCAAAACCATCCATTGACAAGAAAAGTC-ATTTATAGTCACTCAAGCCTTCGAAAGCC-TT
** *
258159 TTACACACATTCAATGGATTTATAACTTTATAAATGATTTTAGTTTGAATTATTTTATGTTTTTG
64 TTACACAC-TTCAATGGATTTATAACTTTATAAATGATTTTAAATTGAATT-TTTTATATTTTTG
* * * * ** ** **
258224 GTTAAAACAAATCATTATTTGACGTTTGTGTCAAGAATTA
127 GTTAAAACAGATCATAATTTAATGTTTGCATTGAGAAACA
* * *
258264 TGAAGCGAAAGCCATCCATTGACAAGGAACA-TCCATTTATAGTCACTCATA-CCTTCAAAAGCC
1 TGAAGC-AAAACCATCCATTGACAA-GAAAAGT-CATTTATAGTCACTCA-AGCCTTCGAAAG-C
* * * * * *
258327 CATTTACTCACATCAAATGGTTTTATAA-TCTTATAAATGATTTCATATTG-ATTTTTT-TATTT
61 CTTTTACACACTTC-AATGGATTTATAACT-TTATAAATGATTTTAAATTGAATTTTTTATATTT
** * * * ** *
258389 TTAATTAAAATAGATCATAGTTTATTGTTTGCATCAAGAAATGA
124 TTGGTTAAAACAGATCATAATTTAATGTTTGCATTGAGAAA-CA
* * * * * *
258433 -GAAGTGAAAGCTATCCATTGACAAGAAAAGTTCATTTATAATCACTCATGCCTTTTG-AAGCCT
1 TGAAG-CAAAACCATCCATTGACAAGAAAAG-TCATTTATAGTCACTCAAGCC-TTCGAAAGCCT
** * * *
258496 AATTTA-ATCGTTTTAAGTGGTTTTATAACTTTTTAAATGATTTTAAATTGAATTTTTTTATATT
63 --TTTACA-CACTTCAA-TGGATTTATAACTTTATAAATGATTTTAAATTGAA-TTTTTTATATT
** * * * * * * *
258560 TTTCATTAAAAGAGGTCATCATTTCATCTTTGTATAG-GAAAACA
123 TTTGGTTAAAACAGATCATAATTTAATGTTTGCATTGAG-AAACA
* * * * * * * * *
258604 TGAAGCAAAAAGCATCCACTAATAAGAAAGGTCCATTTATAATCTCTCATGTCTTCGAAAGCCTT
1 TGAAGC-AAAACCATCCATTGACAAGAAAAGT-CATTTATAGTCACTCAAGCCTTCGAAAGCCTT
* * * * * * * *
258669 CGTACTCATTTGAACTGGATATATAATTTTATAAATGATTTTAAATTAAATTTTTTTTATGTTTT
64 -TTACACACTTCAA-TGGATTTATAACTTTATAAATGATTTTAAATTGAA--TTTTTTATATTTT
* * * * * *
258734 TGGTTAAAACAGATTATAATTTTATATTTACATCGGGAAACA
125 TGGTTAAAACAGATCATAATTTAATGTTTGCATTGAGAAACA
* * * * * * *
258776 TAAAGCAGAAGCCATTCATTGAAAAAAAAAGTTAATTTATAGTCCAGTCATTTA-CCTTCGAAAG
1 TGAAGCA-AAACCATCCATTGACAAGAAAAG-TCATTTATAGT-CACTCA---AGCCTTCGAAAG
* * * * * * *
258840 CCTTTTTACTCACTTTAAGTGGATTTGTAACTTTTTAAGTGATTTCAAATTGAATTTTTTTTAGA
60 CC-TTTTACACACTTCAA-TGGATTTATAACTTTATAAATGATTTTAAATTGAA--TTTTTTATA
* * * *
258905 TTTTTGGTTAAAATATATTATAATTTAATGTTTGCATTGAGAAACC
121 TTTTTGGTTAAAACAGATCATAATTTAATGTTTGCATTGAGAAACA
* * * * * * *
258951 TGAAGCGAAAGCCATCCATTGACAAGAAAAATCTATTTATAATCGCTCATGCCTTCAAAAGCCTA
1 TGAAGC-AAAACCATCCATTGACAAGAAAAGTC-ATTTATAGTCACTCAAGCCTTCGAAAGCCTT
* * * * * * * * *
259016 TTA-ACTTGCTTCAAATTGCTTTATAACCTTATAAATAATTTCAAATTTAATTTTTTTTCTTTTT
64 TTACAC--ACTTC-AATGGATTTATAACTTTATAAATGATTTTAAATTGAATTTTTTAT-ATTTT
* * * * *
259080 TAGTTAAAATAGGTCATAATTTATTGTTTGCATT-AGGAAACG
125 TGGTTAAAACAGATCATAATTTAATGTTTGCATTGA-GAAACA
* * * * * * * * *
259122 TGAGGCAAAATCCATTCATTAATAAGAAACGTCCATGTATAGTCTCT-AATGCCTTTGAAAGACT
1 TGAAGCAAAA-CCATCCATTGACAAGAAAAGT-CATTTATAGTCACTCAA-GCCTTCGAAAGCCT
* * * * * * *
259186 AGTTAGACGCTTTAA-GTGATTTTATAA-TCTCATAAATGATCTTAAAATTGAATTTTTTTTATT
63 -TTTACACACTTCAATG-GA-TTTATAACT-TTATAAATGAT-TTTAAATTGAATTTTTTATATT
** * * * **
259249 TTTTCTTAAAACAGATCATAATTTCATATTTACATTGAGAAATG
123 TTTGGTTAAAACAGATCATAATTTAATGTTTGCATTGAGAAACA
** * * * * * *
259293 TGAAGCAAAAATTATCTATTGTCAAGAAAAGTCTTTTTATAGTTACTAAAGCCTTCAAAAGCCGT
1 TGAAGC-AAAACCATCCATTGACAAGAAAAGTC-ATTTATAGTCACTCAAGCCTTCGAAAGCC-T
* * * *
259358 TTTACACACATT-AAGTGGATTTATAACTCTATAAATGATTTTAAATTAAATTATCTTACATTTT
63 TTTACACAC-TTCAA-TGGATTTATAACTTTATAAATGATTTTAAATTGAATT-TTTTATATTTT
* * * *
259422 T-TTTAAAACAGATCATAGTTTGACA-GTTACGC--TAAGAAACA
125 TGGTTAAAACAGATCATAATTT-A-ATGTT-TGCATTGAGAAACA
* * * * * *
259463 TGAAGTGAAAGCCATCCATTGACAAGAAACA-TCTATTTATTGTCACTTATGCCTTCGCAAG-CT
1 TGAAG-CAAAACCATCCATTGACAAGAAA-AGTC-ATTTATAGTCACTCAAGCCTTCGAAAGCCT
* * * ** *
259526 TAATTACTCACTTTAAATGGATTTATAACTTTATAAATGAATTTAAATTGAATTACATTACATTT
63 T--TTACACAC-TTCAATGGATTTATAACTTTATAAATGATTTTAAATTGAATT-TTTTATATTT
* * * **
259591 TTGGTTCAAACAAATCATAATTTGATGTTTGCATCAAGAAACA
124 TTGGTTAAAACAGATCATAATTTAATGTTTGCATTGAGAAACA
** * * *
259634 TGAAGCAAAAGCCATTTATTGACAACAAAA-TCTATTTATAGTCACTCATA-CTTTCGAAAGCTT
1 TGAAGCAAAA-CCATCCATTGACAAGAAAAGTC-ATTTATAGTCACTCA-AGCCTTCGAAAGCCT
*** * *
259697 TGTTACTTGCTTTAACTGGATTTATAATTTTATA
63 T-TTACACACTTCAA-TGGATTTATAACTTTATA
259731 TTTGCATTGG
Statistics
Matches: 1244, Mismatches: 306, Indels: 175
0.72 0.18 0.10
Matches are distributed among these distances:
167 6 0.00
168 81 0.07
169 59 0.05
170 324 0.26
171 394 0.32
172 233 0.19
173 11 0.01
174 5 0.00
175 128 0.10
176 3 0.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.39
Consensus pattern (166 bp):
TGAAGCAAAACCATCCATTGACAAGAAAAGTCATTTATAGTCACTCAAGCCTTCGAAAGCCTTTT
ACACACTTCAATGGATTTATAACTTTATAAATGATTTTAAATTGAATTTTTTATATTTTTGGTTA
AAACAGATCATAATTTAATGTTTGCATTGAGAAACA
Found at i:258965 original size:175 final size:176
Alignment explanation
Indices: 258656--258981 Score: 410
Period size: 175 Copynumber: 1.9 Consensus size: 176
258646 TCTCTCATGT
*
258656 CTTCGAAAGCCTTCGTACTCATTTGAACTGGATATATAATTTTATAAATGATTTTAAATTAAATT
1 CTTCGAAAGCCTTCGTACTCATTTGAACTGGATATATAATTTTATAAATGATTTCAAATTAAATT
* *
258721 TTTTTTATGTTTTTGGTTAAAACAGATTATAATTTTATATTTACATCGGGAAACATAAAGCAGAA
66 TTTTTTATGTTTTTGGTTAAAACAGATTATAATTTAATATTTACATCGAGAAACATAAAGCAGAA
*
258786 GCCATTCATTGA-AAAAAAAAGTTAATTTATAGTCCAGTCATTTAC
131 GCCATCCATTGACAAAAAAAAGTTAATTTATAGTCCAGTCATTTAC
** * * * * *
258831 CTTCGAAAGCCTTTTTACTCACTTT-AAGTGGATTTGTAACTTTT-TAAGTGATTTCAAATTGAA
1 CTTCGAAAGCCTTCGTACTCA-TTTGAACTGGATATATAA-TTTTATAAATGATTTCAAATTAAA
* * * * * * *
258894 TTTTTTTTA-GATTTTTGGTTAAAATATATTATAATTTAATGTTTGCATTGAGAAACCTGAAGC-
64 TTTTTTTTATG-TTTTTGGTTAAAACAGATTATAATTTAATATTTACATCGAGAAACATAAAGCA
*
258957 GAAAGCCATCCATTGACAAGAAAAA
128 G-AAGCCATCCATTGACAAAAAAAA
258982 TCTATTTATA
Statistics
Matches: 127, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
174 2 0.02
175 111 0.87
176 14 0.11
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.40
Consensus pattern (176 bp):
CTTCGAAAGCCTTCGTACTCATTTGAACTGGATATATAATTTTATAAATGATTTCAAATTAAATT
TTTTTTATGTTTTTGGTTAAAACAGATTATAATTTAATATTTACATCGAGAAACATAAAGCAGAA
GCCATCCATTGACAAAAAAAAGTTAATTTATAGTCCAGTCATTTAC
Found at i:259768 original size:113 final size:114
Alignment explanation
Indices: 259628--259844 Score: 280
Period size: 114 Copynumber: 1.9 Consensus size: 114
259618 TTTGCATCAA
** *
259628 GAAACATGAAGCAAAAGCCATTTATTGACAACAAAA-TCTATTTA-TAGTCACTCATACTTTCGA
1 GAAACATGAAGCAAAAGCCATCCATTGACAACAAAAGTCTATTTACTA-TCACTCATACCTTC-A
* * *
259691 -AAG-CTTTGTTACTTGCTTTAACTGGATTTATAATTTTATATTTGCATTGG
64 CAAGTC-TAGTTACTTGCTTTAACTGGATTTAAAACTTTATATTTGCATTGG
* * *
259741 GAAATATGAAGTAAAAGCCATCCATTGACAACAAAAGTCTATTTACTATCACTCATGCCTTCACA
1 GAAACATGAAGCAAAAGCCATCCATTGACAACAAAAGTCTATTTACTATCACTCATACCTTCACA
* *
259806 AGTCTAGTTACTTGCTTTAAGTTGATTTAAAACTTTATA
66 AGTCTAGTTACTTGCTTTAACTGGATTTAAAACTTTATA
259845 AATGATTTTA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
113 33 0.37
114 53 0.60
115 3 0.03
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.36
Consensus pattern (114 bp):
GAAACATGAAGCAAAAGCCATCCATTGACAACAAAAGTCTATTTACTATCACTCATACCTTCACA
AGTCTAGTTACTTGCTTTAACTGGATTTAAAACTTTATATTTGCATTGG
Found at i:260003 original size:284 final size:284
Alignment explanation
Indices: 259457--260014 Score: 678
Period size: 284 Copynumber: 2.0 Consensus size: 284
259447 GTTACGCTAA
* * * * * *
259457 GAAACATGAAGTGAAAGCCATCCATTGACAAGAAACATCTATTTATTGTCACTTATGCCTTCGCA
1 GAAACATGAAGTAAAAGCCATCCATTGACAACAAACATCTATTTACTATCACTCATGCCTTCACA
*
259522 AGCTTAATTACTCACTTTAAATGGATTTATAACTTTATAAATGAATTTAAATTGAATTACATTAC
66 AGCTTAATTACTCACTTTAAATGGATTTAAAACTTTATAAATGAATTTAAATTGAATTACATTAC
* * ** **
259587 ATTTTTGGTTCAAACAAATCATAATTTGATGTTTGCATCAAGAAACATGAAGCAAAAGCCATTTA
131 ATTTTTGGCTCAAACAAATCATAATTTGATGTTTACATCAAGAAACACAAAGCAAAAGCCATCCA
* * *
259652 TTGACAACAAAATCTATTTATAGTCACTCATACTTTCGAAAGCTTTGTTACTTGCTTTAACTGGA
196 TTGACAACAAAATCTATTTATAGTCACTCATACTTTCGAAAGCCTTATTACTTGCTATAACTGGA
*
259717 TTTATAATTTTATATTTGCATTGG
261 TTTATAACTTTATATTTGCATTGG
*
259741 GAAATATGAAGTAAAAGCCATCCATTGACAACAAA-AGTCTATTTACTATCACTCATGCCTTCAC
1 GAAACATGAAGTAAAAGCCATCCATTGACAACAAACA-TCTATTTACTATCACTCATGCCTTCAC
* ** * * * *
259805 AAG-TCTAGTTACTTGCTTTAAGTTGATTTAAAACTTTATAAATGATTTTAAATTGAATTACTTT
65 AAGCT-TAATTACTCACTTTAAATGGATTTAAAACTTTATAAATGAATTTAAATTGAATTACATT
** * * * * *
259869 ACATTTTTGGCT-AACACAGGTCATCATTTTATGTTTACATTAGGAAACGCAAAGCAAAAGCCAT
129 ACATTTTTGGCTCAA-ACAAATCATAATTTGATGTTTACATCAAGAAACACAAAGCAAAAGCCAT
* * * * *
259933 CCATTGATAATAAAGTCCT-TTTATAG-CTACTCATGCCTTT-GAAAGCCTTATTATTTGCTATA
193 CCATTGACAACAAAAT-CTATTTATAGTC-ACTCAT-ACTTTCGAAAGCCTTATTACTTGCTATA
*
259995 AGTGGATTTATAACTTTATA
255 ACTGGATTTATAACTTTATA
260015 CATTATTTTA
Statistics
Matches: 230, Mismatches: 38, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
283 5 0.02
284 219 0.95
285 6 0.03
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (284 bp):
GAAACATGAAGTAAAAGCCATCCATTGACAACAAACATCTATTTACTATCACTCATGCCTTCACA
AGCTTAATTACTCACTTTAAATGGATTTAAAACTTTATAAATGAATTTAAATTGAATTACATTAC
ATTTTTGGCTCAAACAAATCATAATTTGATGTTTACATCAAGAAACACAAAGCAAAAGCCATCCA
TTGACAACAAAATCTATTTATAGTCACTCATACTTTCGAAAGCCTTATTACTTGCTATAACTGGA
TTTATAACTTTATATTTGCATTGG
Found at i:260025 original size:170 final size:170
Alignment explanation
Indices: 259720--260123 Score: 408
Period size: 170 Copynumber: 2.4 Consensus size: 170
259710 AACTGGATTT
* * * * *
259720 ATAATTTTATATTTGCATTGGGAAATATGAAGTAAAAGCCATCCATTGACAACAAAAGTCTATTT
1 ATAATTTGATATTTACATTGGAAAACA-GAAGCAAAAGCCATCCATTGACAACAAAAGTCTATTT
* * * *
259785 ACTATCACTCATGCCTTCACAAGTCTAGTTACTTGCTTTAAGTTGATTTAAAACTTTATAAATGA
65 ACTAGCACTCATGCCTTCACAAGCCTAGTTACTTGCTATAAGTGGATTTAAAACTTTATAAATGA
* * * **
259850 TTTTAAATTGAATTACTTTACATTTTTGGCTAACA-CAGGTC
130 TTTTAAACTGAATTACTTTACATATTTGACTAA-AGCAAATC
* * * * * *
259891 ATCATTTTATGTTTACATTAGGAAACGCA-AAGCAAAAGCCATCCATTGATAA-TAAAGTCCT-T
1 ATAATTTGATATTTACATT-GGAAA-ACAGAAGCAAAAGCCATCCATTGACAACAAAAGT-CTAT
* * *
259953 TTA-TAGCTACTCATGCCTTTGA-AAGCCTTA-TTATTTGCTATAAGTGGATTTATAACTTTATA
63 TTACTAGC-ACTCATGCC-TTCACAAGCC-TAGTTACTTGCTATAAGTGGATTTAAAACTTTATA
* * * *
260015 CATTATTTTAAACTGACTTACTTTACATATTTGATTAAAGCAAATC
125 AATGATTTTAAACTGAATTACTTTACATATTTGACTAAAGCAAATC
** *
260061 ATAATTTGATATTTACATTGGAAAACATGAAGCAAAAGCCATCCATTGTTAAGAAAAGTCTAT
1 ATAATTTGATATTTACATTGGAAAACA-GAAGCAAAAGCCATCCATTGACAACAAAAGTCTAT
260124 GTATTATTAC
Statistics
Matches: 191, Mismatches: 31, Indels: 22
0.78 0.13 0.09
Matches are distributed among these distances:
168 2 0.01
169 9 0.05
170 125 0.65
171 50 0.26
172 4 0.02
173 1 0.01
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (170 bp):
ATAATTTGATATTTACATTGGAAAACAGAAGCAAAAGCCATCCATTGACAACAAAAGTCTATTTA
CTAGCACTCATGCCTTCACAAGCCTAGTTACTTGCTATAAGTGGATTTAAAACTTTATAAATGAT
TTTAAACTGAATTACTTTACATATTTGACTAAAGCAAATC
Found at i:260345 original size:341 final size:340
Alignment explanation
Indices: 259720--260349 Score: 746
Period size: 341 Copynumber: 1.8 Consensus size: 340
259710 AACTGGATTT
* * * * * *
259720 ATAATTTTATATTTGCATTGGGAAATATGAAGTAAAAGCCATCCATTGACAACAAAAGTCTATTT
1 ATAATTTGATATTTACATTGGAAAACATGAAGCAAAAGCCATCCATTGACAACAAAAGTCTATGT
* * * * * *
259785 ACTATCACTCATGCCTTCACAAGTCTAGTTACTTGCTTTAAGTTGATTTAAAACTTTATAAATGA
66 ACTATCACTCATGCCTTCAAAAGCCTAGTTACTTACATTAAGTAGATTT-AAACGTTATAAATGA
* * * ** * * *
259850 TTTTAAATTGAATTACTTTACATTTTTGGCTAACACAGGTCATCATTTTATGTTTACATTAGGAA
130 CTTTAAATTGAATTACTTTACATTTTTGGCTAAAAAAAATCATAATTTGATGTTTACATTACGAA
* * *
259915 ACGCAAAGCAAAAGCCATCCATTGATAATAAAGTCCTTTTATAGCTACTCATGCCTTTGAAAGCC
195 ACGCAAAGCAAAAGCCATCCATTGATAAAAAAGTCCATTTATAGCTACTCATGCCTTCGAAAGCC
**
259980 TTATTATTTGCTATAAGTGGATTTATAACTTTATACATTATTTTAAACTGACTTACTTTACATAT
260 TTATTATTCACTATAAGTGGATTTATAACTTTATACATTATTTTAAACTGACTTACTTTACATAT
260045 TTGATTAAAGCAAATC
325 TTGATTAAAGCAAATC
** *
260061 ATAATTTGATATTTACATTGGAAAACATGAAGCAAAAGCCATCCATTGTTAAGAAAAGTCTATGT
1 ATAATTTGATATTTACATTGGAAAACATGAAGCAAAAGCCATCCATTGACAACAAAAGTCTATGT
* * * * ** *
260126 ATTATTACTTATGCCTTTAAAAGCCTTTTTACTTACATTAAGTAGA-TT-AACGTTGTAAATGAC
66 ACTATCACTCATGCCTTCAAAAGCCTAGTTACTTACATTAAGTAGATTTAAACGTTATAAATGAC
** * * *
260189 TTTAAATTGAATTTTTTTTTACTTTTTTGGTTAAAAAAAATCATAATTTGATGTTTGCATTACGA
131 TTTAAATTGAA--TTACTTTACATTTTTGGCTAAAAAAAATCATAATTTGATGTTTACATTACGA
* ** * * *
260254 AAC-CTGAAGTGAAAGCTATCGATTGATAAAAAAAGTTCATTTATA-CTCACTCATGCCTTCGAA
194 AACGC-AAAGCAAAAGCCATCCATTGAT-AAAAAAGTCCATTTATAGCT-ACTCATGCCTTCGAA
* *
260317 AGCCTTGTTATTCACTTTAAGTGGATTTATAAC
256 AGCCTTATTATTCACTATAAGTGGATTTATAAC
260350 ATTTTCATCA
Statistics
Matches: 236, Mismatches: 48, Indels: 10
0.80 0.16 0.03
Matches are distributed among these distances:
338 23 0.10
339 1 0.00
340 64 0.27
341 148 0.63
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.38
Consensus pattern (340 bp):
ATAATTTGATATTTACATTGGAAAACATGAAGCAAAAGCCATCCATTGACAACAAAAGTCTATGT
ACTATCACTCATGCCTTCAAAAGCCTAGTTACTTACATTAAGTAGATTTAAACGTTATAAATGAC
TTTAAATTGAATTACTTTACATTTTTGGCTAAAAAAAATCATAATTTGATGTTTACATTACGAAA
CGCAAAGCAAAAGCCATCCATTGATAAAAAAGTCCATTTATAGCTACTCATGCCTTCGAAAGCCT
TATTATTCACTATAAGTGGATTTATAACTTTATACATTATTTTAAACTGACTTACTTTACATATT
TGATTAAAGCAAATC
Found at i:260575 original size:117 final size:120
Alignment explanation
Indices: 260314--260612 Score: 376
Period size: 117 Copynumber: 2.5 Consensus size: 120
260304 TCATGCCTTC
* * ***
260314 GAAAGCCTTGTTATTCACTTTAAGTGGATTTATAACATTTTCATCAATTTTAAATTGAATTTTTT
1 GAAAGCCTTCTTATTCACTTTAAGTGGATTTATAACATTTTAATCAATTTTAAA-TGAATAACTT
* *
260379 TTCGTTTTTGGTTAAAATAGATCATAATTTATTGTTTGTATTGAGAAACATGCTTTT
65 TTC-TTTTTGGTTAAAATAGATCATAATTTATTGTTTGTACTGAGAAACATACTTTT
*
260436 GAAAGCCTTGTTATTCACTTTAAGTGGATTTATAACATTTTAATCAATTTTAAAT-AA-AACTTT
1 GAAAGCCTTCTTATTCACTTTAAGTGGATTTATAACATTTTAATCAATTTTAAATGAATAACTTT
* * *
260499 T-TTTTTGGTTAAAATATATTATAATTTGTTGTTTGTACTGAGAAACATACTTTT
66 TCTTTTTGGTTAAAATAGATCATAATTTATTGTTTGTACTGAGAAACATACTTTT
** *
260553 GAAAGCCTTCTT-TCTTGCTTTAAGTGGATTTATAGC-TTTATAAAT-AATTTTAAATTGAAT
1 GAAAGCCTTCTTAT-TCACTTTAAGTGGATTTATAACATTT-T-AATCAATTTTAAA-TGAAT
260613 TGTTTTATAT
Statistics
Matches: 158, Mismatches: 13, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
116 4 0.03
117 88 0.56
118 4 0.03
119 6 0.04
120 2 0.01
121 1 0.01
122 53 0.34
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.47
Consensus pattern (120 bp):
GAAAGCCTTCTTATTCACTTTAAGTGGATTTATAACATTTTAATCAATTTTAAATGAATAACTTT
TCTTTTTGGTTAAAATAGATCATAATTTATTGTTTGTACTGAGAAACATACTTTT
Found at i:261454 original size:171 final size:170
Alignment explanation
Indices: 260553--262924 Score: 1701
Period size: 171 Copynumber: 13.9 Consensus size: 170
260543 ACATACTTTT
* * * **
260553 GAAAGCCTTCTTTCTTGCTTTAAGTGGATTTATAGCTTTATAAATAATTTTAAATTGAATTGTTT
1 GAAAGCCTTGTTACTTGCTTTAAGTGGATTTATAACTTTATAAATAATTTTAAATTGAATTACTT
* ** * * * *
260618 TATATTTTTATTTAAAACAGATCATTATTTCATGTTTGCAT-TGAGAATCGA-GAAGCAAAAGCC
66 TACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATCAGAAAAT--ATGAAGCAAAAGCC
* * * *
260681 AACCATTTACAAGAAAAGTCCATTTATAGTCATTCATACCTTC
129 ATCCATTGACAA-AAAAGTCCATTTATAGTCACTCATGCCTTC
* *** * * * **
260724 GAAAGCCTTGTTAATCAATTTAAGTGGATTTATAACTTTCTCAATGATTTTAAATTGAATTTTTT
1 GAAAGCCTTGTTACTTGCTTTAAGTGGATTTATAACTTTATAAATAATTTTAAATTGAATTACTT
* ** * ** * * * * * ** * *
260789 TATATTTTTTATTAAAATAGGCCATCATTTCATGTTTGTATAAGGAAACGTGAAACAAATGCCAT
66 TACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATCAGAAAATATGAAGCAAAAGCCAT
* * * ** *
260854 CCATTGATAAAAAAGTCCATATATA-TCTCTCATATCTTT
131 CCATTGACAAAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * * * *
260893 GAAAGCCTTGTTAGTCGCTTTAAGAT-GACTTATAACTTTTTAAATGATTTTCAATTGAATT--T
1 GAAAGCCTTGTTACTTGCTTTAAG-TGGATTTATAACTTTATAAATAATTTTAAATTGAATTACT
* ** * * * * *
260955 TT-TATTTTTTATTAAAACATATCATAATTT-ATTATTTGTACCTAG-AAATGTGAAGCGAAAA-
65 TTACATTTTTGGTTAAAACAGATCATAATTTGA-TGTTTGCATC-AGAAAATATGAAGC-AAAAG
* * * * * *
261016 CTATCCATTGATAAGAAA-TGCCTATTTATAGTCATTAATGCCTAC
127 CCATCCATTGACAAAAAAGT-CC-ATTTATAGTCACTCATGCCTTC
* ** ** * * * * * *
261061 GAAAGCCTAGTTGGTCACTTTAAATAGTTTTGTAA-TCTTATAAATGATTTTAAAAATGAAGTT-
1 GAAAGCCTTGTTACTTGCTTTAAGTGGATTTATAACT-TTATAAATAATTTT-AAATTGAA-TTA
* * * *
261124 -TTCT-CATTTTTAGTTAGAACAAATCATAATTTGATGTTTGCATC-GAGAAATATGAAGCAACA
63 CTT-TACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATCAGA-AAATATGAAGCAAAA
* * *
261186 GCCAACCATTGACAACAAAGTCTATTTATAGTCACTCATGCCTTC
126 GCCATCCATTGACAAAAAAGTCCATTTATAGTCACTCATGCCTTC
** * * *
261231 GAAAGCCTTACTACTTGCTTTAACTAGATTTATAATTTTATAAATAATTTTAAATTGAATTACTT
1 GAAAGCCTTGTTACTTGCTTTAAGTGGATTTATAACTTTATAAATAATTTTAAATTGAATTACTT
* * * * * *
261296 TACATATTTGGTTAAAACAGATCATAATTGGATGTCTACATCAGAAAATATAAAGTAAAAGCCAT
66 TACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATCAGAAAATATGAAGCAAAAGCCAT
* *
261361 CCATTGACAACAAAAGTCCATTTACTA-TCACTCATACCTCC
131 CCATTGACAA-AAAAGTCCATTTA-TAGTCACTCATGCCTTC
* * * * *
261402 GCAAGCCTAGTTACTTGCTTTAAGTGGATTTAAAACTTTATAAATGATTTTAAATTAAATTACTT
1 GAAAGCCTTGTTACTTGCTTTAAGTGGATTTATAACTTTATAAATAATTTTAAATTGAATTACTT
* * * * * ** * *
261467 TACATTTTTTGTT-ACACA-AGTCATCATTTTATGTTTACATTGGGAAATGTGAAGCAAAAGCCA
66 TACATTTTTGGTTAAAACAGA-TCATAATTTGATGTTTGCATCAGAAAATATGAAGCAAAAGCCA
* * * ** *
261530 GCCATTGACAAGAAAGTCTATTTATAGTCACTCATATCTTT
130 TCCATTGACAAAAAAGTCCATTTATAGTCACTCATGCCTTC
** * * * *
261571 GAAAGCCTTACTACTTACTTTAAGTGGATTTATAACTTTATAAATGATATTAAACTGAATTACTT
1 GAAAGCCTTGTTACTTGCTTTAAGTGGATTTATAACTTTATAAATAATTTTAAATTGAATTACTT
* * * * ** * * *
261636 TACATATTTGGCTAAAACGGATCATAATTTGATATTTGCATTGGGAAATATAAAGCAAAAGGCAT
66 TACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATCAGAAAATATGAAGCAAAAGCCAT
* * * *
261701 CCATTGACAAGAGAAGTCCATTTGTTGTCATTCATGCCTTTC
131 CCATTGACAA-AAAAGTCCATTTATAGTCACTCATGCC-TTC
* * * * **
261743 -AAAG-CTTTTATACTCGCATTAAGTGGATTTATAACTTTATAAATAATTTTAAATTGATTTTTT
1 GAAAGCCTTGT-TACTTGCTTTAAGTGGATTTATAACTTTATAAATAATTTTAAATTGAATTACT
* * * ** *
261806 TTAC-TTTATTAGTTAAAACAGATCATAATTTGATGTTTCCATCATAAAACGTGAAGTAAAAGCC
65 TTACATTT-TTGGTTAAAACAGATCATAATTTGATGTTTGCATCAGAAAATATGAAGCAAAAGCC
* * * *
261870 ATTCATTGACAAAACAAATCTATTTAT-GCTTACTCATGCCTTC
129 ATCCATTGACAAAA-AAGTCCATTTATAG-TCACTCATGCCTTC
* * * ** *
261913 AAAAGCCTTATTA-TTCACTTTAAGTGGATTTATAACTTT-TTCATCAATTTTAAATTGAATT-G
1 GAAAGCCTTGTTACTT-GCTTTAAGTGGATTTATAACTTTATAAAT-AATTTTAAATTGAATTAC
* * * * * * *
261975 TTTGTCATTTTTAGTTAAAACATATCATAATTTGTTGTTTGCA-CTGAGAAACATGATGCAAAAG
64 TTT-ACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATCAGA-AAATATGAAGCAAAAG
* * * * *
262039 CCATCCATTGATAAGAAAAGTCCATTTCTAGTAACTCTTGCCTTT
127 CCATCCATTGACAA-AAAAGTCCATTTATAGTCACTCATGCCTTC
** * * * **
262084 GAAAGCCTCCTTTCCTGCTTTAAGTGG-TTTCATAACTTTACAAATAATTTTAAATTGAATTGTT
1 GAAAGCCTTGTTACTTGCTTTAAGTGGATTT-ATAACTTTATAAATAATTTTAAATTGAATTACT
** ** * * * * **
262148 TTACATTTTTTTTTAAAACATG-TCATCGTTTCATATTTTCATTGAGAACCT-TGAAGCAAAAGC
65 TTACATTTTTGGTTAAAACA-GATCATAATTTGATGTTTGCA-TCAGAAAATATGAAGCAAAAGC
* * * * * *
262211 CAAT-TATTTACAAGAAAGTTCATTTATAGTCATTCATACCTTC
128 C-ATCCATTGACAAAAAAGTCCATTTATAGTCACTCATGCCTTC
* * *** * **
262254 AAAAGCCTTGTTAATCATTTTAAGTGGATTTATAACTTTCTAAATAATTTTAAATTGAATTTTTT
1 GAAAGCCTTGTTACTTGCTTTAAGTGGATTTATAACTTTATAAATAATTTTAAATTGAA-TTACT
* ** * * * * **
262319 TTCACATTTTTTGTTAAAACAGGCCATCATTTCATGTTTGCATAAGGAAAGGTGAAGC-AAAGCC
65 TT-ACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATCAGAAAATATGAAGCAAAAGCC
*
262383 ATCCATTGACAAGAAAGTCCATTTATAGTCACTCATGCCTTC
129 ATCCATTGACAAAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * * * * *
262425 GAAAGCTTTGTTACTTGCTTTAAGTAGATTTATGACTTTAAAAATGATTTAAAACTGAATTACTT
1 GAAAGCCTTGTTACTTGCTTTAAGTGGATTTATAACTTTATAAATAATTTTAAATTGAATTACTT
* * * * *
262490 TACATATTTGGTTAAAGCAGATCATAATTTGATGGTTGCATCA-AGAAATGTGAAGCAAAAGCTA
66 TACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATCAGA-AAATATGAAGCAAAAGCCA
* * * * * *
262554 TTCGTTAACAATAAAAGTCTATTTATTGTCACCCATGCCTTC
130 TCCATTGACAA-AAAAGTCCATTTATAGTCACTCATGCCTTC
* * * ** * *
262596 GAAAACCTTCTTACTCGAATTAAGTGGATTTATAACTTTATAAATGATTTGAAATTGAAATT--T
1 GAAAGCCTTGTTACTTGCTTTAAGTGGATTTATAACTTTATAAATAATTTTAAATTG-AATTACT
* * ** *
262659 TCTACATGTTTGGTTAAAACAGATCATAATTTGATATTTTTA-CTAGAAAACATGAAGCAAAAGC
65 T-TACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATC-AGAAAATATGAAGCAAAAGC
* * * * * *
262723 CATCCACTGATAAGAAAAGTCTATTTA-CGCTCACTCATACCTTT
128 CATCCATTGACAA-AAAAGTCCATTTATAG-TCACTCATGCCTTC
* * ** ** *
262767 GAAAGCCTTGTTATTTGCTCTAAGTGGATTTATAACTTT-TTCATCAATTTTAAATCAAATT-TT
1 GAAAGCCTTGTTACTTGCTTTAAGTGGATTTATAACTTTATAAAT-AATTTTAAATTGAATTACT
* * * * * *
262830 TTTCTATTTTTGGTTAAAAGAAATCATAATTTGTTGTTTGCATTA-AGAAATATGATGCAAAAGC
65 TTAC-ATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATCAGA-AAATATGAAGCAAAAGC
* *
262894 CATTCATTGACAAGAAAAGCCCATTTATAGT
128 CATCCATTGACAA-AAAAGTCCATTTATAGT
262925 AATTCATAAT
Statistics
Matches: 1736, Mismatches: 392, Indels: 146
0.76 0.17 0.06
Matches are distributed among these distances:
165 2 0.00
166 57 0.03
167 16 0.01
168 50 0.03
169 209 0.12
170 359 0.21
171 969 0.56
172 72 0.04
173 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.38
Consensus pattern (170 bp):
GAAAGCCTTGTTACTTGCTTTAAGTGGATTTATAACTTTATAAATAATTTTAAATTGAATTACTT
TACATTTTTGGTTAAAACAGATCATAATTTGATGTTTGCATCAGAAAATATGAAGCAAAAGCCAT
CCATTGACAAAAAAGTCCATTTATAGTCACTCATGCCTTC
Found at i:262594 original size:683 final size:678
Alignment explanation
Indices: 261133--262924 Score: 1718
Period size: 683 Copynumber: 2.6 Consensus size: 678
261123 TTTCTCATTT
* * * * * **
261133 TTAGTTAGAACAAATCATAATTTGATGTTTGCATCGAGAAATATGAAGCAACAGCCAACCATTGA
1 TTAGTTAAAACAGATCATAATTTGATGTTTGCATCAAGAAATGTGAAGCAAAAGCCATTCATTGA
* * * * * * *
261198 CAACAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTACTACTT-GCTTTAACTAGATTT
66 CAAAAAAGTCTATTTATTGTCACTCATGCCTTCAAAAGCCTTATTA-TTCACTTTAAGTGGATTT
* *
261262 ATAA-TTTTATAAATAATTTTAAATTGAATTACTTTACATATTTGGTTAAAACAGATCATAATTG
130 ATAACTTTT-T-AATAATTTTAAATTGAATT--TTTTCATATTTGGTTAAAACAGATCATAATTT
* * * * * * *
261326 GATGTCTACA-TCAGAAAATATAAAGTAAAAGCCATCCATTGACAACAAAAGTCCATTTACTATC
191 GATGTTTACACT-AGAAAACATGAAGCAAAAGCCATCCATTGATAAGAAAAGTCCATTTACTATA
* * * * *
261390 ACTCATACCTCCGCAAGCCTAGTTACTTGCTTTAAGTGGATTTAAAACTTTATAAATGATTTTAA
255 ACTCATACCTCCGAAAGCCTACTTACCTGCTTTAAGTGGATTTAAAACTTTACAAATAATTTTAA
* * * *
261455 ATTAAATTACTTTACATTTTTTGTTACACAAGTCATCATTTTATGTTTACATTGGGAAATGTGAA
320 ATTAAATTACTTTACATTTTTTGTTAAACAAGTCATCATTTCATATTTACATTGAGAAATGTGAA
* * ** *
261520 GCAAAAGCCAGCCATTGACAAGAAAGTCTATTTATAGTCACTCATATCTTTGAAAGCCTTACTAC
385 GCAAAAGCCAACCATTGACAAGAAAGTCTATTTATAGTCACTCATACCTTCAAAAGCCTTACTAA
* *
261585 TTACTTTAAGTGGATTTATAACTTTATAAATGATATTAAACTGAATTACTTTACATATTTGGCTA
450 TCACTTTAAGTGGATTTATAACTTTATAAATAATATTAAACTGAATTACTTTACATATTTGGCTA
* * ** * *
261650 AAACGGATCATAATTTGATATTTGCATTGGGAAATATAAAGCAAAAGGCATCCATTGACAAGAGA
515 AAACGGACCATAATTTCATATTTGCATAAGGAAAGATAAAGCAAAAGCCATCCATTGACAAGAGA
* * * *
261715 AGTCCATTTGTTGTCATTCATGCCTTTCAAAGCTTTTATACTCGCATTAAGTGGATTTATAACTT
580 AGTCCATTTATAGTCACTCATGCCTTTCAAAGCTTTTATACTCGCATTAAGTAGATTTATAACTT
* * * * ** *
261780 TATAAATAATTTTAAATTGATTTTTTTTACTTTA
645 TAAAAATAATTTAAAACTGAATTACTTTACTATA
* * *
261814 TTAGTTAAAACAGATCATAATTTGATGTTTCCATCATA-AAACGTGAAGTAAAAGCCATTCATTG
1 TTAGTTAAAACAGATCATAATTTGATGTTTGCATCA-AGAAATGTGAAGCAAAAGCCATTCATTG
* *
261878 ACAAAACAAATCTATTTA-TGCTTACTCATGCCTTCAAAAGCCTTATTATTCACTTTAAGTGGAT
65 ACAAAA-AAGTCTATTTATTG-TCACTCATGCCTTCAAAAGCCTTATTATTCACTTTAAGTGGAT
* * * *
261942 TTATAACTTTTTCATCAATTTTAAATTGAATTGTTTGTCATTTTTAGTTAAAACATATCATAATT
128 TTATAACTTTTTAAT-AATTTTAAATTGAATT-TTT-TCATATTTGGTTAAAACAGATCATAATT
* * *
262007 TGTTGTTTGCACT-GAGAAACATGATGCAAAAGCCATCCATTGATAAGAAAAGTCCATTT-CTAG
190 TGATGTTTACACTAGA-AAACATGAAGCAAAAGCCATCCATTGATAAGAAAAGTCCATTTACTA-
* * ** * * *
262070 TAACTCTTGCCTTTGAAAGCCTCCTTTCCTGCTTTAAGTGG-TTTCATAACTTTACAAATAATTT
253 TAACTCATACCTCCGAAAGCCTACTTACCTGCTTTAAGTGGATTT-AAAACTTTACAAATAATTT
* ** * * * * *
262134 TAAATTGAATTGTTTTACATTTTTTTTTAAAACATGTCATCGTTTCATATTTTCATTGAGAACCT
317 TAAATTAAATTACTTTACATTTTTTGTT-AAACAAGTCATCATTTCATATTTACATTGAGAA-AT
** * *
262199 -TGAAGCAAAAGCCAATTATTTACAAGAAAGT-TCATTTATAGTCATTCATACCTTCAAAAGCCT
380 GTGAAGCAAAAGCCAACCATTGACAAGAAAGTCT-ATTTATAGTCACTCATACCTTCAAAAGCCT
** * * * * ** *
262262 TGTTAATCATTTTAAGTGGATTTATAACTTTCTAAATAATTTTAAATTGAATTTTTTTTCACATT
444 TACTAATCACTTTAAGTGGATTTATAACTTTATAAATAATATTAAACTGAA-TTACTTT-ACATA
* * * * * *
262327 TTTTGTTAAAACAGG-CCATCATTTCATGTTTGCATAAGGAAAGGTGAAGC-AAAGCCATCCATT
507 TTTGGCTAAAAC-GGACCATAATTTCATATTTGCATAAGGAAAGATAAAGCAAAAGCCATCCATT
* *
262390 GACAAGA-AAGTCCATTTATAGTCACTCATGCC-TTCGAAAGCTTTGT-TACTTGCTTTAAGTAG
571 GACAAGAGAAGTCCATTTATAGTCACTCATGCCTTTC-AAAGCTTT-TATACTCGCATTAAGTAG
* *
262452 ATTTATGACTTTAAAAATGATTTAAAACTGAATTACTTTAC-ATA
634 ATTTATAACTTTAAAAATAATTTAAAACTGAATTACTTTACTATA
* * * * * *
262496 TTTGGTTAAAGCAGATCATAATTTGATGGTTGCATCAAGAAATGTGAAGCAAAAGCTATTCGTTA
1 -TTAGTTAAAACAGATCATAATTTGATGTTTGCATCAAGAAATGTGAAGCAAAAGCCATTCATTG
* * * *
262561 ACAATAAAAGTCTATTTATTGTCACCCATGCCTTCGAAAA-CCTTCTTACTCGA-ATTAAGTGGA
65 ACAA-AAAAGTCTATTTATTGTCACTCATGCCTTC-AAAAGCCTTATTATTC-ACTTTAAGTGGA
* * * * *
262624 TTTATAACTTTATAAATGATTTGAAATTGAAATTTTCTACATGTTTGGTTAAAACAGATCATAAT
127 TTTATAACTTT-TTAATAATTTTAAATTG-AATTTT-TTCATATTTGGTTAAAACAGATCATAAT
* ** * * **
262689 TTGATATTTTTACTAGAAAACATGAAGCAAAAGCCATCCACTGATAAGAAAAGTCTATTTACGCT
189 TTGATGTTTACACTAGAAAACATGAAGCAAAAGCCATCCATTGATAAGAAAAGTCCATTTACTAT
* ** ** ** * * *
262754 CACTCATACCTTTGAAAGCCTTGTTATTTGCTCTAAGTGGATTTATAACTTTTTC--ATCAATTT
254 AACTCATACCTCCGAAAGCCTACTTACCTGCTTTAAGTGGATTTAAAAC-TTTACAAAT-AATTT
* * * * * * * ** * * *
262817 TAAATCAAATT-TTTTTCTATTTTTGGTTAAAAGAAATCATAATTTGTTGTTTGCATTAAGAAAT
317 TAAATTAAATTACTTTAC-ATTTTTTGTT-AAACAAGTCATCATTTCATATTTACATTGAGAAAT
* * ** * *
262881 ATGATGCAAAAGCCATTCATTGACAAGAAAAGCCCATTTATAGT
380 GTGAAGCAAAAGCCAACCATTGACAAG-AAAGTCTATTTATAGT
262925 AATTCATAAT
Statistics
Matches: 903, Mismatches: 171, Indels: 71
0.79 0.15 0.06
Matches are distributed among these distances:
681 73 0.08
682 222 0.25
683 500 0.55
684 66 0.07
685 40 0.04
686 2 0.00
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (678 bp):
TTAGTTAAAACAGATCATAATTTGATGTTTGCATCAAGAAATGTGAAGCAAAAGCCATTCATTGA
CAAAAAAGTCTATTTATTGTCACTCATGCCTTCAAAAGCCTTATTATTCACTTTAAGTGGATTTA
TAACTTTTTAATAATTTTAAATTGAATTTTTTCATATTTGGTTAAAACAGATCATAATTTGATGT
TTACACTAGAAAACATGAAGCAAAAGCCATCCATTGATAAGAAAAGTCCATTTACTATAACTCAT
ACCTCCGAAAGCCTACTTACCTGCTTTAAGTGGATTTAAAACTTTACAAATAATTTTAAATTAAA
TTACTTTACATTTTTTGTTAAACAAGTCATCATTTCATATTTACATTGAGAAATGTGAAGCAAAA
GCCAACCATTGACAAGAAAGTCTATTTATAGTCACTCATACCTTCAAAAGCCTTACTAATCACTT
TAAGTGGATTTATAACTTTATAAATAATATTAAACTGAATTACTTTACATATTTGGCTAAAACGG
ACCATAATTTCATATTTGCATAAGGAAAGATAAAGCAAAAGCCATCCATTGACAAGAGAAGTCCA
TTTATAGTCACTCATGCCTTTCAAAGCTTTTATACTCGCATTAAGTAGATTTATAACTTTAAAAA
TAATTTAAAACTGAATTACTTTACTATA
Found at i:263540 original size:171 final size:172
Alignment explanation
Indices: 262960--263992 Score: 934
Period size: 171 Copynumber: 6.0 Consensus size: 172
262950 TGAAGCCGGT
* *
262960 ATTCAATTATAATATATTTTAATAAAAAATGTAAAAGAATTCAACTTAAAATCAATTATGAG-TT
1 ATTCAATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATT
* * ** *
263024 ATAAAACTATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGGGTGTTTATAAAATCGACTTTT-
66 ATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGAGTGACTAT-AAATGGACTTTTC
* * * * * * *
263088 TCTACCAATGAATGAG-TTTGT-CTTCACG-TTTGCCGAGGTAGAT
130 T-TGCCAATGAATG-GCTTTTTCCTTCATGATTT-TCAAGGCAGAC
* * *
263131 ATTCAAATT-TAATCTATTTTAACAAAAAATGTAAAAAAATTCAA--T-AAGTCAATTATGCGAT
1 ATTC-AATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGAT
* * * *** * *
263192 GATAAAACCCTATAAAGCAAGTAATATCACTTTCGAAGGCTTGTGTGACTATAAATGGA-TTTTC
65 TATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTC
* * * * * * **
263256 TTGTCAATGGA-GGGTTTTTACTTCATG-TGTCCCTCGGTAGGCATTC
130 TTGCCAATGAATGGCTTTTTCCTTCATGAT-T--TTC--AAGGCAGAC
* * * *
263302 AATTCAATTACAATATGTTTTAACTAAAAATGTAAAAAAATTCAACTTAAAATCAATTACGAGAT
1 -ATTCAATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGAT
* * * *
263367 TATAAAACTATTTAAAGTAAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGATTTTTC
65 TATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTC
*
263432 TTGCAAATGAATGGCTTTTTCCTT-ATGATTTTCAAGGCAGAC
130 TTGCCAATGAATGGCTTTTTCCTTCATGATTTTCAAGGCAGAC
* * * * * * *
263474 ATTCAATTATAATCTGTTTTAATAAAAAATGTAAAAAATTTAAAGTTAAAATCAATTATAAGATT
1 ATTCAATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATT
* ** * * * *
263539 ATAATACCATTTAAAGTGAGTAATAAGGGTTTCGAAGGCTTGAGTGACTTTAAGTGGACTTTTCT
66 ATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCT
* * * * * *
263604 TGCCAGTGGATGGC-TTTTGCTTCAT-ATTTCTGAAAGCAAAC
131 TGCCAATGAATGGCTTTTTCCTTCATGATTT-TCAAGGCAGAC
* * * * *
263645 ATTCAATTATAATATATTTTAACCACAAATATAAAACAATTCCACTTAAAATCAATTATGAGATT
1 ATTCAATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATT
* * * *
263710 ATAAAGCCATTTAACGCAAGTAATAAGGCTTTCAAAGGCATGAGTGACTATTAATGGACTTTTCT
66 ATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCT
* * *
263775 TGCCAATGAATGG-TTTTTTCTTCAT-ATTTCCTGAGGCAGAC
131 TGCCAATGAATGGCTTTTTCCTTCATGATTTTC-AAGGCAGAC
* * * * * * *
263816 ATTCAATAATAATCTGTTTTGACAAAAAATATAAAAAAAATTAAACTTAAAATCAATTACGAGAT
1 ATTCAATTATAATATATTTTAACAAAAAATGT-AAAAAAATTCAACTTAAAATCAATTATGAGAT
* * ** ** * * * * *
263881 TGTAAAACTATTTAAAGTGAGTAATAACACCATT-GAAGGCTTGAGTGAATATAGATGGACTTTC
65 TATAAAACCATTTAAAGCAAGTAATAA-GGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
* * * *
263945 CTTGCCAATGGATGGC-TTTTCCTTCATGTTTTTGAAAGCAGAC
129 CTTGCCAATGAATGGCTTTTTCCTTCATGATTTTCAAGGCAGAC
263988 ATTCA
1 ATTCA
263993 TATTTTTAGA
Statistics
Matches: 693, Mismatches: 143, Indels: 51
0.78 0.16 0.06
Matches are distributed among these distances:
165 1 0.00
166 5 0.01
167 18 0.03
168 20 0.03
169 44 0.06
170 11 0.02
171 341 0.49
172 154 0.22
173 6 0.01
174 3 0.00
175 62 0.09
176 17 0.02
177 11 0.02
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.35
Consensus pattern (172 bp):
ATTCAATTATAATATATTTTAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATT
ATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCT
TGCCAATGAATGGCTTTTTCCTTCATGATTTTCAAGGCAGAC
Found at i:263962 original size:514 final size:513
Alignment explanation
Indices: 262960--263992 Score: 1140
Period size: 514 Copynumber: 2.0 Consensus size: 513
262950 TGAAGCCGGT
* *
262960 ATTCAATTATAATATATTTTAATAAAAAATGTAAAAGAATTCAACTTAAAATCAATTATGAGTTA
1 ATTCAATTATAATATATTTTAATAAAAAATGTAAAAGAATTAAACTTAAAATCAATTATAAGTTA
* * *
263025 TAAAACTATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGGGTGTTTATAAAATCGACTTTTTC
66 TAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGAGTGCTTATAAAATCGACTTTTTC
* * * * * *
263090 TACCAATGAATGAGTTTGTCTTCACGTTTGCCGAGGTAGATATTCAAATTTAATCTATTTTAACA
131 TACCAATGAATGAGTTTGTCTTCACATTTGCCGAAGCAAACATTCAAATTTAATATATTTTAACA
* * * * *
263155 AAAAATGTAAAAAAATTCAATAAGTCAATTATGCGATGATAAAACCCTATAAAGCAAGTAATATC
196 AAAAATATAAAAAAATTCAATAAATCAATTATGAGATGATAAAACCATATAAAGCAAGTAATAAC
* * * * * *
263220 ACTTTCGAAGGCTTGTGTGACTATAAATGGATTTTCTTGTCAATGGAGGGTTTTTACTTCATGTG
261 ACTTTCAAAGGCATGAGTGACTATAAATGGATTTTCTTGCCAATGAAGGGTTTTTACTTCATATG
** * * * *
263285 TCCCTCGGTAGGCATTCAATTCAATTACAATATGTTTTAACTAAAAATGTAAAAAAATTCAACTT
326 TCCCTC-GTAGGCAGACAATTCAATAACAATATGTTTTAACAAAAAATATAAAAAAATTAAACTT
** * *
263350 AAAATCAATTACGAGATTATAAAACTATTTAAAGTAAGTAATAAGGCTTTCGAAGGCATGGGTGA
390 AAAATCAATTACGAGATTATAAAACTATTTAAAGTAAGTAATAAACCATTCGAAGGCATGAGTGA
* * * *
263415 CTATAAATGGATTTTTCTTGCAAATGAATGGCTTTTTCCTT-ATGATTTTCAAGGCAGAC
455 ATATAAATGGACTTTCCTTGCAAATGAATGGC-TTTTCCTTCATGATTTTCAAAGCAGAC
* * *
263474 ATTCAATTATAATCTGTTTTAATAAAAAATGTAAAA-AATTTAAAGTTAAAATCAATTATAAGAT
1 ATTCAATTATAATATATTTTAATAAAAAATGTAAAAGAA-TTAAACTTAAAATCAATTATAAG-T
* ** * * * *
263538 TATAATACCATTTAAAGTGAGTAATAAGGGTTTCGAAGGCTTGAGTGACTT-T-AAGTGGAC-TT
64 TATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGAGTG-CTTATAAAATCGACTTT
* * * * *
263600 TTCTTGCCAGTGGATG-GCTTT-TGCTTCATATTT-CTGAAAGCAAACATTC-AATTATAATATA
128 TTC-TACCAATGAATGAG-TTTGT-CTTCACATTTGCCG-AAGCAAACATTCAAATT-TAATATA
* * * * * * * *
263661 TTTTAACCACAAATATAAAACAATTCCACTTAAAATCAATTATGAGATTATAAAGCCATTTAACG
188 TTTTAACAAAAAATATAAAAAAATT-CA-AT-AAATCAATTATGAGATGATAAAACCATATAAAG
** * *
263726 CAAGTAATAAGGCTTTCAAAGGCATGAGTGACTATTAATGGACTTTTCTTGCCAATGAATGGTTT
250 CAAGTAATAACACTTTCAAAGGCATGAGTGACTATAAATGGA-TTTTCTTGCCAATGAAGGGTTT
* * * * *
263791 TTTCTTCATAT-TTCCT-G-AGGCAGAC-ATTCAATAATAATCTGTTTTGACAAAAAATATAAAA
314 TTACTTCATATGTCCCTCGTAGGCAGACAATTCAATAACAATATGTTTTAACAAAAAATAT-AAA
* *
263852 AAAATTAAACTTAAAATCAATTACGAGATTGTAAAACTATTTAAAGTGAGTAATAACACCATT-G
378 AAAATTAAACTTAAAATCAATTACGAGATTATAAAACTATTTAAAGTAAGTAATAA-ACCATTCG
* * * * * *
263916 AAGGCTTGAGTGAATATAGATGGACTTTCCTTGCCAATGGATGGCTTTTCCTTCATGTTTTTGAA
442 AAGGCATGAGTGAATATAAATGGACTTTCCTTGCAAATGAATGGCTTTTCCTTCATGATTTTCAA
263981 AGCAGAC
507 AGCAGAC
263988 ATTCA
1 ATTCA
263993 TATTTTTAGA
Statistics
Matches: 428, Mismatches: 76, Indels: 30
0.80 0.14 0.06
Matches are distributed among these distances:
513 49 0.11
514 235 0.55
515 48 0.11
516 3 0.01
517 65 0.15
518 28 0.07
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.35
Consensus pattern (513 bp):
ATTCAATTATAATATATTTTAATAAAAAATGTAAAAGAATTAAACTTAAAATCAATTATAAGTTA
TAAAACCATTTAAAGCAAGTAATAAGGCTTTCGAAGGCATGAGTGCTTATAAAATCGACTTTTTC
TACCAATGAATGAGTTTGTCTTCACATTTGCCGAAGCAAACATTCAAATTTAATATATTTTAACA
AAAAATATAAAAAAATTCAATAAATCAATTATGAGATGATAAAACCATATAAAGCAAGTAATAAC
ACTTTCAAAGGCATGAGTGACTATAAATGGATTTTCTTGCCAATGAAGGGTTTTTACTTCATATG
TCCCTCGTAGGCAGACAATTCAATAACAATATGTTTTAACAAAAAATATAAAAAAATTAAACTTA
AAATCAATTACGAGATTATAAAACTATTTAAAGTAAGTAATAAACCATTCGAAGGCATGAGTGAA
TATAAATGGACTTTCCTTGCAAATGAATGGCTTTTCCTTCATGATTTTCAAAGCAGAC
Found at i:267063 original size:170 final size:167
Alignment explanation
Indices: 266259--267078 Score: 587
Period size: 171 Copynumber: 4.8 Consensus size: 167
266249 ATGTTTCCTG
* * * * * * *
266259 AAGCAAACATTTAATTATAACAT-TTTTCAACCAAAAAGTA-AAAAAATTCAACTTAAATTCGAT
1 AAGCAGACATTCAATTATAATATATTTT-AACCAAAAA-TATAAAAAATTTAACATAAAATCAAT
* * * * *** * *
266322 TATGAGATTGTAAAACCATATAAAGCAAGTAATAAGGCTTTCAAAGGTAGGGGTGACAATAAGTG
64 TATGAGATTATAAAACCATTTAAAGCAAGTAATATGGCTTTCAAAGGCATAAGTGACTATAAATG
* * * * *
266387 GACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTCTCC
129 GACTTTTCTTGCTAATGAAT-GATTTTGCTTCACGTTCT-T
* * * * * ** * * *********
266428 AAGGTAGACATTCAAATATGATTTGTTTTAATAAAAAATATAAAAAAATCTAACTTNNNNNNNNN
1 AA-GCAGACATTCAATTATAATATATTTTAACCAAAAATAT-AAAAAATTTAACATAAAATCAAT
* * * * ** * *
266493 NATGAGATTATAAAACCATTTAAAGCGAGCAATATGACTTTTGAAGGCTTAAGTGATTATAAATG
64 TATGAGATTATAAAACCATTTAAAGCAAGTAATATGGCTTTCAAAGGCATAAGTGACTATAAATG
* * *
266558 GACTTTTCTTGCTAATGGATGGCTTTTGCTTCACGTTTCCT
129 GACTTTTCTTGCTAATGAAT-GATTTTGCTTCACG-TTCTT
* * * * *
266599 AA-CAAACATTCAATTATTATATATTTTAACCACAAATATAAAAAGATTCAACTTAAAATCAATT
1 AAGCAGACATTCAATTATAATATATTTTAACCAAAAATATAAAAA-ATTTAACATAAAATCAATT
* * * ** * *
266663 ATGAGATTATAAAACTATTTAAAGCAACTAAAATGGCTTTCAAAGGCATGGGTGGCTGTAAATGG
65 ATGAGATTATAAAACCATTTAAAGCAAGTAATATGGCTTTCAAAGGCATAAGTGACTATAAATGG
* * * ** * *
266728 ACATTTCTTTCCAATGAATGACTTTTTTTTTCATGTT-TACA
130 ACTTTTCTTGCTAATGAATGA--TTTTGCTTCACGTTCT--T
* * * *
266769 AAGCCAGACATTCAAATATAATAT-TTGTTAACTAAAAATATAAAAAAAATTAA-ATTTAAAATT
1 AAG-CAGACATTCAATTATAATATATT-TTAACCAAAAATAT-AAAAAATTTAACA--TAAAATC
* *
266832 ACTTATGAGATTATAAAACTATTTAAAGCAAGTAATATGGCTTTCAAAGGCA-AAGGTGACTATA
61 AATTATGAGATTATAAAACCATTTAAAGCAAGTAATATGGCTTTCAAAGGCATAA-GTGACTATA
***
266896 AATATTCTTTTCTTGCTAATGAATGTATTTTGCTTCACGTTCTT
125 AATGGACTTTTCTTGCTAATGAATG-ATTTTGCTTCACGTTCTT
*
266940 AGAGGCAGACATTCAATTATAATATATTTTAACCAAAAATCTAAAAAATTTAACATAAAATCAAT
1 A-A-GCAGACATTCAATTATAATATATTTTAACCAAAAATATAAAAAATTTAACATAAAATCAAT
* * * * * *
267005 TATAACATTATAAAACCATTGAAATCGAGTAATAAT-GCTTTCGAAA-GCATCAGTGACTATAAA
64 TATGAGATTATAAAACCATTTAAAGCAAGTAAT-ATGGCTTTC-AAAGGCATAAGTGACTATAAA
*
267068 TGAACTTTTCT
127 TGGACTTTTCT
267079 CCCAAATGGA
Statistics
Matches: 495, Mismatches: 130, Indels: 51
0.73 0.19 0.08
Matches are distributed among these distances:
168 6 0.01
169 107 0.22
170 95 0.19
171 116 0.23
172 80 0.16
173 90 0.18
174 1 0.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (167 bp):
AAGCAGACATTCAATTATAATATATTTTAACCAAAAATATAAAAAATTTAACATAAAATCAATTA
TGAGATTATAAAACCATTTAAAGCAAGTAATATGGCTTTCAAAGGCATAAGTGACTATAAATGGA
CTTTTCTTGCTAATGAATGATTTTGCTTCACGTTCTT
Found at i:267104 original size:170 final size:170
Alignment explanation
Indices: 266245--267129 Score: 657
Period size: 170 Copynumber: 5.2 Consensus size: 170
266235 CTAGCATTTA
* * * *
266245 CTTCATGTTTCCTGAA-GCAAACATTTAATTATAACAT-TTTTCAACCAAAAAGTA-AAAAAATT
1 CTTCACGTTTCCT-AAGGCAGACATTCAATTATAATATATTTT-AACCAAAAA-TATAAAAAATT
* * * * * * * * *
266307 CAACTTAAATTCGATTATGAGATTGTAAAACCATATAAAGCAAGTAATAAGGCTTTCAAAGGTAG
63 TAACATAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATATGGCTTTCAAAGGCAT
** * * * *
266372 GGGTGACAATAAGTGGACTTTTCTTGCC-AATGAATGGCTTTTT
128 AAGTGACTATAAATGAACTTTTCTT-CCTAATGAATGGCTTTTG
* * * * * * ** *
266415 CTTCATGTTCTCC-AAGGTAGACATTCAAATATGATTTGTTTTAATAAAAAATATAAAAAAATCT
1 CTTCACGTT-TCCTAAGGCAGACATTCAATTATAATATATTTTAACCAAAAATAT-AAAAAATTT
* ********** * * * ** *
266479 AACTTNNNNNNNNNNATGAGATTATAAAACCATTTAAAGCGAGCAATATGACTTTTGAAGGCTTA
64 AACATAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATATGGCTTTCAAAGGCATA
* * * *
266544 AGTGATTATAAATGGACTTTTCTTGCTAATGGATGGCTTTTG
129 AGTGACTATAAATGAACTTTTCTTCCTAATGAATGGCTTTTG
* * * *
266586 CTTCACGTTTCCTAA--CAAACATTCAATTATTATATATTTTAACCACAAATATAAAAAGATTCA
1 CTTCACGTTTCCTAAGGCAGACATTCAATTATAATATATTTTAACCAAAAATATAAAAA-ATTTA
* * * * **
266649 ACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGCAACTAAAATGGCTTTCAAAGGCATGG
65 ACATAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATATGGCTTTCAAAGGCATAA
* * * * * *
266714 GTGGCTGTAAATGGACATTTCTTTCC-AATGAATGACTTTTTT
130 GTGACTATAAATGAACTTTTC-TTCCTAATGAATGGC-TTTTG
* * * * * * * *
266756 TTTCATGTTTACAAAGCCAGACATTCAAATATAATAT-TTGTTAACTAAAAATATAAAAAAAATT
1 CTTCACGTTTCCTAAGGCAGACATTCAATTATAATATATT-TTAACCAAAAATAT-AAAAAATTT
* * *
266820 AA-ATTTAAAATTACTTATGAGATTATAAAACTATTTAAAGCAAGTAATATGGCTTTCAAAGGCA
64 AACA--TAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATATGGCTTTCAAAGGCA
* * **
266884 -AAGGTGACTATAAAT-ATTCTTTTCTTGCTAATGAATGTATTTTG
127 TAA-GTGACTATAAATGA-ACTTTTCTTCCTAATGAATGGCTTTTG
* *
266928 CTTCACG-TTCTTAGAGGCAGACATTCAATTATAATATATTTTAACCAAAAATCTAAAAAATTTA
1 CTTCACGTTTCCTA-AGGCAGACATTCAATTATAATATATTTTAACCAAAAATATAAAAAATTTA
* * * * *
266992 ACATAAAATCAATTATAACATTATAAAACCATTGAAATCGAGTAATAAT-GCTTTCGAAA-GCAT
65 ACATAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAAT-ATGGCTTTC-AAAGGCAT
* * * * *
267055 CAGTGACTATAAATGAACTTTTCTCCCAAATGGATGGCTTTTA
128 AAGTGACTATAAATGAACTTTTCTTCCTAATGAATGGCTTTTG
* *
267098 CTTCACGTTTCCTAAGGTAGACATTGAATTAT
1 CTTCACGTTTCCTAAGGCAGACATTCAATTAT
267130 GAGATTGTAA
Statistics
Matches: 550, Mismatches: 138, Indels: 54
0.74 0.19 0.07
Matches are distributed among these distances:
168 5 0.01
169 104 0.19
170 150 0.27
171 127 0.23
172 79 0.14
173 85 0.15
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.34
Consensus pattern (170 bp):
CTTCACGTTTCCTAAGGCAGACATTCAATTATAATATATTTTAACCAAAAATATAAAAAATTTAA
CATAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGTAATATGGCTTTCAAAGGCATAAG
TGACTATAAATGAACTTTTCTTCCTAATGAATGGCTTTTG
Found at i:267417 original size:171 final size:171
Alignment explanation
Indices: 267124--267488 Score: 391
Period size: 171 Copynumber: 2.1 Consensus size: 171
267114 GTAGACATTG
* * *
267124 AATTATGAGATTGTAAAACCATTTAAAGCAAACAATAAGGCTTTCGAAAGTATGGGTGACTACAA
1 AATTATGAGATTATAAAACCATTTAAAGCAAACAACAAGGCTTTCGAAAGTATAGGTGACTACAA
* * * * *
267189 ATAGACTCTTCTTACCAATGCATAGCATTTTCTTCATGTTTCCCAAGGTACACATTCAAATCTTA
66 ATAGACTCTTCTTACCAATGAATAGCATTTTCTTCATGTTTCCCAAGGCAAACATTCAAATATAA
* * * * * **
267254 TCTCTTTTAACCAAGAATGTAAAAATATTCAACT-TAAAATT
131 TATATTTTAACCAAAAATCTAAAAAAATTCAA-TATAAAACC
* *
267295 AATTATGAGATTATAAAATCATTTAAAGCAAGA-AACAAGGCTTTC-AAAGGTATAGGTGACTAT
1 AATTATGAGATTATAAAACCATTTAAAGCAA-ACAACAAGGCTTTCGAAA-GTATAGGTGACTAC
** * * * ** *
267358 AAATATTC-CTTTCTTGCTAATGAAT-GTATTTTGCTTCATG-TTCTTAGAGGCAAACATTCAAT
64 AAATAGACTC-TTCTTACCAATGAATAGCATTTT-CTTCATGTTTCCCA-AGGCAAACATTCAAA
*
267420 TATAATATATTTTAACCAAAAATCTAAAAAAATTTAATATAAAACC
126 TATAATATATTTTAACCAAAAATCTAAAAAAATTCAATATAAAACC
*
267466 AATTATGACATTATAAAACCATT
1 AATTATGAGATTATAAAACCATT
267489 GAAATCGAGT
Statistics
Matches: 160, Mismatches: 28, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
170 15 0.09
171 144 0.90
172 1 0.01
ACGTcount: A:0.41, C:0.15, G:0.11, T:0.34
Consensus pattern (171 bp):
AATTATGAGATTATAAAACCATTTAAAGCAAACAACAAGGCTTTCGAAAGTATAGGTGACTACAA
ATAGACTCTTCTTACCAATGAATAGCATTTTCTTCATGTTTCCCAAGGCAAACATTCAAATATAA
TATATTTTAACCAAAAATCTAAAAAAATTCAATATAAAACC
Found at i:267912 original size:171 final size:170
Alignment explanation
Indices: 267586--269565 Score: 1615
Period size: 171 Copynumber: 11.6 Consensus size: 170
267576 AGGTAGACAT
* ** * * *
267586 TCAATTATGAGATTGTAAAACCATTTAAAGAAAGCAATAAGGCTTTCGAAGGTATGGGTGACTAT
1 TCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTAT
* * * * * * *
267651 AAATAGACTTTTTTTTACCAATGCATAGCTTTTTCTTTATGTTT-CTCAAGGTACACATTCAAAT
66 AAATAGAC-TTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTTCCT-AAGGCAAACATTCAAAT
* * *
267715 CTTAA-CTATTTTAACCAAGAATGTAAAAATATTCAACTTAAAA
129 -ATAATATATTTTAACCAAAAATGTAAAAA-ATTCAACTTAAAA
* * * * *
267758 TCAATTCTGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCAAAGGCATAGGCGACTAG
1 TCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTAT
* *
267823 AAAT-GAACTTTTCTTGCCAATGAATGGCTTTTTCTTTATGTGTCCTAAGGCAAACATTCAAATA
66 AAATAG-ACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTTCCTAAGGCAAACATTCAAATA
* * *
267887 TAATCTGTTTTAGCCAAAAATGTAAAAACATTCAACTTAAAA
130 TAATATATTTTAACCAAAAATGTAAAAA-ATTCAACTTAAAA
* * * * * *
267929 TCTATTATGATATTGTAAAATCATTTAAAGCGAGTAGTAAAGCTTTCGAAGGCAT-GAGTGACTA
1 TCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAG-GTGACTA
* * * * * *
267993 TAAATGGACTTTTCTTGCCATTGAATAGCTTTTTCTTCATGTTTCCAAAGACAAACATTCAAACA
65 TAAATAGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTTCCTAAGGCAAACATTCAAATA
* * * * *
268058 TAATCTGTTTTCACTAAAAATGTAAAAAAATTCAACTTTTTTATGAGA
130 TAATATATTTTAACCAAAAATGT-AAAAAATTCAAC----TTA--AAA
* * * * * * *
268106 T-TATTATGAGATTATTAAACTATTTAAAACGAGTAATAAAGCTCTCGAAGGC-TTGAGTGACTA
1 TCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAG-GTGACTA
* * * * * * ** * * * * * *
268169 CAAATAGACTTTTTTTGTCAGTGGATAGCTTTCACATCATATTTCTTGAA-GCAGATATTCAATT
65 TAAATAGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTTCCT-AAGGCAAACATTCAAAT
* *
268233 ATAATATATTTTAGCCAAAAATGTCAAACAATTCAACTTAAAA
129 ATAATATATTTTAACCAAAAATGT-AAAAAATTCAACTTAAAA
**
268276 TCAATTATGAGATTATAAAACCATTTAAAG-GAAGCCATAAGGCTTTCGAAGGCATAGGTGACTA
1 TCAATTATGAGATTATAAAACCATTTAAAGCG-AGTAATAAGGCTTTCGAAGGCATAGGTGACTA
** * * * * *
268340 TAAATAGACTTTTCTTGTTAGTGAATGG-TATTTTCTTCATGTTTCCCAAGGTAGACATTAAAAT
65 TAAATAGACTTTTCTTGCCAATGAATGGCT-TTTTCTTCATGTTTCCTAAGGCAAACATTCAAAT
* * *
268404 ATAATCTATTCTAACCAAAAATGTAAAAACAATCAACTTAAAA
129 ATAATATATTTTAACCAAAAATGTAAAAA-ATTCAACTTAAAA
* * * * * *
268447 TAAATTATGAGATTATAAAACTATTTAGAGCGAGTAATAACGCTTTTGAA--CATATGAGTTACT
1 TCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATA-G-GTGACT
* * * * *
268510 ATAAATGGACTTTTCTTGCCAATGAATAGCTTTTTCTTCATGTTTTCC-AAGACAGACATTTAAA
64 ATAAATAGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATG-TTTCCTAAGGCAAACATTCAAA
* * * * * * *
268574 CATAATTTGTTTTCACCAAAAATGTAAAAAAAATTTAGCTTATAA
128 TATAATATATTTTAACCAAAAATGT--AAAAAATTCAACTTAAAA
* * * * * *
268619 TCAATTGTGAGATTATTAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCTTAAGTGATTAT
1 TCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTAT
* * * * *
268684 AAATAGACTTTTCTTACCAGTGGATGGCTTTTACTTCATGCTTCCTGAA-GCAAACATTC-AATC
66 AAATAGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTTCCT-AAGGCAAACATTCAAAT-
* * * *
268747 GTAATATATTTTAACCATAAATATAAAACAATTTAACTTAAAA
129 ATAATATATTTTAACCAAAAATGTAAAA-AATTCAACTTAAAA
* * ** * ** * *
268790 CCAATTATGATATTATAAAACCATTTAAAGTAAGCAATAAGGCTTTTAAAGTCATAGGCGACTAT
1 TCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTAT
* ** * * * *
268855 -AATAGACTTTTCTTGCTAATGAATGATTTTTTCCTCACGTTCCCCT-AGGTAAACATTCAAATA
66 AAATAGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTT-TCCTAAGGCAAACATTCAAATA
* *
268918 TAATATGTTTTAACCAAAAATGTAAAAAATTTAACTTAAAAA
130 TAATATATTTTAACCAAAAATGTAAAAAATTCAACTT-AAAA
* * * * * * * * * *
268960 T-AAATATGAGATTATAAAACCACTTAAAGCGAATAATAAAGCTTTTGAGGGC-TTGAATGATTG
1 TCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAG-GTGACTA
* * ** * * * * *
269023 TAAATAGACTTTTCTAG-CAATGGATGGCTTTCACTTCATATTTCCTGAA-GTAGACATTTAATT
65 TAAATAGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTTCCT-AAGGCAAACATTCAAAT
* * *
269086 ATAATATTTTTTAACAAAAAATGTGAAAAAACTCAACTTAAAA
129 ATAATATATTTTAACCAAAAATGT-AAAAAATTCAACTTAAAA
* * * * *
269129 TCAATTATAAGATTATAAAACCATAT-AA-CG-CT--T---G---T-GAAGGCA-AGGGTCATTA
1 TCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATA-GGTGACTA
* * * *
269181 TAAATGGACTTTTCTTACCAATGAATGG-TTTTTATTTCATATTCTCC-AAGGCAAACATTCAAA
65 TAAATAGACTTTTCTTGCCAATGAATGGCTTTTT-CTTCATGTT-TCCTAAGGCAAACATTCAAA
* * * * * *
269244 TATTATTTGTTTTAACCAAAAATATAAAAAAATCTAATTTAAAA
128 TATAATATATTTTAACCAAAAATGTAAAAAATTC-AACTTAAAA
* * * * * * * *
269288 TCAATTAAGAGATTAGAAAACTATTTAAAGCAAGTAATAAGGCTTTCAAAGGC-TTGAATGACAA
1 TCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAG-GTGACTA
* * * * *
269352 TAAATAGACTTTGCTTGCTAAT-ATATGGCTTTTGCCTT-ATGTTTCCTAAAGCAAACATTCAAT
65 TAAATAGACTTTTCTTGCCAATGA-ATGGCTTTT-TCTTCATGTTTCCTAAGGCAAACATTCAAA
* * * *
269415 TATTATATATTTTAACCACAAATATAAAAAATTTAACTTAAAA
128 TATAATATATTTTAACCAAAAATGTAAAAAATTCAACTTAAAA
* * * ** * *
269458 TCAATTACGAGTTTATAAAACCATTTAAAGCAAGTAATAAGATTTTTGAAGGCATAGGTGGCTAT
1 TCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTAT
*
269523 AAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTT
66 AAATAGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTT
269566 NNNNNNNNNN
Statistics
Matches: 1440, Mismatches: 297, Indels: 144
0.77 0.16 0.08
Matches are distributed among these distances:
158 36 0.03
159 77 0.05
160 5 0.00
161 1 0.00
162 2 0.00
164 1 0.00
165 1 0.00
167 2 0.00
168 7 0.00
169 118 0.08
170 232 0.16
171 609 0.42
172 204 0.14
173 7 0.00
174 3 0.00
175 4 0.00
176 126 0.09
177 5 0.00
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.35
Consensus pattern (170 bp):
TCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTAT
AAATAGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTTCCTAAGGCAAACATTCAAATAT
AATATATTTTAACCAAAAATGTAAAAAATTCAACTTAAAA
Found at i:267938 original size:465 final size:461
Alignment explanation
Indices: 266657--268007 Score: 1764
Period size: 465 Copynumber: 2.9 Consensus size: 461
266647 CAACTTAAAA
* * * * * * *
266657 TCAATTATGAGATTATAAAACTATTTAAAGCAACTAA-AATGGCTTTCAAAGGCATGGGTGGCTG
1 TCAATTATGAGATTGTAAAACCATTTAAAGAAAC-AATAA-GGCTTTCGAAGGTATGGGTGACTA
* * * * * ** *
266721 TAAATGGACATTTCTTT-CCAATGAAT-GACTTTTTTTTTCATGTTTACAAAGCCAGACATTCAA
64 TAAATAGAC-TTTTTTTACCAATGCATAG-CTTTTTCTTT-ATGTTT-CCAAGGTACACATTCAA
* * * * * * * *
266784 AT-ATAA-TATTTGTTAACTAAAAATATAAAAAAAATTAAATTTAAAATTACTTATGAGATTATA
125 ATCTTAACTA-TT-TTAACCAAGAATGT-AAAAATATTCAACTTAAAATTAATTATGAGATTATA
* * *
266847 AAACTATTTAAAGCAAGTAATATGGCTTTCAAAGGCAAAGGTGACTATAAATATTCTTTTCTTGC
187 AAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCATAGGTGACTATAAATATTCTTTTCTTGC
* *
266912 TAATGAATGTATTTTGCTTCACGTTCTTAGAGGCAGACATTCAATTATAATATATTTTAACCAAA
252 TAATGAATGTATTTTGCTTCATGTTCTTAGAGGCAAACATTCAATTATAATATATTTTAACCAAA
* *
266977 AATCTAAAAAATTTAACATAAAATCAATTATAACATTATAAAACCATTGAAATCGAGTAATAATG
317 AATCTAAAAAATTTAACTTAAAATCAATTATGACATTATAAAACCATTGAAATCGAGTAATAATG
*
267042 CTTTCGAAAGCATCAGTGACTATAAATGAACTTTTCTCCCAAATGGATGGCTTTTACTTCACGTT
382 CTTTCGAAGGCATCAGTGACTATAAATGAACTTTTCTCCCAAATGGATGGCTTTTACTTCACGTT
267107 TCCTAAGGTAGACAT
447 TCCTAAGGTAGACAT
* * *
267122 TGAATTATGAGATTGTAAAACCATTTAAAGCAAACAATAAGGCTTTCGAAAGTATGGGTGACTAC
1 TCAATTATGAGATTGTAAAACCATTTAAAG-AAACAATAAGGCTTTCGAAGGTATGGGTGACTAT
* * * *
267187 AAATAGACTCTTCTTACCAATGCATAGCATTTTCTTCATGTTTCCCAAGGTACACATTCAAATCT
65 AAATAGACTTTTTTTACCAATGCATAGCTTTTTCTTTATGTTT-CCAAGGTACACATTCAAATCT
* * *
267252 TATCTCTTTTAACCAAGAATGTAAAAATATTCAACTTAAAATTAATTATGAGATTATAAAATCAT
129 TAACTATTTTAACCAAGAATGTAAAAATATTCAACTTAAAATTAATTATGAGATTATAAAACCAT
* * * *
267317 TTAAAGCAAGAAACAAGGCTTTCAAAGGTATAGGTGACTATAAATATTCCTTTCTTGCTAATGAA
194 TTAAAGCAAGTAATAAGGCTTTCAAAGGCATAGGTGACTATAAATATTCTTTTCTTGCTAATGAA
267382 TGTATTTTGCTTCATGTTCTTAGAGGCAAACATTCAATTATAATATATTTTAACCAAAAATCTAA
259 TGTATTTTGCTTCATGTTCTTAGAGGCAAACATTCAATTATAATATATTTTAACCAAAAATCT-A
* * *
267447 AAAAATTTAA-TATAAAACCAATTATGACATTATAAAACCATTGAAATCGAGTAATAGTGCTTTT
323 AAAAATTTAACT-TAAAATCAATTATGACATTATAAAACCATTGAAATCGAGTAATAATGCTTTC
* *
267511 GAAGGCATCAGTGACTATAAATGAACTTTTCTCCCCAATGGATGGCTTTTACTTCACGTTTCCTG
387 GAAGGCATCAGTGACTATAAATGAACTTTTCTCCCAAATGGATGGCTTTTACTTCACGTTTCCTA
267576 AGGTAGACAT
452 AGGTAGACAT
267586 TCAATTATGAGATTGTAAAACCATTTAAAGAAAGCAATAAGGCTTTCGAAGGTATGGGTGACTAT
1 TCAATTATGAGATTGTAAAACCATTTAAAGAAA-CAATAAGGCTTTCGAAGGTATGGGTGACTAT
267651 AAATAGACTTTTTTTTACCAATGCATAGCTTTTTCTTTATGTTTCTCAAGGTACACATTCAAATC
65 AAATAGAC-TTTTTTTACCAATGCATAGCTTTTTCTTTATGTTTC-CAAGGTACACATTCAAATC
* *
267716 TTAACTATTTTAACCAAGAATGTAAAAATATTCAACTTAAAATCAATTCTGAGATTATAAAACCA
128 TTAACTATTTTAACCAAGAATGTAAAAATATTCAACTTAAAATTAATTATGAGATTATAAAACCA
* * * * * *
267781 TTTAAAACGAGTAATAAGGCTTTCAAAGGCATAGGCGACTAGAAATGA-ACTTTTCTTGCCAATG
193 TTTAAAGCAAGTAATAAGGCTTTCAAAGGCATAGGTGACTATAAAT-ATTCTTTTCTTGCTAATG
** * * * * * * * *
267845 AATGGCTTTTTCTTTATGTGTCCTA-AGGCAAACATTCAAATATAATCTGTTTTAGCCAAAAATG
257 AATGTATTTTGCTTCATGT-TCTTAGAGGCAAACATTCAATTATAATATATTTTAACCAAAAATC
* * * * * * * * *
267909 TAAAAACATTCAACTTAAAATCTATTATGATATTGTAAAATCATTTAAAGCGAGTAGTAAAGCTT
321 TAAAAA-ATTTAACTTAAAATCAATTATGACATTATAAAACCATTGAAATCGAGTAATAATGCTT
* *
267974 TCGAAGGCATGAGTGACTATAAATGGACTTTTCT
385 TCGAAGGCATCAGTGACTATAAATGAACTTTTCT
268008 TGCCATTGAA
Statistics
Matches: 774, Mismatches: 97, Indels: 30
0.86 0.11 0.03
Matches are distributed among these distances:
463 160 0.21
464 239 0.31
465 362 0.47
466 13 0.02
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.34
Consensus pattern (461 bp):
TCAATTATGAGATTGTAAAACCATTTAAAGAAACAATAAGGCTTTCGAAGGTATGGGTGACTATA
AATAGACTTTTTTTACCAATGCATAGCTTTTTCTTTATGTTTCCAAGGTACACATTCAAATCTTA
ACTATTTTAACCAAGAATGTAAAAATATTCAACTTAAAATTAATTATGAGATTATAAAACCATTT
AAAGCAAGTAATAAGGCTTTCAAAGGCATAGGTGACTATAAATATTCTTTTCTTGCTAATGAATG
TATTTTGCTTCATGTTCTTAGAGGCAAACATTCAATTATAATATATTTTAACCAAAAATCTAAAA
AATTTAACTTAAAATCAATTATGACATTATAAAACCATTGAAATCGAGTAATAATGCTTTCGAAG
GCATCAGTGACTATAAATGAACTTTTCTCCCAAATGGATGGCTTTTACTTCACGTTTCCTAAGGT
AGACAT
Found at i:268114 original size:11 final size:11
Alignment explanation
Indices: 268098--268122 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
268088 TTCAACTTTT
268098 TTATGAGATTA
1 TTATGAGATTA
268109 TTATGAGATTA
1 TTATGAGATTA
268120 TTA
1 TTA
268123 AACTATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (11 bp):
TTATGAGATTA
Found at i:268410 original size:347 final size:338
Alignment explanation
Indices: 267586--269565 Score: 1119
Period size: 347 Copynumber: 5.8 Consensus size: 338
267576 AGGTAGACAT
* ** * *
267586 TCAATTATGAGATTGTAAAACCATTTAAAGAAAGCAATAAGGCTTTCGAAGGTATGGGTGACTAT
1 TCAATTATGAGATTATAAAACCATTTAAAGCGAGCAATAAGGCTTTCGAAGGCATAGGTGACTAT
** * * *
267651 AAATAGACTTTT-TT-TTACCAATGCATAGCTTTTTCTTTATGTTTCTCAAGGTACACATTCAAA
66 AAATAGACTTTTCTTGTTATGAATG-ATA---TTTTCTTCATGTTTCCCAAGGTAAACATTCAAA
* * * * *
267714 TCTTAA-CTATTTTAACCAAGAATGTAAAAATATTCAAC--TTAAAATCAATTCTGAGATTATAA
127 T-ATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTTTATAAT--ATTATGAGATTATAA
* * * * * *
267776 AACCATTTAAAACGAGTAATAAGGCTTTCAAAGGCAT-AGGCGACTAGAAATGAACTTTTCTTGC
189 AACTATTTAAAACGAGTAATAAAGCTTTCGAAGGCTTGA-GTGACTACAAATG-ACTTTTCTTGC
* * * * * *
267840 CAATGAATGGCTTTTTCTTTATGTGTCCTAAGGCAAACATTCAAATATAATCTGTTTTAGCCAAA
252 CAATGAATAGCTTTTTCTTCATGTTTCTTAA-GCAGACATTCAAATATAATATGTTTTAGCCAAA
267905 AATGTAAAAACATTCAACTTAAAA
316 AATGTAAAAA-ATTCAACTTAAAA
* * * * * * *
267929 TCTATTATGATATTGTAAAATCATTTAAAGCGAGTAGTAAAGCTTTCGAAGGCAT-GAGTGACTA
1 TCAATTATGAGATTATAAAACCATTTAAAGCGAGCAATAAGGCTTTCGAAGGCATAG-GTGACTA
* ** * * ** *
267993 TAAATGGACTTTTCTTGCCATTGAATAGCT-TTTTCTTCATGTTTCCAAAGACAAACATTCAAAC
65 TAAATAGACTTTTCTTGTTA-TGAAT-GATATTTTCTTCATGTTTCCCAAGGTAAACATTCAAAT
* * * *
268057 ATAATCTGTTTTCACTAAAAATGTAAAAAAATTCAACTTTTTTATGAGATTATTATGAGATTATT
128 ATAATCTATTTTAACCAAAAATGTAAAAAAATTCAAC--TTTTAT-A-A-TATTATGAGATTATA
* * *
268122 AAACTATTTAAAACGAGTAATAAAGCTCTCGAAGGCTTGAGTGACTACAAATAGACTTTTTTTGT
188 AAACTATTTAAAACGAGTAATAAAGCTTTCGAAGGCTTGAGTGACTACAAAT-GACTTTTCTTGC
* * ** * * * * *
268187 CAGTGGATAGCTTTCACATCATATTTCTTGAAGCAGATATTCAATTATAATATATTTTAGCCAAA
252 CAATGAATAGCTTTTTCTTCATGTTTCTT-AAGCAGACATTCAAATATAATATGTTTTAGCCAAA
*
268252 AATGTCAAACAATTCAACTTAAAA
316 AATGT-AAAAAATTCAACTTAAAA
*
268276 TCAATTATGAGATTATAAAACCATTTAAAG-GAAGCCATAAGGCTTTCGAAGGCATAGGTGACTA
1 TCAATTATGAGATTATAAAACCATTTAAAGCG-AGCAATAAGGCTTTCGAAGGCATAGGTGACTA
* * *
268340 TAAATAGACTTTTCTTGTTAGTGAATGGTATTTTCTTCATGTTTCCCAAGGTAGACATTAAAATA
65 TAAATAGACTTTTCTTGTTA-TGAATGATATTTTCTTCATGTTTCCCAAGGTAAACATTCAAATA
* **
268405 TAATCTATTCTAACCAAAAATGTAAAAACAA-TCAACTTAAAATAA-ATTATGAGATTATAAAAC
129 TAATCTATTTTAACCAAAAATGTAAAAA-AATTCAACTT-TTATAATATTATGAGATTATAAAAC
* * * * * *
268468 TATTTAGAGCGAGTAATAACGCTTTTGAA--CATATGAGTTACTATAAATGGACTTTTCTTGCCA
192 TATTTAAAACGAGTAATAAAGCTTTCGAAGGC-T-TGAGTGACTACAAAT-GACTTTTCTTGCCA
* * * *
268531 ATGAATAGCTTTTTCTTCATGTTT-TCCAAGACAGACATTTAAACATAATTTGTTTTCA-CCAAA
254 ATGAATAGCTTTTTCTTCATGTTTCT-TAAG-CAGACATTCAAATATAATATGTTTT-AGCCAAA
* * *
268594 AATGTAAAAAAAATTTAGCTTATAA
316 AATGT--AAAAAATTCAACTTAAAA
* * * * * * *
268619 TCAATTGTGAGATTATTAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGCTTAAGTGATTAT
1 TCAATTATGAGATTATAAAACCATTTAAAGCGAGCAATAAGGCTTTCGAAGGCATAGGTGACTAT
*** * * * * * *
268684 AAATAGACTTTTCTTACCAGTGGATGGCT-TTTACTTCATGCTTCCTGAA-GCAAACATTC-AAT
66 AAATAGACTTTTCTTGTTA-TGAAT-GATATTTTCTTCATGTTTCC-CAAGGTAAACATTCAAAT
* * * * * * * * *
268746 CGTAATATATTTTAACCATAAATATAAAACAATTTAAC--TTAAAACCAATTATGATATTATAAA
128 -ATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTTTATAA--TATTATGAGATTATAAA
* *** * * ** * * * * *
268809 ACCATTTAAAGTAAGCAATAAGGCTTTTAAAGTCAT-AGGCGACTA-TAATAGACTTTTCTTGCT
190 ACTATTTAAAACGAGTAATAAAGCTTTCGAAGGCTTGA-GTGACTACAAAT-GACTTTTCTTGCC
* * * * * * * * *
268872 AATGAAT-GATTTTTTCCTCACGTTCCCCTAGGTAAACATTCAAATATAATATGTTTTAACCAAA
253 AATGAATAG-CTTTTTCTTCATGTT-TCTTAAGCAGACATTCAAATATAATATGTTTTAGCCAAA
*
268936 AATGTAAAAAATTTAACTTAAAAA
316 AATGTAAAAAATTCAACTT-AAAA
* * ** * * * * * * *
268960 T-AAATATGAGATTATAAAACCACTTAAAGCGAATAATAAAGCTTTTGAGGGC-TTGAATGATTG
1 TCAATTATGAGATTATAAAACCATTTAAAGCGAGCAATAAGGCTTTCGAAGGCATAG-GTGACTA
* ** * * ** * * * * *
269023 TAAATAGACTTTTCTAGCAATGGATGGCT-TTCACTTCATATTTCCTGAA-GTAGACATTTAATT
65 TAAATAGACTTTTCTTGTTATGAAT-GATATTTTCTTCATGTTTCC-CAAGGTAAACATTCAAAT
* * * * * * *
269086 ATAATATTTTTTAACAAAAAATGTGAAAAAACTCAAC---T-TAA-A--ATCA-ATTATAAGA-T
128 ATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTTTATAATATTATGAGATTATAAAACT
* * * ** * * * * *
269142 -TATAAAACCA-T-ATAACGCTTGT-GAAGGCAAGGGTCATTATAAATGGACTTTTCTTACCAAT
193 ATTTAAAACGAGTAATAAAGCTT-TCGAAGGCTTGAGTGACTACAAAT-GACTTTTCTTGCCAAT
* * * * * * * *
269203 GAAT-GGTTTTTATTTCAT-ATTCTCCAAGGCAAACATTCAAATATTATTTGTTTTAACCAAAAA
256 GAATAGCTTTTT-CTTCATGTTTCT-TAA-GCAGACATTCAAATATAATATGTTTTAGCCAAAAA
* * *
269266 TATAAAAAAATCTAATTTAAAA
318 TGTAAAAAATTC-AACTTAAAA
* * * * * * * * *
269288 TCAATTAAGAGATTAGAAAACTATTTAAAGCAAGTAATAAGGCTTTCAAAGGC-TTGAATGACAA
1 TCAATTATGAGATTATAAAACCATTTAAAGCGAGCAATAAGGCTTTCGAAGGCATAG-GTGACTA
* * * * * * *
269352 TAAATAGACTTTGCTTGCTAAT-ATATGGCT-TTTGCCTT-ATGTTTCCTAAAGCAAACATTCAA
65 TAAATAGACTTTTCTTG-TTATGA-AT-GATATTT-TCTTCATGTTTCCCAAGGTAAACATTCAA
* * * * * * * * *
269414 TTATTATATATTTTAACCACAAATAT-AAAAAATTTAAC--TTAAAATCAATTACGAGTTTATAA
126 ATATAATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTTTATAAT--ATTATGAGATTATAA
* * * * * * * *
269476 AACCATTTAAAGCAAGTAAT-AAGATTTTTGAAGGCAT-AGGTGGCTATAAATGGACTTTTCTTG
189 AACTATTTAAAACGAGTAATAAAG-CTTTCGAAGGCTTGA-GTGACTACAAAT-GACTTTTCTTG
*
269539 CCAATGAATGGCTTTTTCTTCATGTTT
251 CCAATGAATAGCTTTTTCTTCATGTTT
269566 NNNNNNNNNN
Statistics
Matches: 1276, Mismatches: 286, Indels: 151
0.74 0.17 0.09
Matches are distributed among these distances:
326 1 0.00
327 24 0.02
328 72 0.06
329 85 0.07
330 49 0.04
331 13 0.01
332 3 0.00
334 2 0.00
336 2 0.00
337 9 0.01
338 1 0.00
339 69 0.05
340 89 0.07
341 59 0.05
342 246 0.19
343 251 0.20
344 8 0.01
345 5 0.00
346 12 0.01
347 263 0.21
348 12 0.01
349 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.35
Consensus pattern (338 bp):
TCAATTATGAGATTATAAAACCATTTAAAGCGAGCAATAAGGCTTTCGAAGGCATAGGTGACTAT
AAATAGACTTTTCTTGTTATGAATGATATTTTCTTCATGTTTCCCAAGGTAAACATTCAAATATA
ATCTATTTTAACCAAAAATGTAAAAAAATTCAACTTTTATAATATTATGAGATTATAAAACTATT
TAAAACGAGTAATAAAGCTTTCGAAGGCTTGAGTGACTACAAATGACTTTTCTTGCCAATGAATA
GCTTTTTCTTCATGTTTCTTAAGCAGACATTCAAATATAATATGTTTTAGCCAAAAATGTAAAAA
ATTCAACTTAAAA
Found at i:272727 original size:171 final size:170
Alignment explanation
Indices: 272316--272732 Score: 444
Period size: 171 Copynumber: 2.4 Consensus size: 170
272306 NNNNNNNNNN
* * * ** *
272316 AGGTGGCTATAAATGGACTTTTCTTGCCAATGAATGGCTTTTTCTTCATGTTTTCAAAGGCAAAA
1 AGGTGACTATAAATGGACTTTTCTTACCAATGAATGGCTTTTGCTTCATGTTTT-TGAGGCAAAC
* * * * * * *
272381 ATTCAAATATAATCTATGTTAACCAAAAATGTAAAAGAATTAAACTTAAAATCATTTATGAGAAT
65 ATTCAATTATAATATATGTTAAACAAAAATATAAAAAAATTAAACTTAAAATCAATTATGACAAT
** *
272446 ATAAAATTATTTAAAACGAGTAATAAGGCTTTCGAAGGCAT
130 ATAAAACCATTTAAAACGAGTAATAAGACTTTCGAAGGCAT
*** * * *
272487 AGGTGACTATAAATATTCTTTTCTTACCAATGAAT-GCATTTTGCTTCACGTTTTTAGCGGCAGA
1 AGGTGACTATAAATGGACTTTTCTTACCAATGAATGGC-TTTTGCTTCATGTTTTT-GAGGCAAA
* * * * *
272551 CATTCAATTATAATATATTTTAAACAAAACTATAAAAAAATTCAACTTAAAATTAATTATGACAT
64 CATTCAATTATAATATATGTTAAACAAAAATATAAAAAAATTAAACTTAAAATCAATTATGACAA
* * * *
272616 TATAAAGCCATTTAAAGCGAGTAATAATACTTTTGAAGGCAT
129 TATAAAACCATTTAAAACGAGTAATAAGACTTTCGAAGGCAT
* * * *
272658 CA-GTGACTATAAATGGACTTTT-TTCCCTCATGGATGGCTTTTGCTTCATGTTTCTTGAGGTAA
1 -AGGTGACTATAAATGGACTTTTCTTACC-AATGAATGGCTTTTGCTTCATGTTT-TTGAGGCAA
272721 ACATTCAATTAT
63 ACATTCAATTAT
272733 GAGATTGTAA
Statistics
Matches: 199, Mismatches: 41, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
170 6 0.03
171 188 0.94
172 5 0.03
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (170 bp):
AGGTGACTATAAATGGACTTTTCTTACCAATGAATGGCTTTTGCTTCATGTTTTTGAGGCAAACA
TTCAATTATAATATATGTTAAACAAAAATATAAAAAAATTAAACTTAAAATCAATTATGACAATA
TAAAACCATTTAAAACGAGTAATAAGACTTTCGAAGGCAT
Found at i:276490 original size:512 final size:510
Alignment explanation
Indices: 273015--277256 Score: 1830
Period size: 512 Copynumber: 8.3 Consensus size: 510
273005 TCCGAGCCAA
* * * *
273015 ACATTCAATTATAATCTA-TTTAACT-AAAAATGTAAAATAAAATTCAATTTAGAATCAATTATA
1 ACATTCAATTATAATTTATTTTAA-TAAAAAATGT-AAA-AAAATTCAACTTAAAATCAATTATG
* * * * * * * * *
273078 AGACTATAAAACAATTTAAAGTAAGTAATAAGGCTTTC-AAAGGTATCGGTGACTATAAATAGAC
63 ATATTATAAAACCATTTAAAGCAAGTGATAAAGCTTTCGAAA-GCATGGGTGACTATAAATGGAC
** * * * * * * * * * * *
273142 TTTTCTTGTTAATGAATAGCTTTTTATTCACGTTTCTCATG--GCAAACATTTAAGTATAAT-AT
127 TTTTCTTGCAAATGAATGGCATTTTCTTTA--TATGTCTTGACGCAGACATTCAATTATAATAAA
* ** * * * * * **
273204 TTTTGAATAAAAAATGTAAAAAAATTTAACTTAAAATCAATTATGATATTATAAAATTATTTAAA
190 TTCT-AACCAGAAATATAAAAAAA-TCAACTTAAAATCAATTATGACATTCTAAAACCATTTAAA
* * ** ** * *
273269 GC-AAGTAATAA-GTCTTTTGAAGGC-TTAGGTGACCATAAACGGACTTTTCT-TACTAGTGGAT
253 GCTAA-TAATAATG-CTTTCGAAGGCATGA-GTGAATATAAATAGACTTTTCTCTAC-AATAGAT
* * * ** * * * * * * * * *
273330 AGCTTTTGCTTCACGTTTCTCAAAGTAGACATTCGATTGTAATATATTCTAACTAAAAATGTAAA
314 AACTTTTACTTCATGTTTCTTGAGGCAGATATTCAATTGTAACATATTTTAACCAACAATATAAA
* * * * **
273395 AAAGA-TCAACTT-AAATTAATTATGAGATTATAAAACTATTTAACGCAAGTAATAA-CATTTTC
379 AAA-ATTCAACTTAAAATCAATTATGAGCTTATAAAACCATTTAAAGTGAGTAATAAGC--TTTC
* * * * * * * * * ** * *
273457 GAAGTCATGGGTGACTATAAATGAACTTTTCTTGCGAATGAAT-AGTTTATTTTTCACGTTTCCT
441 GAAGGCAT-AGTGACAATAAATGGACTTTCCTTACCACTGAATGACTTT-TACTTCATGTTTCCC
273521 AAGGCA-
504 AAGGCAG
* * * * * *
273527 ACATTCTAA-TATAATATGTTTTAA-CAAAAATATAAAAGAATACAACTTAAAATCAATTATGAT
1 ACATTC-AATTATAATTTATTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAT
* * * * * * *
273590 ATTATAAAACCATTTAAAGCGACTAATAACACCTTT-GAAGGC-TCGAGTGACTATAAATAGACT
65 ATTATAAAACCATTTAAAGCAAGTGATAA-AGCTTTCGAAAGCAT-GGGTGACTATAAATGGACT
* * * * * * *
273653 TTTCTTGCCAATGGAA-GG--TTTTGCTTCATGT-TTTTGAAAGCAAACATTCAATTATAATATA
128 TTTCTTGCAAAT-GAATGGCATTTT-CTTTATATGTCTTG-ACGCAGACATTCAATTATAATAAA
* * * * * * * * *
273714 TTTTAACTA-ACAATGTAAGAAAATTCAAATTTAAAATCAATTATAAAATTATGAAACCATTTAA
190 TTCTAACCAGA-AATATAA-AAAAATC-AACTTAAAATCAATTATGACATTCTAAAACCATTTAA
** * * * * * * **
273778 AGAGAATAATTA-GACTTTCGAAGGCGTGGGTGACTATACATTGACTTTTCT-TGTTAAT-GAAT
252 AGCTAATAATAATG-CTTTCGAAGGCATGAGTGAATATAAATAGACTTTTCTCT-ACAATAG-AT
** * ** *** ** * * * * * * * *
273840 GTCTTTTTCTTCACATTTCCCAATATC-GACATTTAAATATAACCTATTTTAACTAAAAATGTAA
314 AACTTTTACTTCATGTTTCTTGA-GGCAGATATTCAATTGTAACATATTTTAACCAACAATATAA
* * ********** * *
273904 AAAAAATCAAGTTAAAATCAATTATNNNNNNNNNNAACCATTTAAAGCGAGTAATAAAGGTTTCG
378 AAAAATTCAACTTAAAATCAATTATGAGCTTATAAAACCATTTAAAGTGAGTAAT-AAGCTTTCG
* ** ** *** * * * * **
273969 AAGGCTTAAGTGATTATAAATGGACTTTTATTGTGAGT-AGATGGCTTTTGCTTCACGTTTTCTG
442 AAGGCAT-AGTGACAATAAATGGACTTTCCTTACCACTGA-ATGACTTTTACTTCATG-TTTCCC
*
274033 AA-GCAA
504 AAGGCAG
* * *** * * * *
274039 ACACTCAATTATAATATATTTTAACCCAAAATGTGAAAAAATTCAACTTTAAATCAAGTATGAGA
1 ACATTCAATTATAATTTATTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGATA
* * * * * * ** **
274104 TTATTAAACCATTTAATGCAAGTAATAAGGCTTTTGAAGGCATAAGTGAGAATAAATGGACTTTT
66 TTATAAAACCATTTAAAGCAAGTGATAAAGCTTTCGAAAGCATGGGTGACTATAAATGGACTTTT
* * * * * * * *** *
274169 CTTGCTAATGGATGGC-TTTTGCTTCATATTTCTCGAGGCAGACAATCAATTATAATTTGTTTTA
131 CTTGCAAATGAATGGCATTTT-CTTTATATGTCTTGACGCAGACATTCAATTATAATAAATTCTA
* * ** * * * * * *
274233 ACTAAAAATGCAAACAAATTTAACTTGAAAAT-AATTATGTGC-TTATAAAACTATTTAAAGCGA
195 ACCAGAAATATAAA-AAAATCAACTT-AAAATCAATTATG-ACATTCTAAAACCATTTAAAGCTA
* * * * * * * *
274296 GTAATAAGGCTTTCGAAAGCTTGAATGACA-ATAAATGGACTTTT-TTTACCAAT-GAATAGCTT
257 ATAATAATGCTTTCGAAGGCATGAGTGA-ATATAAATAGACTTTTCTCTA-CAATAG-ATAACTT
* * ** *** * * * * * * ** * ** *
274358 TTGCTTAACATTTCCAAAAGCATACATTTAATTCTAATATATTTTAATGAAAAACGT-AAAGAAT
319 TTACTTCATGTTTCTTGAGGCAGATATTCAATTGTAACATATTTTAACCAACAATATAAAAAAAT
* * * ** * * * *
274422 TCAACTTAAAATTAATTATGAGATTATAAAATCATTTAAAGCAAATGATAAGACTTTTGAATGCA
384 TCAACTTAAAATCAATTATGAGCTTATAAAACCATTTAAAGTGAGTAATAAG-CTTTCGAAGGCA
* * * * * * ** * * ** *
274487 TGGGTGACTATAAATGGACTTTTCTCACCAATAAATGGTTTTTTCTTCATATTTCTTAAGGTAG
448 T-AGTGACAATAAATGGACTTTCCTTACCACTGAATGACTTTTACTTCATGTTTCCCAAGGCAG
* * * * *
274551 ACAGTCAACTATAATATATTTTAACT-AGAAATAG-AAAAAAATTTAACTTAAAATCAATTATGA
1 ACATTCAATTATAATTTATTTTAA-TAAAAAAT-GTAAAAAAATTCAACTTAAAATCAATTATGA
* ** * * * * * * * * * *
274614 CATTCCAAAATCATTTAAAGCTAGTAATAATGTTTTCGAAGGCATGAGTGAATATAAATAGACTC
64 TATTATAAAACCATTTAAAGCAAGTGATAAAGCTTTCGAAAGCATGGGTGACTATAAATGGACTT
* * * * * * * ** * * ** *
274679 TTCTTCCCAATGGATGAC-TTTTACTTCACATTTCCAGAGGGAGACATTCAATTATAATCTATTT
129 TTCTTGCAAATGAATGGCATTTT-CTTTATATGTCTTGACGCAGACATTCAATTATAATAAATTC
* * * * * *
274743 TAACCAAAAATAAAAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACTATTTAAAG-T
193 TAACCAGAAAT-ATAAAAAAA-TCAACTTAAAATCAATTATGACATTCTAAAACCATTTAAAGCT
* * * * * * * * * **
274807 GAGTAATAAGGCTTTCGAAGGTATAAGTGACTATAAATGGACTTTTC-GTACCATTAAATGTCTT
256 -AATAATAATGCTTTCGAAGGCATGAGTGAATATAAATAGACTTTTCTCTA-CAATAGATAACTT
* * * * * * *********** * * *
274871 TTTCTTCATGTTTCCTAAGGTAAACATTCANNNNNNNNNNGTTTTAACTAAAAATGTAAAAAAAT
319 TTACTTCATGTTTCTTGAGGCAGATATTCAATTGTAACATATTTTAACCAACAATATAAAAAAAT
* *** * * *
274936 TCAACTTTAAATTGGTTATGA-CATTATAAAATCATTTAAAGCGAGTAATAAGACTTTTGAAGGC
384 TCAACTTAAAATCAATTATGAGC-TTATAAAACCATTTAAAGTGAGTAATAAG-CTTTCGAAGGC
* * * * * * * * * * * * *
275000 TTGACTGACTATAAATAGATTTTTCTTGCTAATGGAT-AGCTTTTGCTTCATGTTTTCCTAA-GA
447 AT-AGTGACAATAAATGGACTTTCCTTACCACTGAATGA-CTTTTACTTCATG-TTTCCCAAGGC
*
275063 AA
509 AG
* * * * * * * *
275065 ACATTCAATTATAGTATATTTTAATGAAAAATGTAAGAGAATTCAACTTAAAATAAATTATAAGA
1 ACATTCAATTATAATTTATTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGATA
* * * *
275130 TTATAAAACCATTTAAAACAAGT-ATTAAAGCTTT-TAAAGGCATGGGTGACTAT-CATCAGACT
66 TTATAAAACCATTTAAAGCAAGTGA-TAAAGCTTTCGAAA-GCATGGGTGACTATAAAT-GGACT
* * * * * *** * * * **
275192 TTTTTTGGC-AATGAATGG-GTTTGTCTTCATGTTTCCCAAAGTAGACATTCAA-AACTAATCTA
128 TTTCTT-GCAAATGAATGGCATTT-TCTTTATATGTCTTGACGCAGACATTCAATTA-TAATAAA
* * ** * *
275254 TTTTATCCA-AGAATATAAAAAAATTCAACTTAAAATCAATTATGTGATTATAAAACCATATAAA
190 TTCTAACCAGA-AATATAAAAAAA-TCAACTTAAAATCAATTATGACATTCTAAAACCATTTAAA
* * * * * * *
275318 GCGAGTAATAATGCTTTCGAAGGCTTGTGTGACTATAAATGGACTTTTCT-TGTCAAT-GA-AGG
253 GCTAATAATAATGCTTTCGAAGGCATGAGTGAATATAAATAGACTTTTCTCT-ACAATAGATA--
* * ** * * * *
275380 GCTTTCACTTC-TCGTTTCTCAAGGTAGACATTCAATTCAATTATAATATATTTTAACTAA-AAG
315 ACTTTTACTTCAT-GTTTCTTGAGGCAG--A-T--ATTCAATTGTAACATATTTTAACCAACAA-
* * * **********
275443 TGA-AAAAGAATTCAA-TCTAAAATCAATTACGAGATTATAAAANNNNNNNNNNTGAGTAATAAG
373 T-ATAAAAAAATTCAACT-TAAAATCAATTATGAGCTTATAAAACCATTTAAAGTGAGTAATAA-
* * ** ** * *** * * *
275506 GCTTTCAAAGGCATGGGTGACTGTAAATAAACTTTTCTTGTAAATGAATGGCTTTTCCTTCATGT
435 GCTTTCGAAGGCAT-AGTGACAATAAATGGACTTTCCTTACCACTGAATGACTTTTACTTCATGT
* *
275571 TTCCAAAGGCAA
499 TTCCCAAGGCAG
* * *
275583 ACATTCAATTATAATCTATTTTAACAAAAAATGTAGAAACAAATT-AGCTTAAAATCAATTATGA
1 ACATTCAATTATAATTTATTTTAATAAAAAATGTA-AAA-AAATTCAACTTAAAATCAATTATGA
* ********** * * * * * * ** * *
275647 GATTATNNNNNNNNNNAAAGCGAGTAATAAGGATTTCGAAGGCTTATGTAACTATAAATGGACGT
64 TATTATAAAACCATTTAAAGCAAGTGATAAAGCTTTCGAAAGCATGGGTGACTATAAATGGACTT
* * * * * ********* *
275712 TTCTTACGAGTG-ATGGC-TTTTGC-TT-CATGTTTTCNNNNNNNNNNATTCAATTATAATATAT
129 TTCTTGCAAATGAATGGCATTTT-CTTTATATGTCTT--GACGCAGACATTCAATTATAATAAAT
* * * ** * * * * *
275773 TTTAATC-GTAAATATAAAAAAATTCAATTTAAAATCAACAATGAGATTATAAAATCAGTTAACG
191 TCTAACCAG-AAATATAAAAAAA-TCAACTTAAAATCAATTATGACATTCTAAAACCATTTAAAG
* * * * * * *
275837 C-AAGTAAT-ACGACTTTTGAAGGCAT-AG-GTAACTGTAAATGGACTTTT-TTTGCTAATGGAT
254 CTAA-TAATAATG-CTTTCGAAGGCATGAGTG-AA-TATAAATAGACTTTTCTCTAC-AATAGAT
** * * * * * * * *
275897 GGCTTTTGCTTCATGTTTCTTGAGGCAGACAATCAATTATAATATGTTTTAACCAAAAATGTAAA
314 AACTTTTACTTCATGTTTCTTGAGGCAGATATTCAATTGTAACATATTTTAACCAACAATATAAA
* * * * *
275962 TAAATTCAACTTAAAATTAATTATAAGCTTATAAAACTATTTAAAGTGAGTAATAAAGCTTTCAA
379 AAAATTCAACTTAAAATCAATTATGAGCTTATAAAACCATTTAAAGTGAGTAAT-AAGCTTTCGA
* * * * * * *
276027 AGGCTTGAGTGGCAATAGATGGACTTTCCTTACCGA-TGGATGACTGTTGCTTCACGTTTCCCAA
443 AGGCAT-AGTGACAATAAATGGACTTTCCTTACC-ACTGAATGACTTTTACTTCATGTTTCCCAA
* *
276091 AGCAT
506 GGCAG
* * * * * * *
276096 ACATTTAATTGTAATATATTTTAACAAAAAACGTAAAAAAACTCAACTTAAAATCAATTATGAGA
1 ACATTCAATTATAATTTATTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGATA
* *
276161 TTATAAAACAATTTAAAGCAAGTGATAAAGCTTTCGAAAGCATGGGTGACTATAAATGAACTTTT
66 TTATAAAACCATTTAAAGCAAGTGATAAAGCTTTCGAAAGCATGGGTGACTATAAATGGACTTTT
* * *
276226 CTTGTAAATGAATGGCATTTTCTTTATATTTCTTGA-GACAGACATTCAATTATAATATATT-TA
131 CTTGCAAATGAATGGCATTTTCTTTATATGTCTTGACG-CAGACATTCAATTATAATAAATTCT-
*
276289 AACTTA-AAATATAAAAAAATCAACTTAAAATCAATTATGACATTCTAAAACCATTTAAAGCTAA
194 AAC-CAGAAATATAAAAAAATCAACTTAAAATCAATTATGACATTCTAAAACCATTTAAAGCTAA
* * *
276353 TAATAATGCTTTCGAAGGTATGAGTGCATATAAATAGACTTTTCTCTCCAATAGATAACTTTTAC
258 TAATAATGCTTTCGAAGGCATGAGTGAATATAAATAGACTTTTCTCTACAATAGATAACTTTTAC
* ** *
276418 TTTATGTTTCTCAAGGCAGATATTCAATTGTAACATATTTTTACCAACAATATAAAAAAATTCAA
323 TTCATGTTTCTTGAGGCAGATATTCAATTGTAACATATTTTAACCAACAATATAAAAAAATTCAA
* *
276483 CTTAAAATCAATTATGA-CATTATAAAACCATTTAAAGTGAGTAGTAAGACTTTCGAGGGCATAG
388 CTTAAAATCAATTATGAGC-TTATAAAACCATTTAAAGTGAGTAATAAG-CTTTCGAAGGCATA-
* * *
276547 GTGACTATAAATGGA-TTTCTCTTCCCACTGAATGACTTTTACTTCATGTCTCCCAAGGCAG
450 GTGACAATAAATGGACTTTC-CTTACCACTGAATGACTTTTACTTCATGTTTCCCAAGGCAG
* * *
276608 ACCTTCAATTATAATTTTTTTTAATAAAAAATGTAAAACAATTCAACTTAAAATCAATTATGATA
1 ACATTCAATTATAATTTATTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGATA
* *
276673 TTATAAAACCATTTAAAGCAAGTGATAAGGCTTTCGAAAGTATGTGG-GACTATAAATGGACTTT
66 TTATAAAACCATTTAAAGCAAGTGATAAAGCTTTCGAAAGCATG-GGTGACTATAAATGGACTTT
* * *
276737 TCTCGCGAATGAATGGCTTTTTCTTTATATGTCTTGACGCAGACATTCAATTATAATAAATTCTA
130 TCTTGCAAATGAATGGCATTTTCTTTATATGTCTTGACGCAGACATTCAATTATAATAAATTCTA
* * * * *
276802 ACCAGAAATATAAAAAATTCAACTTAAATTCAATTATGACATTTTAAAACTATTTAAAGCTAGTA
195 ACCAGAAATATAAAAAAATCAACTTAAAATCAATTATGACATTCTAAAACCATTTAAAGCTAATA
* * * * **
276867 ATAATGCTTTCGAAGGCATGAGTTAATATAAATAGACTTTTCTTTACGATGGATGGCTTTTACTT
260 ATAATGCTTTCGAAGGCATGAGTGAATATAAATAGACTTTTCTCTACAATAGATAACTTTTACTT
* * * *
276932 CACGTTTCTTGAGGTAGACT-TTCAACTGTAATC-TATTTTAACCAACAATAT---AAAATTTAA
325 CATGTTTCTTGAGGCAGA-TATTCAATTGTAA-CATATTTTAACCAACAATATAAAAAAATTCAA
* * * * * * *
276992 CCTAAAATCAATTATGAGATTATAAAGCCATTTTAAGCGAATAATTAGGCTTTCGAAGGCATAAG
388 CTTAAAATCAATTATGAGCTTATAAAACCATTTAAAGTGAGTAA-TAAGCTTTCGAAGGCAT-AG
* * * * *
277057 TAACAATAAATGGACCTTT-CTTACCACTGAATGGCTTTTACTTCATATTTCCTAAGGTAG
451 TGACAATAAATGGA-CTTTCCTTACCACTGAATGACTTTTACTTCATGTTTCCCAAGGCAG
* * * *
277117 ATATTCAATTATAATTTGTTTTAATAAAAAATATAAAAAAATTCAACTTTAAATCAATTATGATA
1 ACATTCAATTATAATTTATTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGATA
* * * * ** *
277182 TTATAAAACCATTTAAAGCGAGTAAT-AAGTCTTTTGAAGGCACAGGTGACCATAAATGGACTTT
66 TTATAAAACCATTTAAAGCAAGTGATAAAG-CTTTCGAAAGCATGGGTGACTATAAATGGACTTT
*
277246 TCTTGCTAATG
130 TCTTGCAAATG
277257 GACGGGTTTT
Statistics
Matches: 2888, Mismatches: 694, Indels: 299
0.74 0.18 0.08
Matches are distributed among these distances:
506 3 0.00
507 2 0.00
508 9 0.00
509 256 0.09
510 217 0.08
511 119 0.04
512 930 0.32
513 654 0.23
514 318 0.11
515 19 0.01
516 4 0.00
517 19 0.01
518 264 0.09
519 65 0.02
520 9 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (510 bp):
ACATTCAATTATAATTTATTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGATA
TTATAAAACCATTTAAAGCAAGTGATAAAGCTTTCGAAAGCATGGGTGACTATAAATGGACTTTT
CTTGCAAATGAATGGCATTTTCTTTATATGTCTTGACGCAGACATTCAATTATAATAAATTCTAA
CCAGAAATATAAAAAAATCAACTTAAAATCAATTATGACATTCTAAAACCATTTAAAGCTAATAA
TAATGCTTTCGAAGGCATGAGTGAATATAAATAGACTTTTCTCTACAATAGATAACTTTTACTTC
ATGTTTCTTGAGGCAGATATTCAATTGTAACATATTTTAACCAACAATATAAAAAAATTCAACTT
AAAATCAATTATGAGCTTATAAAACCATTTAAAGTGAGTAATAAGCTTTCGAAGGCATAGTGACA
ATAAATGGACTTTCCTTACCACTGAATGACTTTTACTTCATGTTTCCCAAGGCAG
Found at i:277270 original size:171 final size:170
Alignment explanation
Indices: 272800--277258 Score: 2832
Period size: 171 Copynumber: 26.1 Consensus size: 170
272790 NNNNNNNNNN
* * * * * * * * *
272800 TTCTTGCCAATGGATAGCTTTTTCTTCATGTTTTCC-AAGGTAGACATTCAAATCTTATCTGTGT
1 TTCTTGCTAATGGATGGCTTTTGCTTCATG-TTTCCTAAGGCAGACATTCAATTATAATATAT-T
* * ********** **
272864 TTAACCAAGAATGTAAAAAAATTCAACTTAAAATCAATTATGANNNNNNNNNNCCATTTAAAATG
64 TTAA-TAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCG
* * ** * *
272929 AGTAATAAGGCTTTTGAAGGTATAGGCAACTTTAAATGGTCTT
128 AGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTT
* * * * * * *
272972 TTCTTGGC-AAT-GAGTGACTTTT-TTTACACGTTTTCC-GAGCCAAACATTCAATTATAATCTA
1 TTCTT-GCTAATGGA-TGGCTTTTGCTT-CATG-TTTCCTAAGGCAGACATTCAATTATAATATA
* * * * *
273033 -TTTAACTAAAAATGTAAAATAAAATTCAATTTAGAATCAATTATAAGACTATAAAACAATTTAA
62 TTTTAA-TAAAAATGT-AAA-AAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
** * * * *
273097 AGTAAGTAATAAGGCTTTCAAAGGTATCGGTGACTATAAATAGACTT
124 AGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTT
* * * ** * * * * *
273144 TTCTTGTTAATGAATAGCTTTTTATTCACGTTT-CTCATGGCAAACATTTAAGTATAATAT-TTT
1 TTCTTGCTAATGGATGGCTTTTGCTTCATGTTTCCT-AAGGCAGACATTCAATTATAATATATTT
* * ** *
273207 TGAATAAAAAATGTAAAAAAATTTAACTTAAAATCAATTATGATATTATAAAATTATTTAAAGCA
65 T-AAT-AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCG
* * * * *
273272 AGTAATAAGTCTTTTGAAGGCTTAGGTGACCATAAACGGACTT
128 AGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTT
* * * * * * * * *
273315 TTCTTACTAGTGGATAGCTTTTGCTTCACGTTT-CTCAAAGTAGACATTCGATTGTAATATATTC
1 TTCTTGCTAATGGATGGCTTTTGCTTCATGTTTCCT-AAGGCAGACATTCAATTATAATATATTT
* * * *
273379 TAACTAAAAATGTAAAAAAGA-TCAACTT-AAATTAATTATGAGATTATAAAACTATTTAACGCA
65 TAA-TAAAAATGTAAAAAA-ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCG
*** * * *
273442 AGTAATAACATTTTCGAAGTCATGGGTGACTATAAATGAACTT
128 AGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTT
* * * ** * *
273485 TTCTTGCGAATGAATAG-TTTATTTTTCACGTTTCCTAAGGCA-ACATTCTAA-TATAATATGTT
1 TTCTTGCTAATGGATGGCTTT-TGCTTCATGTTTCCTAAGGCAGACATTC-AATTATAATATATT
* * * * *
273547 TTAACAAAAATATAAAAGAATACAACTTAAAATCAATTATGATATTATAAAACCATTTAAAGCGA
64 TTAATAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGA
* ** * *
273612 CTAATAACACCTTT-GAAGGC-TCGAGTGACTATAAATAGACTT
129 GTAATAA-GGCTTTCGAAGGCATAG-GTGACTATAAATGGACTT
* * * * *
273654 TTCTTGCCAATGGAAGG-TTTTGCTTCATGTTT-TTGAAAGCAAACATTCAATTATAATATATTT
1 TTCTTGCTAATGGATGGCTTTTGCTTCATGTTTCCT-AAGGCAGACATTCAATTATAATATATTT
* * * * * * *
273717 TAACTAACAATGTAAGAAAATTCAAATTTAAAATCAATTATAAAATTATGAAACCATTTAAAGAG
65 TAA-TAAAAATGTAAAAAAATTC-AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCG
* * * * * * *
273782 AATAATTAGACTTTCGAAGGCGTGGGTGACTATACATTGACTT
128 AGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTT
* * * * ** * ** * * **
273825 TTCTTGTTAATGAATGTCTTTTTCTTCACATTTCCCAATATC-GACATTTAAATATAACCTATTT
1 TTCTTGCTAATGGATGGCTTTTGCTTCATGTTTCCTAA-GGCAGACATTCAATTATAATATATTT
* * **********
273889 TAACTAAAAATGTAAAAAAAATCAAGTTAAAATCAATTATNNNNNNNNNNAACCATTTAAAGCGA
65 TAA-TAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGA
* * *
273954 GTAATAAAGG-TTTCGAAGGCTTAAGTGATTATAAATGGACTT
129 GTAAT-AAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTT
* * * * * * *
273996 TTATTG-TGAGTAGATGGCTTTTGCTTCACGTTTTCTGAA-GCAAACACTCAATTATAATATATT
1 TTCTTGCT-AATGGATGGCTTTTGCTTCATGTTTCCT-AAGGCAGACATTCAATTATAATATATT
** * * * * * *
274059 TTAACCCAAAATGTGAAAAAATTCAACTTTAAATCAAGTATGAGATTATTAAACCATTTAATGCA
64 TTAA-TAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCG
* * **
274124 AGTAATAAGGCTTTTGAAGGCATAAGTGAGAATAAATGGACTT
128 AGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTT
* * * * *
274167 TTCTTGCTAATGGATGGCTTTTGCTTCATATTT-CTCGAGGCAGACAATCAATTATAATTTGTTT
1 TTCTTGCTAATGGATGGCTTTTGCTTCATGTTTCCT-AAGGCAGACATTCAATTATAATATATTT
* * * * * *
274231 TAACTAAAAATGCAAACAAATTTAACTTGAAAAT-AATTATGTGCTTATAAAACTATTTAAAGCG
65 TAA-TAAAAATGTAAAAAAATTCAACTT-AAAATCAATTATGAGATTATAAAACCATTTAAAGCG
* * * *
274295 AGTAATAAGGCTTTCGAAAGC-TTGAATGACAATAAATGGACTT
128 AGTAATAAGGCTTTCGAAGGCATAG-GTGACTATAAATGGACTT
* * * * * * ** * * * * *
274338 TTTTTACCAATGAATAGCTTTTGCTTAACATTTCCAAAAGCATACATTTAATTCTAATATATTTT
1 TTCTTGCTAATGGATGGCTTTTGCTTCATGTTTCCTAAGGCAGACATTCAATTATAATATATTTT
* * * * * *
274403 AATGAAAAACGT-AAAGAATTCAACTTAAAATTAATTATGAGATTATAAAATCATTTAAAGCAAA
66 AAT-AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAG
* * * * *
274467 TGATAAGACTTTTGAATGCATGGGTGACTATAAATGGACTT
130 TAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTT
** * ** * * * * * * *
274508 TTCTCACCAATAAATGGTTTTTTCTTCATATTTCTTAAGGTAGACAGTCAACTATAATATATTTT
1 TTCTTGCTAATGGATGGCTTTTGCTTCATGTTTCCTAAGGCAGACATTCAATTATAATATATTTT
* * * ** * *
274573 AACTAGAAATAG-AAAAAAATTTAACTTAAAATCAATTATGACATTCCAAAATCATTTAAAGCTA
66 AA-TAAAAAT-GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGA
* * * * *
274637 GTAATAATGTTTTCGAAGGCAT-GAGTGAATATAAATAGACTC
129 GTAATAAGGCTTTCGAAGGCATAG-GTGACTATAAATGGACTT
* * * * ** * *
274679 TTCTTCCCAATGGATGACTTTTACTTCACATTTCC-AGAGGGAGACATTCAATTATAATCTATTT
1 TTCTTGCTAATGGATGGCTTTTGCTTCATGTTTCCTA-AGGCAGACATTCAATTATAATATATTT
* ** * * *
274743 TAACCAAAAATAAAAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGTG
65 TAA-TAAAAAT-GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCG
* *
274808 AGTAATAAGGCTTTCGAAGGTATAAGTGACTATAAATGGACTT
128 AGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTT
* * * * ** * * * * ***********
274851 TTCGTACCATTAAATGTCTTTTTCTTCATGTTTCCTAAGGTAAACATTCANNNNNNNNNNGTTTT
1 TTCTTGCTAATGGATGGCTTTTGCTTCATGTTTCCTAAGGCAGACATTCAATTATAATATATTTT
* *** * *
274916 AACTAAAAATGTAAAAAAATTCAACTTTAAATTGGTTATGACATTATAAAATCATTTAAAGCGAG
66 AA-TAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAG
* * * * * *
274981 TAATAAGACTTTTGAAGGC-TTGACTGACTATAAATAGATTT
130 TAATAAGGCTTTCGAAGGCATAG-GTGACTATAAATGGACTT
* * * *
275022 TTCTTGCTAATGGATAGCTTTTGCTTCATGTTTTCCTAA-GAAAACATTCAATTATAGTATATTT
1 TTCTTGCTAATGGATGGCTTTTGCTTCATG-TTTCCTAAGGCAGACATTCAATTATAATATATTT
* * * * * *
275086 TAATGAAAAATGTAAGAGAATTCAACTTAAAATAAATTATAAGATTATAAAACCATTTAAAACAA
65 TAAT-AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGA
* * ** * * *
275151 GTATTAAAGCTTTTAAAGGCATGGGTGACTAT-CATCAGACTT
129 GTAATAAGGCTTTCGAAGGCATAGGTGACTATAAAT-GGACTT
* * * * * * * *
275193 TTTTTGGC-AATGAATGG-GTTTGTCTTCATGTTTCCCAAAGTAGACATTCAA-AACTAATCTAT
1 TTCTT-GCTAATGGATGGCTTTTG-CTTCATGTTTCCTAAGGCAGACATTCAATTA-TAATATAT
* * * *
275255 TTT-ATCCAAGAATATAAAAAAATTCAACTTAAAATCAATTATGTGATTATAAAACCATATAAAG
63 TTTAAT--AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAG
* *
275319 CGAGTAATAATGCTTTCGAAGGC-TTGTGTGACTATAAATGGACTT
126 CGAGTAATAAGGCTTTCGAAGGCATAG-GTGACTATAAATGGACTT
* * ** *
275364 TTCTTG-TCAATGAAGGGCTTTCACTTC-TCGTTT-CTCAAGGTAGACATTCAATTCAATTATAA
1 TTCTTGCT-AATGGATGGCTTTTGCTTCAT-GTTTCCT-AAGGCAG--A--C-ATTCAATTATAA
* * ****
275426 TATATTTTAACTAAAAGTG-AAAAAGAATTCAA-TCTAAAATCAATTACGAGATTATAAAANNNN
58 TATATTTTAA-TAAAAATGTAAAAA-AATTCAACT-TAAAATCAATTATGAGATTATAAAACCAT
******* * * * **
275489 NNNNNNTGAGTAATAAGGCTTTCAAAGGCATGGGTGACTGTAAATAAACTT
120 TTAAAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTT
* * * * *
275540 TTCTTG-TAAATGAATGGCTTTTCCTTCATGTTTCCAAAGGCAAACATTCAATTATAATCTATTT
1 TTCTTGCT-AATGGATGGCTTTTGCTTCATGTTTCCTAAGGCAGACATTCAATTATAATATATTT
* * **********
275604 TAACAAAAAATGTAGAAACAAATT-AGCTTAAAATCAATTATGAGATTATNNNNNNNNNNAAAGC
65 TAA-TAAAAATGTA-AAA-AAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGC
* * * * *
275668 GAGTAATAAGGATTTCGAAGGCTTATGTAACTATAAATGGACGT
127 GAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTT
* * * * **********
275712 TTCTTACGAGT-GATGGCTTTTGCTTCATGTTTTCNNNNNNNNNNATTCAATTATAATATATTTT
1 TTCTTGCTAATGGATGGCTTTTGCTTCATGTTTCCTAAGGCAGACATTCAATTATAATATATTTT
** * * ** * * * *
275776 AATCGTAAATATAAAAAAATTCAATTTAAAATCAACAATGAGATTATAAAATCAGTTAACGCAAG
66 AAT-AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAG
* * * * *
275841 TAATACGACTTTTGAAGGCATAGGTAACTGTAAATGGACTT
130 TAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTT
* * * * *
275882 TTTTTGCTAATGGATGGCTTTTGCTTCATGTTTCTTGAGGCAGACAATCAATTATAATATGTTTT
1 TTCTTGCTAATGGATGGCTTTTGCTTCATGTTTCCTAAGGCAGACATTCAATTATAATATATTTT
* * * * * * *
275947 AACCAAAAATGTAAATAAATTCAACTTAAAATTAATTATAAGCTTATAAAACTATTTAAAGTGAG
66 AA-TAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAG
* * * * * *
276012 TAATAAAGCTTTCAAAGGC-TTGAGTGGCAATAGATGGACTT
130 TAATAAGGCTTTCGAAGGCATAG-GTGACTATAAATGGACTT
* * ** * * * * * * * *
276053 TCCTTACCGATGGATGACTGTTGCTTCACGTTTCCCAAAGCATACATTTAATTGTAATATATTTT
1 TTCTTGCTAATGGATGGCTTTTGCTTCATGTTTCCTAAGGCAGACATTCAATTATAATATATTTT
* * * * *
276118 AACAAAAAACGTAAAAAAACTCAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCAAG
66 AA-TAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAG
* * * * *
276183 TGATAAAGCTTTCGAAAGCATGGGTGACTATAAATGAACTT
130 TAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTT
* * * * * *
276224 TTCTTG-TAAATGAATGGCATTTT-CTTTATATTTCTTGAGACAGACATTCAATTATAATATATT
1 TTCTTGCT-AATGGATGGC-TTTTGCTTCATGTTTCCTAAGGCAGACATTCAATTATAATATATT
* * * * * *
276287 TAAACTTAAAATATAAAAAAA-TCAACTTAAAATCAATTATGACATTCTAAAACCATTTAAAGCT
64 TTAA-TAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCG
* * * *
276351 AATAATAATGCTTTCGAAGGTAT-GAGTG-CATATAAATAGACTT
128 AGTAATAAGGCTTTCGAAGGCATAG-GTGAC-TATAAATGGACTT
* * ** * * * * *
276394 TTCTCT-CCAATAGATAACTTTTACTTTATGTTT-CTCAAGGCAGATATTCAATTGTAACATATT
1 TTCT-TGCTAATGGATGGCTTTTGCTTCATGTTTCCT-AAGGCAGACATTCAATTATAATATA-T
** * * * *
276457 TTTACCAACAATATAAAAAAATTCAACTTAAAATCAATTATGACATTATAAAACCATTTAAAGTG
63 TTTAATAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCG
* * *
276522 AGTAGTAAGACTTTCGAGGGCATAGGTGACTATAAATGGA-TT
128 AGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTT
* * * * * * * * * * *
276564 TCTCTTCCCACTGAATGACTTTTACTTCATGTCTCCCAAGGCAGACCTTCAATTATAATTTTTTT
1 T-TCTTGCTAATGGATGGCTTTTGCTTCATGTTTCCTAAGGCAGACATTCAATTATAATATATTT
* * *
276629 TAATAAAAAATGTAAAACAATTCAACTTAAAATCAATTATGATATTATAAAACCATTTAAAGCAA
65 TAAT-AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGA
* * * *
276694 GTGATAAGGCTTTCGAAAGTAT-GTGGGACTATAAATGGACTT
129 GTAATAAGGCTTTCGAAGGCATAG-GTGACTATAAATGGACTT
* * * * * * * * * * * *
276736 TTCTCGCGAATGAATGGCTTTTTCTTTATATGTCTTGACGCAGACATTCAATTATAATAAATTCT
1 TTCTTGCTAATGGATGGCTTTTGCTTCATGTTTCCTAAGGCAGACATTCAATTATAATATATTTT
* * * * * * * *
276801 AACCAGAAATAT-AAAAAATTCAACTTAAATTCAATTATGACATTTTAAAACTATTTAAAGCTAG
66 AA-TAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAG
* * * *
276865 TAATAATGCTTTCGAAGGCAT-GAGTTAATATAAATAGACTT
130 TAATAAGGCTTTCGAAGGCATAG-GTGACTATAAATGGACTT
* * * * * * * * *
276906 TTCTT--TACGATGGATGGCTTTTACTTCACGTTTCTTGAGGTAGACTTTCAACTGTAATCTATT
1 TTCTTGCTA--ATGGATGGCTTTTGCTTCATGTTTCCTAAGGCAGACATTCAATTATAATATATT
* * * * * * *
276969 TTAACCAACAA--T-ATAAAATTTAACCTAAAATCAATTATGAGATTATAAAGCCATTTTAAGCG
64 TTAA-TAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCG
* * * * * *
277031 AATAATTAGGCTTTCGAAGGCATAAGTAACAATAAATGGACCT
128 AGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTT
* * * * * * * * * *
277074 TTCTTACCACTGAATGGCTTTTACTTCATATTTCCTAAGGTAGATATTCAATTATAATTTGTTTT
1 TTCTTGCTAATGGATGGCTTTTGCTTCATGTTTCCTAAGGCAGACATTCAATTATAATATATTTT
* * *
277139 AATAAAAAATATAAAAAAATTCAACTTTAAATCAATTATGATATTATAAAACCATTTAAAGCGAG
66 AAT-AAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAG
* * * *
277204 TAATAAGTCTTTTGAAGGCACAGGTGACCATAAATGGACTT
130 TAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTT
277245 TTCTTGCTAATGGA
1 TTCTTGCTAATGGA
277259 CGGGTTTTAC
Statistics
Matches: 3305, Mismatches: 859, Indels: 247
0.75 0.19 0.06
Matches are distributed among these distances:
167 2 0.00
168 166 0.05
169 132 0.04
170 622 0.19
171 1779 0.54
172 444 0.13
173 27 0.01
174 2 0.00
175 7 0.00
176 117 0.04
177 6 0.00
178 1 0.00
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (170 bp):
TTCTTGCTAATGGATGGCTTTTGCTTCATGTTTCCTAAGGCAGACATTCAATTATAATATATTTT
AATAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
AATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTT
Found at i:277605 original size:171 final size:171
Alignment explanation
Indices: 277298--279314 Score: 1543
Period size: 171 Copynumber: 11.8 Consensus size: 171
277288 ACATTGAAAT
** * * * * * *
277298 ATTATGAGATTATAAAATGATTCAAAGTAAGTGACAAGGCTTTCAATGGCATG-GTGACTATAAA
1 ATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAA
* * * * * * * * *
277362 TGGTCTTTTATTGCCAATGAATGGCTTTTTCTTCACGTTTGT-TAAGGCAAGCATTCAAATATTA
66 TGGACTTTTCTTGCCAATGGATGGCTTTTTCTTCACGTTTCTCGAA-GTAAACATTCAATTATAA
* * * * *
277426 TCTATTTTAATAAAAAATATACAAAAATTCAACTCAAAGTTA
130 TATATTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCA
*
277468 ATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGACTTTCAAAGGCTTGAGTGACTATAAA
1 ATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAA
* * * * * *
277533 TGGACTTTT-TATGCTAATGGATGACTTTTTCTTCACGTTTCCCAAAGTAAACTTTTAATTATAA
66 TGGACTTTTCT-TGCCAATGGATGGCTTTTTCTTCACGTTTCTCGAAGTAAACATTCAATTATAA
* *
277597 TATATTTTAACAAAAAATATAAAAAAATTTAACTTAAAATCA
130 TATATTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCA
** * *
277639 ATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGCAT-AGGTGACTATGA
1 ATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCTTGA-GTGACTATAA
* * * * * * * * * *
277703 ATGAACTTTTCTTACTAATGAATGGGTTTCTCTTCATGTTTC-CTAA-TACAAATATTCAAATAT
65 ATGGACTTTTCTTGCCAATGGATGGCTTTTTCTTCACGTTTCTCGAAGT--AAACATTCAATTAT
* * * *
277766 AATCTGTTTTAACT-AAAAATGTAAAAAAAATTCAACGTAAAATCA
128 AATATATTTTAA-TAAAAAATAT-AAAAAAATTCAACTTAAAATCA
* ** * * * * *
277811 AATATGAGATTATAAAATTATTTAAAGCGAGTAATAAGTCTTTCGAAA-G-TATGGGTGACCACA
1 ATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTC-AAAGGCT-TGAGTGACTATA
* * * * * * *
277874 AATAGACTTTTCTTGCCAATTGA-GGGTTTTTACTTTACGTTTCTTGAGGTAGACATTCAA--AT
64 AATGGACTTTTCTTGCCAATGGATGGCTTTTT-CTTCACGTTTCTCGAAGTAAACATTCAATTAT
* * ** * ** *
277936 ATTATCTGTTTAACCAAAAATACAAAAACCTCCAACTTAAAATCA
128 AATATAT-TTTAATAAAAAATATAAAAAAATTCAACTTAAAATCA
* * * * *
277981 ATTATGAGATTATAAAACCATTTGAAGTAAGTAGTAAGACTTTCAAAGG-TAT-AGGTGATTATA
1 ATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCT-TGA-GTGACTATA
* * * * * * * * *
278044 AATAGACTTTTCTTACCAATGGA-GGATTTTTACTTCACGTTTGTTGAGGCAGACATTCAAATAT
64 AATGGACTTTTCTTGCCAATGGATGGCTTTTT-CTTCACGTTTCTCGAAGTAAACATTCAATTAT
* * ** * * *
278108 TATCTGCTTTAATCAAAAATATAAAAAAATCCAATTTAAGAA-CA
128 AATATATTTTAATAAAAAATATAAAAAAATTCAACTTAA-AATCA
**
278152 ATTATGAGATTATAAAACCATTGCAAGCAAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAA
1 ATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAA
* * * * * * *
278217 TTGG-CTTTTCTTACTAATGGATAGCTTTTGCTTCACATTTCTTGAAGTAGACATTCAATTATAA
66 -TGGACTTTTCTTGCCAATGGATGGCTTTTTCTTCACGTTTCTCGAAGTAAACATTCAATTATAA
*
278281 TATATTTTAATGAAAAAAGTA-AAAAGAACTT-AACTTAAAATCA
130 TATATTTTAAT-AAAAAA-TATAAAA-AAATTCAACTTAAAATCA
* * * * * * * * *
278324 ATAATGTGAGTATAAAACTATTTAAAGCAGGTAATAAAGCTTTTATAGGCCTT-AGTGACTGTAA
1 ATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGG-CTTGAGTGACTATAA
* * * * * *
278388 ATGGACTTTTCTTACCAATGGATGGCTTTTGCTTCACATTTTTC-AATGTAGATATTCAATTATA
65 ATGGACTTTTCTTGCCAATGGATGGCTTTTTCTTCACGTTTCTCGAA-GTAAACATTCAATTATA
* * *
278452 ATATATTTTAACT-ACAAATGTGAAAAGAAAATCAACTTAAAATCA
129 ATATATTTTAA-TAAAAAATAT-AAAA-AAATTCAACTTAAAATCA
* * * * ** * *
278497 ATAATCAGATTATAAAACTATTTAAAGTAAGTAATAAGATTTTCGAAGGCAT-AGGTGACTATAA
1 ATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCTTGA-GTGACTATAA
* * * * * * * * *
278561 ATGGACTTTTCTTGGCAATGAATGGCTTTGTCTTTATGTTTCCCGAGGCAAACATTCAAATATAA
65 ATGGACTTTTCTTGCCAATGGATGGCTTTTTCTTCACGTTTCTCGAAGTAAACATTCAATTATAA
* * *
278626 TCTGTTTTAACTAAAAAA-GTAAAAAAATTCAACTTAAAATCA
130 TATATTTTAA-TAAAAAATATAAAAAAATTCAACTTAAAATCA
* * ** ** *
278668 ATTATGAGATTATAAAACCATTTAAAGCGAGTATTAAGGCTTTTGAAGGCTTTTGTGGCTATAAA
1 ATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAA
* * * * *
278733 TGGACTTTTCTTGTCAATGGA-GGGTTTTTACTTCACCTTT-TCCAAGTAGATATTCAATTTAAT
66 TGGACTTTTCTTGCCAATGGATGGCTTTTT-CTTCACGTTTCTCGAAGTA-A-A--C-ATTCAAT
* **
278796 TATAATAAATTTTAACT-AAAAATATAAAAAAATTCAACTTAAAATTG
125 TATAATATATTTTAA-TAAAAAATATAAAAAAATTCAACTTAAAATCA
* ** * *
278843 ATTATGAGATTTTAAAACCATTTAAAGCGGGCT-ATAAGGCTCTT-AAAAGCATGAGTGACTATA
1 ATTATGAGATTATAAAACCATTTAAAGCAAG-TAATAAGGCT-TTCAAAGGCTTGAGTGACTATA
* ** * * * *
278906 AATGGACTTTCCTTATCAATGAATGGCTTTTTCTTCAAGTTTCTC-AAGGCAAACATTC-TTATA
64 AATGGACTTTTCTTGCCAATGGATGGCTTTTTCTTCACGTTTCTCGAA-GTAAACATTCAAT-TA
* ** * * *
278969 TAATCTATTTTAACCAAAAATACAAAAATATTAAACTTAAAATCA
127 TAATATATTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCA
* * ** * **
279014 ATTACGAGATTATAAGACCATTTAAAGTGAGTAACAAGGCTTTTGAAGGCTTGAGTGACTATAAA
1 ATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAA
* * * * * * * * * * *
279079 TAGACTTTTTTTGCCAATGAATGGCCTTTACTTTACATTTATTGAAGCAGACATTCAATTATAAT
66 TGGACTTTTCTTGCCAATGGATGGCTTTTTCTTCACGTTTCTCGAAGTAAACATTCAATTATAAT
* *
279144 ATATTTTAATCAAAAAA-GTAAAAAAA-TCTAACTTAAATTCA
131 ATATTTTAAT-AAAAAATATAAAAAAATTC-AACTTAAAATCA
* * *
279185 ATTATGAGACTATAAAACTC-TTTAAAGCAAGTAATTAGGCTTTCGAAGG-TATGAGTGACTATA
1 ATTATGAGATTATAAAAC-CATTTAAAGCAAGTAATAAGGCTTTCAAAGGCT-TGAGTGACTATA
* * * * * * * *
279248 AATTGACTTTTCTTACCAATGAATGAG-TTTGTCTTCACATTTCTC-AAGGTAGACATTGAAATA
64 AATGGACTTTTCTTGCCAATGGATG-GCTTTTTCTTCACGTTTCTCGAA-GTAAACATTCAATTA
279311 TAAT
127 TAAT
279315 CTTTTCTAGC
Statistics
Matches: 1482, Mismatches: 300, Indels: 129
0.78 0.16 0.07
Matches are distributed among these distances:
169 4 0.00
170 192 0.13
171 734 0.50
172 274 0.18
173 131 0.09
174 13 0.01
175 120 0.08
176 14 0.01
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.35
Consensus pattern (171 bp):
ATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAA
TGGACTTTTCTTGCCAATGGATGGCTTTTTCTTCACGTTTCTCGAAGTAAACATTCAATTATAAT
ATATTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCA
Found at i:279683 original size:35 final size:35
Alignment explanation
Indices: 279644--279718 Score: 114
Period size: 35 Copynumber: 2.1 Consensus size: 35
279634 TTACAATAGC
* ** *
279644 TTTTCACAGGCTCAGCCACAACCTTCAACAATGGT
1 TTTTCAAAGGCTCAAACACAACCTTCAAAAATGGT
279679 TTTTCAAAGGCTCAAACACAACCTTCAAAAATGGT
1 TTTTCAAAGGCTCAAACACAACCTTCAAAAATGGT
279714 TTTTC
1 TTTTC
279719 CTCGGATAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.29
Consensus pattern (35 bp):
TTTTCAAAGGCTCAAACACAACCTTCAAAAATGGT
Found at i:281097 original size:26 final size:26
Alignment explanation
Indices: 281054--281103 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
281044 AGTTTTCCTA
281054 GAATGCCCCTAACATTTCTAAGAATT
1 GAATGCCCCTAACATTTCTAAGAATT
*
281080 GAATGCCCTTAA-AGTTTCTAAGAA
1 GAATGCCCCTAACA-TTTCTAAGAA
281104 CTTCTACCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.30
Consensus pattern (26 bp):
GAATGCCCCTAACATTTCTAAGAATT
Found at i:286762 original size:26 final size:26
Alignment explanation
Indices: 286719--286770 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
286709 AGTTTTCCTA
*
286719 GAATGCCCTTAACATTTCTAAGAACT
1 GAATGCCCCTAACATTTCTAAGAACT
286745 GAATGCCCCTAA-AGTTTCTAAGAACT
1 GAATGCCCCTAACA-TTTCTAAGAACT
286771 TTTACCCTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (26 bp):
GAATGCCCCTAACATTTCTAAGAACT
Found at i:289948 original size:35 final size:35
Alignment explanation
Indices: 289898--289968 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
289888 NNNNNNNNNN
* *
289898 CTTCAACAATAGTTTTTCAAAGGCTCAACCACAAC
1 CTTCAACAATAGTTTTTCAAAGGATCAACCAAAAC
* **
289933 CTTCAACAATGGTTTTTCCCAGGATCAACCAAAAC
1 CTTCAACAATAGTTTTTCAAAGGATCAACCAAAAC
289968 C
1 C
289969 CAAAAACTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.35, C:0.30, G:0.10, T:0.25
Consensus pattern (35 bp):
CTTCAACAATAGTTTTTCAAAGGATCAACCAAAAC
Found at i:290585 original size:21 final size:21
Alignment explanation
Indices: 290555--290611 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
290545 TGGCAATAAG
*
290555 CTCTTAGTCGACTAACTCTAT
1 CTCTTGGTCGACTAACTCTAT
* *
290576 CTCTTGGTCGACCAACTCTGT
1 CTCTTGGTCGACTAACTCTAT
*
290597 CTCTTGGTCAACTAA
1 CTCTTGGTCGACTAA
290612 GTGCTCCTTG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.21, C:0.30, G:0.14, T:0.35
Consensus pattern (21 bp):
CTCTTGGTCGACTAACTCTAT
Found at i:294842 original size:35 final size:35
Alignment explanation
Indices: 294798--294875 Score: 86
Period size: 35 Copynumber: 2.2 Consensus size: 35
294788 TTAGTTTTTG
* * *
294798 GGTTTTGGTTGATCCCGGGAAAAGA-CATTGTTGAA
1 GGTTGTGGTTGAGCCCGGGAAAA-ACCATTATTGAA
***
294833 GGTTGTGGTTGAGCCTTTGAAAAACCATTATTGAA
1 GGTTGTGGTTGAGCCCGGGAAAAACCATTATTGAA
294868 GGTTGTGG
1 GGTTGTGG
294876 CNNNNNNNNN
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
34 1 0.03
35 35 0.97
ACGTcount: A:0.24, C:0.10, G:0.32, T:0.33
Consensus pattern (35 bp):
GGTTGTGGTTGAGCCCGGGAAAAACCATTATTGAA
Found at i:304448 original size:21 final size:21
Alignment explanation
Indices: 304411--304450 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
304401 AAATAGTATA
*
304411 CACTTAGTTGATCAAGAGCTT
1 CACTTAGTTAATCAAGAGCTT
304432 CACTTAGTTAA-CTAAGAGC
1 CACTTAGTTAATC-AAGAGC
304451 ATTCTGTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (21 bp):
CACTTAGTTAATCAAGAGCTT
Found at i:311736 original size:35 final size:35
Alignment explanation
Indices: 311674--311745 Score: 92
Period size: 35 Copynumber: 2.1 Consensus size: 35
311664 NNNNNNNNNN
* *
311674 GTTGAAGGTTATGGTTGAGCCTTTGAAAAACCATT
1 GTTGAAGGTTATGGCTGAGCATTTGAAAAACCATT
* *
311709 GTTGAAGGTTGTGGCTGAG-ATTGTGAAAAGCCATT
1 GTTGAAGGTTATGGCTGAGCATT-TGAAAAACCATT
311744 GT
1 GT
311746 AAAAGCTTGG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 2 0.06
35 30 0.94
ACGTcount: A:0.26, C:0.10, G:0.31, T:0.33
Consensus pattern (35 bp):
GTTGAAGGTTATGGCTGAGCATTTGAAAAACCATT
Found at i:316287 original size:21 final size:21
Alignment explanation
Indices: 316261--316317 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
316251 ACCTTTCCAC
316261 TTAGTCGACGAAGAGACAGAG
1 TTAGTCGACGAAGAGACAGAG
316282 TTAGTCGACGAAGAGACAGAG
1 TTAGTCGACGAAGAGACAGAG
*
316303 TTAGTCGACTAAGAG
1 TTAGTCGACGAAGAG
316318 CTTACTGCCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.14, G:0.32, T:0.18
Consensus pattern (21 bp):
TTAGTCGACGAAGAGACAGAG
Found at i:316914 original size:35 final size:35
Alignment explanation
Indices: 316870--316954 Score: 107
Period size: 35 Copynumber: 2.4 Consensus size: 35
316860 TTAGTTTTTG
* * * *
316870 GGTTTTGGTTGATCCCGGGAAAAACTATTGTTGAA
1 GGTTGTGGTTGAGCCCGCGAAAAACCATTGTTGAA
**
316905 GGTTGTGGTTGAGCCTTCGAAAAACCATTGTTGAA
1 GGTTGTGGTTGAGCCCGCGAAAAACCATTGTTGAA
*
316940 GGTTGTGGCTGAGCC
1 GGTTGTGGTTGAGCC
316955 TATGAAAAGC
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 43 1.00
ACGTcount: A:0.22, C:0.14, G:0.32, T:0.32
Consensus pattern (35 bp):
GGTTGTGGTTGAGCCCGCGAAAAACCATTGTTGAA
Found at i:316955 original size:35 final size:35
Alignment explanation
Indices: 316888--316970 Score: 123
Period size: 35 Copynumber: 2.4 Consensus size: 35
316878 TTGATCCCGG
* *
316888 GAAAAACTATTGTTGAAGGTTGTGGTTGAGCCT-T
1 GAAAAACCATTGTTGAAGGTTGTGGCTGAGCCTAT
316922 CGAAAAACCATTGTTGAAGGTTGTGGCTGAGCCTAT
1 -GAAAAACCATTGTTGAAGGTTGTGGCTGAGCCTAT
*
316958 GAAAAGCCATTGT
1 GAAAAACCATTGT
316971 AAAAGTNNNN
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
35 43 0.98
36 1 0.02
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.30
Consensus pattern (35 bp):
GAAAAACCATTGTTGAAGGTTGTGGCTGAGCCTAT
Found at i:324161 original size:35 final size:35
Alignment explanation
Indices: 324088--324162 Score: 132
Period size: 35 Copynumber: 2.1 Consensus size: 35
324078 TTGATTCCGG
* *
324088 GAAAAACCATTGTTGAAGGTTGTGGTTGAGCCTTT
1 GAAAAACCATTGTTGAAGGTTGTGGCTGAGCCTAT
324123 GAAAAACCATTGTTGAAGGTTGTGGCTGAGCCTAT
1 GAAAAACCATTGTTGAAGGTTGTGGCTGAGCCTAT
324158 GAAAA
1 GAAAA
324163 GCCAATGTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.29
Consensus pattern (35 bp):
GAAAAACCATTGTTGAAGGTTGTGGCTGAGCCTAT
Found at i:328392 original size:170 final size:168
Alignment explanation
Indices: 327851--328412 Score: 572
Period size: 171 Copynumber: 3.3 Consensus size: 168
327841 AAAACGAATA
* * *
327851 CCATCAATTGACAAGAATAGTCCATTTATAGTCACTCATACCTTCGAAAGCCTTATTACTCCCTT
1 CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCGAAAG-CTTATTACTCACTT
* * * * *
327916 TAAATGGTTTTATAATCTAATAAATCATTTGAAATTAAAATGTTT-TTCATTTTTAGTTAAAATC
65 TAAATAGTTTTATAATCTTATAAATGATTTCAAATCAAAAT-TTTCTTCATTTTTAGTTAAAAT-
* *
327980 AATCATAATTGGATGTTTGCATTGGGAAC-TATGAAGTGGATG
128 AATCATAATTGGATGTTTGCATTTGAAACGT-T-AAGTGGATG
* * * * *
328022 CCATCCATTGACAAGAAAAGTCTATTTATAGTCATTCATGCCATCGAAAGCCTATTGACTCACTT
1 CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCGAAAGCTTATT-ACTCACTT
* ** ** * *
328087 GAAATTTTTTTATGTTCTTATAAATGATTTCAAATCAAAATCTTCTTCATTTTTAGTGAAAATAA
65 TAAATAGTTTTATAATCTTATAAATGATTTCAAATCAAAATTTTCTTCATTTTTAGTTAAAAT-A
* * * *
328152 ATCATATTTGGATGTTTGCATTATGTAATGTGAAGTGGATG
129 ATCATAATTGGATGTTTGCATT-TGAAACGTTAAGTGGATG
** * * * *
328193 CCATCTGTTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCTTTATTATTCGCTT
1 CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCGAAAGC-TTATTACTCACTT
* * * * ** *
328258 TACATAGTTTTGTAAT-TTATAAATGATTTTAGATCAAAATTTTCTTTGTTTTTAATTAAAATAG
65 TAAATAGTTTTATAATCTTATAAATGATTTCAAATCAAAATTTTCTTCATTTTTAGTTAAAATA-
* * *** *
328322 ATCATAATTGCATGATTGCATTTGAAAACGTTAAGCAAAAG
129 ATCATAATTGGATGTTTGCATTTG-AAACGTTAAGTGGATG
* * *
328363 CCATCCATTGACAAGGAAAGTCCATTTATATTCACTCGTACCTTCGAAAG
1 CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCGAAAG
328413 TCTTGTTGTT
Statistics
Matches: 321, Mismatches: 63, Indels: 15
0.80 0.16 0.04
Matches are distributed among these distances:
169 3 0.01
170 117 0.36
171 193 0.60
172 7 0.02
173 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (168 bp):
CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCGAAAGCTTATTACTCACTTT
AAATAGTTTTATAATCTTATAAATGATTTCAAATCAAAATTTTCTTCATTTTTAGTTAAAATAAT
CATAATTGGATGTTTGCATTTGAAACGTTAAGTGGATG
Found at i:383346 original size:18 final size:18
Alignment explanation
Indices: 383323--383361 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
383313 CTTTTTTTTT
383323 TTTTGA-AATAAAAATATA
1 TTTTGATAA-AAAAATATA
383341 TTTTGATAAAAAAATATA
1 TTTTGATAAAAAAATATA
383359 TTT
1 TTT
383362 ATAATAATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (18 bp):
TTTTGATAAAAAAATATA
Found at i:391472 original size:20 final size:20
Alignment explanation
Indices: 391430--391472 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
391420 NNATTATTAT
* **
391430 AAATATATTTTTTTTTATCA
1 AAATATATTTTTATTTAAAA
391450 AAATATATTTTTATTTAAAA
1 AAATATATTTTTATTTAAAA
391470 AAA
1 AAA
391473 AAGGAAAGGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (20 bp):
AAATATATTTTTATTTAAAA
Found at i:398135 original size:19 final size:19
Alignment explanation
Indices: 398109--398146 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
398099 TTTTTAAAAT
398109 AAAAATATATTT-TGATAA
1 AAAAATATATTTATGATAA
398127 AAAATATATATTTATGATAA
1 AAAA-ATATATTTATGATAA
398147 TAGAATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 8 0.44
20 6 0.33
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.39
Consensus pattern (19 bp):
AAAAATATATTTATGATAA
Found at i:405691 original size:7 final size:7
Alignment explanation
Indices: 405679--405740 Score: 72
Period size: 7 Copynumber: 8.6 Consensus size: 7
405669 NNNNNNAGAA
405679 AGAAAGG
1 AGAAAGG
405686 AGAAAGG
1 AGAAAGG
405693 AAGAAAGG
1 -AGAAAGG
405701 AAGAAAGGG
1 -AGAAA-GG
*
405710 AGAGAGG
1 AGAAAGG
*
405717 AGAAAGA
1 AGAAAGG
405724 AGAAAGG
1 AGAAAGG
405731 AGAAA-G
1 AGAAAGG
405737 AGAA
1 AGAA
405741 GGTTTGGCTT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
6 5 0.10
7 25 0.51
8 17 0.35
9 2 0.04
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (7 bp):
AGAAAGG
Found at i:405699 original size:8 final size:8
Alignment explanation
Indices: 405678--405741 Score: 73
Period size: 8 Copynumber: 8.4 Consensus size: 8
405668 NNNNNNNAGA
405678 AAGAAAGG
1 AAGAAAGG
405686 -AGAAAGG
1 AAGAAAGG
405693 AAGAAAGG
1 AAGAAAGG
405701 AAGAAAGG
1 AAGAAAGG
* *
405709 GAGAGAGG
1 AAGAAAGG
405717 -AGAAA-G
1 AAGAAAGG
405723 AAGAAAGG
1 AAGAAAGG
405731 -AGAAAGAG
1 AAGAAAG-G
405739 AAG
1 AAG
405742 GTTTGGCTTA
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
6 1 0.02
7 22 0.46
8 23 0.48
9 2 0.04
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (8 bp):
AAGAAAGG
Found at i:407353 original size:28 final size:27
Alignment explanation
Indices: 407302--407377 Score: 116
Period size: 28 Copynumber: 2.7 Consensus size: 27
407292 NNNNNNNNTT
*
407302 TAAATTAAAACAAACATATCTTCTTGTC
1 TAAATTAAAACAAACATGT-TTCTTGTC
*
407330 TAAATTAAGATCAAACATGTTTCTTGTC
1 TAAATTAA-AACAAACATGTTTCTTGTC
407358 TAAATTAAAACAAACATGTT
1 TAAATTAAAACAAACATGTT
407378 AAAACTATCA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 11 0.25
28 24 0.55
29 9 0.20
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (27 bp):
TAAATTAAAACAAACATGTTTCTTGTC
Found at i:410858 original size:23 final size:22
Alignment explanation
Indices: 410832--410895 Score: 85
Period size: 23 Copynumber: 2.8 Consensus size: 22
410822 ACTAGGAAGC
410832 AAAGGAAGAAAGAAAGAAAGGAG
1 AAAGGAAGAAAG-AAGAAAGGAG
410855 AAAGGAAGAAAGGAAGAAAAGGAG
1 AAAGGAAGAAA-GAAG-AAAGGAG
*
410879 AGAGG-AGAAAGAAGAAA
1 AAAGGAAGAAAGAAGAAA
410896 AAAGAAAGAG
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
21 3 0.08
22 4 0.11
23 19 0.50
24 12 0.32
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (22 bp):
AAAGGAAGAAAGAAGAAAGGAG
Found at i:410868 original size:31 final size:32
Alignment explanation
Indices: 410825--410908 Score: 104
Period size: 31 Copynumber: 2.7 Consensus size: 32
410815 NNNNNCAACT
410825 AGGAAGCAAAGGAAGAAAGA-AAGAAAGGAGAA
1 AGGAAG-AAAGGAAGAAAGAGAAGAAAGGAGAA
* *
410857 AGGAAGAAAGGAAGAAA-AGGAGAGAGGAGAA
1 AGGAAGAAAGGAAGAAAGAGAAGAAAGGAGAA
*
410888 A-GAAGAAA-AAAGAAAGAGAAG
1 AGGAAGAAAGGAAGAAAGAGAAG
410909 GTTCAGCTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
29 6 0.13
30 12 0.26
31 22 0.48
32 6 0.13
ACGTcount: A:0.63, C:0.01, G:0.36, T:0.00
Consensus pattern (32 bp):
AGGAAGAAAGGAAGAAAGAGAAGAAAGGAGAA
Found at i:410884 original size:16 final size:16
Alignment explanation
Indices: 410825--410888 Score: 62
Period size: 15 Copynumber: 4.0 Consensus size: 16
410815 NNNNNCAACT
410825 AGGAAGCAAAGGA-AGAA
1 AGGAAG-AAAGGAGA-AA
*
410842 AGAAAGAAAGGAG-AA
1 AGGAAGAAAGGAGAAA
410857 AGGAAGAAAGGAAGAAA
1 AGGAAGAAAGG-AGAAA
*
410874 AGG-AGAGAGGAGAAA
1 AGGAAGAAAGGAGAAA
410889 GAAGAAAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
15 17 0.41
16 14 0.34
17 10 0.24
ACGTcount: A:0.61, C:0.02, G:0.38, T:0.00
Consensus pattern (16 bp):
AGGAAGAAAGGAGAAA
Found at i:410905 original size:23 final size:23
Alignment explanation
Indices: 410832--410908 Score: 70
Period size: 23 Copynumber: 3.4 Consensus size: 23
410822 ACTAGGAAGC
**
410832 AAAG-GAAGAAAGAAAGAAAGGAG
1 AAAGAGAAGAAAG-AAGAAAAAAG
*
410855 AAAG-GAAGAAAGGAAG-AAAAGG
1 AAAGAGAAGAAA-GAAGAAAAAAG
* *
410877 AGAGAGGAGAAAGAAGAAAAAAG
1 AAAGAGAAGAAAGAAGAAAAAAG
410900 AAAGAGAAG
1 AAAGAGAAG
410909 GTTCAGCTTA
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
22 10 0.23
23 32 0.74
24 1 0.02
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (23 bp):
AAAGAGAAGAAAGAAGAAAAAAG
Found at i:418434 original size:24 final size:25
Alignment explanation
Indices: 418393--418439 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
418383 TTTAATGTAA
*
418393 ATAAAAATAGAATTAAAATAACTTT
1 ATAAAAATAGAATGAAAATAACTTT
*
418418 ATAAAAATA-ACTGAAAATAACT
1 ATAAAAATAGAATGAAAATAACT
418440 AAATTATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.62, C:0.06, G:0.04, T:0.28
Consensus pattern (25 bp):
ATAAAAATAGAATGAAAATAACTTT
Found at i:418728 original size:11 final size:11
Alignment explanation
Indices: 418708--418737 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
418698 AATAACATTT
418708 TATTAATAAAA
1 TATTAATAAAA
*
418719 TATTATTAAAA
1 TATTAATAAAA
418730 TATTAATA
1 TATTAATA
418738 TTTTATTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (11 bp):
TATTAATAAAA
Found at i:434909 original size:40 final size:39
Alignment explanation
Indices: 434855--434930 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 39
434845 TTAAATGAAT
** *
434855 TTATAATTTATAAATGATTTTAAATTGAAATCTTTTTTC
1 TTATAATTTATAAATGATACTAAATCGAAATCTTTTTTC
434894 TTATAATCTTATAAATGATACTAAATCGAAATCTTTT
1 TTATAAT-TTATAAATGATACTAAATCGAAATCTTTT
434931 CAAATTTGGC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
39 7 0.21
40 26 0.79
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.49
Consensus pattern (39 bp):
TTATAATTTATAAATGATACTAAATCGAAATCTTTTTTC
Found at i:438307 original size:40 final size:39
Alignment explanation
Indices: 438253--438329 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 39
438243 TTAAATGAAT
* *
438253 TTATAATTTATAAATGATTTTAAATAGAAATTTTTTTTC
1 TTATAATTTATAAATGATTCTAAATAGAAATCTTTTTTC
*
438292 TTATAATCTTATAAATGATTCTAAATCGAAATCTTTTT
1 TTATAAT-TTATAAATGATTCTAAATAGAAATCTTTTT
438330 AAATTTTGCT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
39 7 0.21
40 27 0.79
ACGTcount: A:0.38, C:0.06, G:0.05, T:0.51
Consensus pattern (39 bp):
TTATAATTTATAAATGATTCTAAATAGAAATCTTTTTTC
Found at i:452111 original size:19 final size:20
Alignment explanation
Indices: 452081--452119 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
452071 TTAATAACTT
*
452081 TAAATAGATTTATAATCTTA
1 TAAATAGATTTAAAATCTTA
452101 TAAAT-GATTTAAAATCTTA
1 TAAATAGATTTAAAATCTTA
452120 AAGTTTCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (20 bp):
TAAATAGATTTAAAATCTTA
Found at i:461822 original size:169 final size:169
Alignment explanation
Indices: 461302--462301 Score: 592
Period size: 169 Copynumber: 5.9 Consensus size: 169
461292 CCATTGACAG
* * * * * ** * *
461302 GAAAAGTCAATTTACAGTCACTCATGTCATCAAAAACCTTATTACTTGCTTTATAT-GATTTTAC
1 GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCACTTTAAATAG-TTTTAT
* * * * *
461366 AAT-TTATAAATAATTTTAAATCAAAATCTTTTTCATTTTTGGTTTGAATA-GATTACAATTCGA
65 AATCTTATAAATAATTTTAAATCAAAATCTTTTTCA-TTTTGG-TTAAACACGATCATAATTAGA
* * * ** * *
461429 TGTTTGCTTTAT-G-AA-ATGAGAAGTGAAAGCAAACCAATAACAA
128 TGTTTGC---ATGGAAACATG-TAAGTGAAAGCCATCCTTTTATAA
* * * * * * *
461472 GAAAAGTTCAATTATAGTCACTCACGCCTTCGAAAGGC-TAGTTATTTACTTTAAATTA-TTTTA
1 GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTA-TTACTCACTTTAAA-TAGTTTTA
* * ** * ** * *
461535 TAATCTTGT-AATGATTTTAAATTGAAATCTTATTGTTTTTAGTTCAAACA-TATCATAATT-GC
64 TAATCTTATAAATAATTTTAAATCAAAATCTTTTTCATTTTGGTT-AAACACGATCATAATTAG-
** * * * * *** * *
461597 ATGCATGCACTAGG-CA-ATGTGAAGCGGATGCCATTGATTGACAA
127 ATGTTTGCA-T-GGAAACATGT-AAGTGAAAGCCATCCTTTTATAA
* * * * * * * *
461641 GAAAAGTCCATTTATGGTCATTCATGCTTTCGAAAGCTTTGTTGCTCACTTTAAATGGTTTTATA
1 GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCACTTTAAATAGTTTTATA
* ** **
461706 AT-TTATAAATGATTTTAAATCAAAATCTTTTTTGTTTTCGGTTAAACACGATCATAATTTTATG
66 ATCTTATAAATAATTTTAAATCAAAATCTTTTTCATTTT-GGTTAAACACGATCATAATTAGATG
**
461770 TTTGCACTAGGAAACATGTAA-CAAAAGCCATCCTTTTATAA
130 TTTGCA-T-GGAAACATGTAAGTGAAAGCCATCCTTTTATAA
* * *** *
461811 GAAAA-TCCATTTATAGTCACTCATGCCCTCAAAAGCCTAATTACTTGTTTTAAATGGTTTTATA
1 GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCACTTTAAATAGTTTTATA
* * * *
461875 ATCATATAAATGATTTTAAATCAAAATCTTTTT-ATTTTTGGTTCAAAC-CTATCATAATTCGAT
66 ATCTTATAAATAATTTTAAATCAAAATCTTTTTCA-TTTTGGTT-AAACACGATCATAATTAGAT
* * ***
461938 GTTTGCATTGAGAAACATG-AAGTGGATGCCAT-CTATTGCCAA
129 GTTTGCA-TG-GAAACATGTAAGTGAAAGCCATCCT-TTTATAA
* * * * *
461980 GAAAAGCCCATTTAGAGTCACTTATGCCTTCGAAAGCCTTATTACTTACTTTAAATAGTTTTATA
1 GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCACTTTAAATAGTTTTATA
* * *
462045 AT-TTATTAATAATTTTAACTCAAAAATCTTTTTCATTGTTAGTTAAA-ACAGATCATAATTAGA
66 ATCTTATAAATAATTTTAAATC-AAAATCTTTTTCATT-TTGGTTAAACAC-GATCATAATTAGA
* * * **
462108 TATCTGCATTGAGAA-ATGTGAAGTGAAAGCCATCAATTTATAA
128 TGTTTGCATGGA-AACATGT-AAGTGAAAGCCATCCTTTTATAA
* ** * * * **
462151 GAAAACTTTATTTATAGTCACTCATAG-CTTCAAAAGCTTTGTTACTCCCTTTAAATAGTTTTGG
1 GAAAAGTCCATTTATAGTCACTCAT-GCCTTCAAAAGCCTTATTACTCACTTTAAATAGTTTTAT
** * ** * *
462215 AATCTTATAAATAATTTTAAATTGAAATCTTTTTCATTTTGGGTTAAAGAATATCATATTTACAT
65 AATCTTATAAATAATTTTAAATCAAAATCTTTTTCATTTT-GGTTAAACACGATCATAATTAGAT
*
462280 TTTTGCATGGGAAACAT-TAAGT
129 GTTTGCAT-GGAAACATGTAAGT
462302 AGAAGCAATT
Statistics
Matches: 641, Mismatches: 149, Indels: 80
0.74 0.17 0.09
Matches are distributed among these distances:
166 1 0.00
167 1 0.00
168 12 0.02
169 239 0.37
170 225 0.35
171 137 0.21
172 26 0.04
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.39
Consensus pattern (169 bp):
GAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCACTTTAAATAGTTTTATA
ATCTTATAAATAATTTTAAATCAAAATCTTTTTCATTTTGGTTAAACACGATCATAATTAGATGT
TTGCATGGAAACATGTAAGTGAAAGCCATCCTTTTATAA
Found at i:461892 original size:170 final size:169
Alignment explanation
Indices: 461277--462259 Score: 556
Period size: 170 Copynumber: 5.8 Consensus size: 169
461267 TTAGGAAATG
* * * * * * * * * *
461277 TGAAGCAAATGCCATCCATTGACAGGAAAAGTCAATTTACAGTCACTCATGTCATCAAAAACCTT
1 TGAAGCAAAAGCCATCTATTGACAAGAAAAGCCCATTTAGAGTCACTCATGCCCTCAAAAGCCTA
* * * * *
461342 ATTACTTGCTTTATATGATTTTACAATTTATAAATAATTTTAAATCAAAATCTTTTTCATTTTTG
66 ATTACTTACTTTAAATGGTTTTATAATTTATAAATGATTTTAAATCAAAATCTTTTT-ATTTTTG
** ** * * * **
461407 GTTTGAATAGATTACAATTCGATGTTTGCTTTATGA-AATGA
130 GTTCAAACCGATCATAATTCGATGTTTGC-ATA-GAGAAACA
** * * * * * ** * * * * * *
461448 -GAAGTGAAAGCAAACCAATAACAAGAAAAGTTCAATTATAGTCACTCACGCCTTCGAAAGGCTA
1 TGAAGCAAAAGCCATCTATTGACAAGAAAAGCCCATTTAGAGTCACTCATGCCCTCAAAAGCCTA
* * ** * ** * * *
461512 GTTATTTACTTTAAATTATTTTATAATCTTGT-AATGATTTTAAATTGAAATCTTATTGTTTTTA
66 ATTACTTACTTTAAATGGTTTTATAAT-TTATAAATGATTTTAAATCAAAATCTTTTTATTTTTG
** ** * **
461576 GTTCAAACATATCATAATT-GCATGCATGCACTAG-GCAATG
130 GTTCAAACCGATCATAATTCG-ATGTTTGCA-TAGAGAAACA
** * * * ** * *
461616 TGAAGCGGATGCCAT-TGATTGACAAGAAAAGTCCATTTATG-GTCATTCATGCTTTCGAAAGCT
1 TGAAGCAAAAGCCATCT-ATTGACAAGAAAAGCCCATTTA-GAGTCACTCATGCCCTCAAAAGCC
** * *
461679 TTGTTGCTCACTTTAAATGGTTTTATAATTTATAAATGATTTTAAATCAAAATCTTTTT-TGTTT
64 TAATTACTTACTTTAAATGGTTTTATAATTTATAAATGATTTTAAATCAAAATCTTTTTAT-TTT
**
461743 TCGGTT-AAACACGATCATAATTTTATGTTTGCACTAG-GAAACA
128 T-GGTTCAAAC-CGATCATAATTCGATGTTTGCA-TAGAGAAACA
* * * *
461786 TGTAA-CAAAAGCCATCCT-TTTATAAGAAAA-TCCATTTATAGTCACTCATGCCCTCAAAAGCC
1 TG-AAGCAAAAGCCAT-CTATTGACAAGAAAAGCCCATTTAGAGTCACTCATGCCCTCAAAAGCC
** *
461848 TAATTACTTGTTTTAAATGGTTTTATAATCATATAAATGATTTTAAATCAAAATCTTTTTATTTT
64 TAATTACTTACTTTAAATGGTTTTATAAT-TTATAAATGATTTTAAATCAAAATCTTTTTATTTT
* *
461913 TGGTTCAAACCTATCATAATTCGATGTTTGCATTGAGAAACA
128 TGGTTCAAACCGATCATAATTCGATGTTTGCATAGAGAAACA
*** * * * * * *
461955 TGAAGTGGATGCCATCTATTGCCAAGAAAAGCCCATTTAGAGTCACTTATGCCTTCGAAAGCCTT
1 TGAAGCAAAAGCCATCTATTGACAAGAAAAGCCCATTTAGAGTCACTCATGCCCTCAAAAGCCTA
* * * * *
462020 ATTACTTACTTTAAATAGTTTTATAATTTATTAATAATTTTAACTCAAAAATCTTTTTCATTGTT
66 ATTACTTACTTTAAATGGTTTTATAATTTATAAATGATTTTAAATC-AAAATCTTTTT-ATTTTT
* * * * * * * **
462085 AGTTAAAACAGATCATAATTAGATATCTGCATTGAGAAATG
129 GGTTCAAACCGATCATAATTCGATGTTTGCATAGAGAAACA
** * * * ** * * *
462126 TGAAGTGAAAGCCATCAATTTATAAGAAAA-CTTTATTTATAGTCACTCATAG-CTTCAAAAGCT
1 TGAAGCAAAAGCCATCTATTGACAAGAAAAGC-CCATTTAGAGTCACTCAT-GCCCTCAAAAGCC
** ** * ** * **
462189 TTGTTACTCCCTTTAAATAGTTTTGGAATCTTATAAATAATTTTAAATTGAAATCTTTTTCATTT
64 TAATTACTTACTTTAAATGGTTTTATAAT-TTATAAATGATTTTAAATCAAAATCTTTTT-ATTT
*
462254 TGGGTT
127 TTGGTT
462260 AAAGAATATC
Statistics
Matches: 628, Mismatches: 156, Indels: 56
0.75 0.19 0.07
Matches are distributed among these distances:
168 13 0.02
169 232 0.37
170 233 0.37
171 132 0.21
172 18 0.03
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (169 bp):
TGAAGCAAAAGCCATCTATTGACAAGAAAAGCCCATTTAGAGTCACTCATGCCCTCAAAAGCCTA
ATTACTTACTTTAAATGGTTTTATAATTTATAAATGATTTTAAATCAAAATCTTTTTATTTTTGG
TTCAAACCGATCATAATTCGATGTTTGCATAGAGAAACA
Found at i:464768 original size:171 final size:171
Alignment explanation
Indices: 464284--464816 Score: 431
Period size: 171 Copynumber: 3.1 Consensus size: 171
464274 NNNNNNNNNN
* * * * *
464284 ATCTTATAAATGATTTTAAGTCAAAATCTTTT-TCATTTTTAGTT-AAACAAATCA-AATTTGGA
1 ATCTTATAAATGATTTTAAATTAAAAT-TTTTATCATTTTTGGTTCAAACAGATCATAA-TTCGA
* * * * * * * * * * ** *
464346 TGC-TTGGATTAGGAAACATGAAACGGAAGCCATCCATTGACAAGGAAAGCCCATTTATAGTTAA
64 -GCTTTGCATCAGAAAACATGAAGCGAAAGCCATACATTGATAAGAAAAGCCAATTAATAGACAT
* * * * * *
464410 TCATGCCATAC-AAAGCCTAGCTACTCACTTTAAATGGTTTTATA
128 TCATGCC-TTCGAAACCCTAGTTAATAACTTTAAATGATTTTATA
** *
464454 ATCTTATAAATGATTTTAAATTAAAATTTTTATCATTTTTGGTTCAAACCTATCATAATTCGATC
1 ATCTTATAAATGATTTTAAATTAAAATTTTTATCATTTTTGGTTCAAACAGATCATAATTCGAGC
* * * ** *
464519 TTTGCGTCAGAAAACGTGAAGCGAATGCCATACATTGATAAGAAAAGTTAATTTATAGACATTCA
66 TTTGCATCAGAAAACATGAAGCGAAAGCCATACATTGATAAGAAAAGCCAATTAATAGACATTCA
* * **
464584 TGCCTTGGAAACCCTTA-TTAGTTGCTTTAAATGATTTTATA
131 TGCCTTCGAAACCC-TAGTTAATAACTTTAAATGATTTTATA
* ** * * * * *
464625 ATCTTGTAAATGATTTTAAATTAAAATCTTTT-TTGTTTTTGGTTGAAACAGATTATATTTTGCG
1 ATCTTATAAATGATTTTAAATTAAAAT-TTTTATCATTTTTGGTTCAAACAGATCATAATTCGAG
* * * * * * *
464689 GTTTGCATTAGGAAACATGAAG-GAAAAGCCATCCATTGATAAGAAAAGCCCATTAATCGTCACT
65 CTTTGCATCAGAAAACATGAAGCG-AAAGCCATACATTGATAAGAAAAGCCAATTAATAGACA-T
464753 T-ATG-CTATCGAAACCCTAGTTAATAACTTTAAATGGA-TTTATA
128 TCATGCCT-TCGAAACCCTAGTTAATAACTTTAAAT-GATTTTATA
464796 ATCTTATAAATGATTTTAAAT
1 ATCTTATAAATGATTTTAAAT
464817 CTTAAAGTTT
Statistics
Matches: 290, Mismatches: 61, Indels: 23
0.78 0.16 0.06
Matches are distributed among these distances:
169 4 0.01
170 43 0.15
171 231 0.80
172 12 0.04
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.37
Consensus pattern (171 bp):
ATCTTATAAATGATTTTAAATTAAAATTTTTATCATTTTTGGTTCAAACAGATCATAATTCGAGC
TTTGCATCAGAAAACATGAAGCGAAAGCCATACATTGATAAGAAAAGCCAATTAATAGACATTCA
TGCCTTCGAAACCCTAGTTAATAACTTTAAATGATTTTATA
Found at i:464866 original size:171 final size:167
Alignment explanation
Indices: 464344--464877 Score: 418
Period size: 171 Copynumber: 3.1 Consensus size: 167
464334 ATCAAATTTG
* * * *
464344 GATGCTTGGATTAGGAAACATGAAACGG-AAGCCATCCATTGACAAGGAAAGCCCATTTATAGTT
1 GATGTTTGCATTAGGAAACATG-AA-GGAAAGCCATCCATTGATAAGAAAAGCCCATTTATAG-T
* * * * * * * *
464408 AATCATGCCATAC-AAAGCCTAGCTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTA
63 CATTATGCTAT-CGAAACCCTAGTTAATAACTTTAAATGGATTTATAATCTTATAAATGATTTTA
* * *
464472 AA-TTAAAATTTTTATCATTTTTGGTTCAAACCT-ATCATAATTC
127 AATTTAAAA--TTTATC-TTTTTGGTT-AAAACTGATTATAATTA
* * * * * * * *** *
464515 GATCTTTGCGTCAGAAAACGTGAAGCGAATGCCATACATTGATAAGAAAAGTTAATTTATAGACA
1 GATGTTTGCATTAGGAAACATGAAG-GAAAGCCATCCATTGATAAGAAAAGCCCATTTATAGTCA
* * ** *
464580 TTCATGCCT-TGGAAACCCTTA-TTAGTTGCTTTAAAT-GATTTTATAATCTTGTAAATGATTTT
65 TT-ATG-CTATCGAAACCC-TAGTTAATAACTTTAAATGGA-TTTATAATCTTATAAATGATTTT
* * * * * *
464642 AAA-TTAAAATCTTTTTTGTTTTTGGTTGAAACAGATTATATTTT
126 AAATTTAAAA---TTTATCTTTTTGGTTAAAACTGATTATAATTA
** * *
464686 GCGGTTTGCATTAGGAAACATGAAGGAAAAGCCATCCATTGATAAGAAAAGCCCATTAATCGTCA
1 GATGTTTGCATTAGGAAACATGAAGG-AAAGCCATCCATTGATAAGAAAAGCCCATTTATAGTCA
464751 CTTATGCTATCGAAACCCTAGTTAATAACTTTAAATGGATTTATAATCTTATAAATGATTTTAAA
65 -TTATGCTATCGAAACCCTAGTTAATAACTTTAAATGGATTTATAATCTTATAAATGATTTTAAA
* * * *
464816 TCTTAAAGTTTCTCTTTCTTGGTTAAAATTGATTATAACTA
129 T-TTAAAATTTATCTTT-TTGGTTAAAACTGATTATAATTA
*
464857 GATGTTTGCATTGGGAAACAT
1 GATGTTTGCATTAGGAAACAT
464878 TATAACGACC
Statistics
Matches: 279, Mismatches: 67, Indels: 34
0.73 0.18 0.09
Matches are distributed among these distances:
169 1 0.00
170 21 0.08
171 240 0.86
172 12 0.04
173 5 0.02
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.37
Consensus pattern (167 bp):
GATGTTTGCATTAGGAAACATGAAGGAAAGCCATCCATTGATAAGAAAAGCCCATTTATAGTCAT
TATGCTATCGAAACCCTAGTTAATAACTTTAAATGGATTTATAATCTTATAAATGATTTTAAATT
TAAAATTTATCTTTTTGGTTAAAACTGATTATAATTA
Found at i:471408 original size:29 final size:29
Alignment explanation
Indices: 471369--471426 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
471359 AAGTCATAAG
* *
471369 GGTTTCTAAGGCATGAATGTCTATAAATT
1 GGTTTCCAAGGCAAGAATGTCTATAAATT
*
471398 GGTTTCCAAGGTAAGAATGTCTATAAATT
1 GGTTTCCAAGGCAAGAATGTCTATAAATT
471427 AACTTTTCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (29 bp):
GGTTTCCAAGGCAAGAATGTCTATAAATT
Found at i:475328 original size:169 final size:170
Alignment explanation
Indices: 475071--475675 Score: 534
Period size: 169 Copynumber: 3.6 Consensus size: 170
475061 AAAGCCATTT
* * * * *
475071 ATTGACAAAAAAATTGC-ATTTATATTCACTCTTGCCTTCAAAAGCCTTGTTACTCACTTTAAAT
1 ATTGACAAGAAAAGT-CTATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAAT
* * * * *
475135 GGTTTTATAATCATAAAAATGATTTTAAATCGAAATCTTTTTTGATTTTGGTTATAATAGATCAT
65 GGTTTTATAATCTTATAAATGATTTTAAATCGAAATCTTTTTTGATTTTAGTTA-AACAAATCAT
* * * * *
475200 GTTTGGATGTTTGCA-T-GGAAACATGAAGTGGATGCCATCC
129 ATTTGCATGTTTGCATTGGGAAACATGAAGTAGAAGCAATCC
* ** *
475240 ATTGACAAGAAAAGTCTATTTATAGCCACTCATGCCTTCGAAAGAGTTGTTACACACTTTAAATG
1 ATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATG
* * * *
475305 TTTTTATAATCTTATAAATGATTTTAAATTGAAAT-TGTTTTTGTTTTTAGTTAAACAAATCCTA
66 GTTTTATAATCTTATAAATGATTTTAAATCGAAATCT-TTTTTGATTTTAGTTAAACAAATCATA
* * *
475369 TTTGCATTTTTGCATTGGGAAACATGAAGTAGAAGTAATTC
130 TTTGCATGTTTGCATTGGGAAACATGAAGTAGAAGCAATCC
* * * * * *
475410 ATTGACAAGAAAAGTCTACTTAAAGTTACTCATGTCTTCGAAAGCTTTGTTACTCGCTTTAAATG
1 ATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATG
* * * * * * **
475475 GTTTTATAATTTTATAAAT-AATTTAAAGTCAAAATC--CTTT--TTTTGGTTCAAATC-TATTT
66 GTTTTATAATCTTATAAATGATTTTAAA-TCGAAATCTTTTTTGATTTTAGTT-AAA-CAAATCA
* * * * * ***
475534 TAATTGGATGCTAGCATTGAGAAACATGAAACGGACAGTC--TCC
128 TATTTGCATGTTTGCATTGGGAAACATGAAGTAGA-AG-CAATCC
* * * * *
475577 ATTGGCAAGTAAAGTC-ATTTTATAGTCACTCATGACTTTGAAAGCCTTGTTACTTACTTTAAAT
1 ATTGACAAGAAAAGTCTA-TTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAAT
* * *
475641 GGTTTAATAATCCTATAAATGATTTTAAATTGAAA
65 GGTTTTATAATCTTATAAATGATTTTAAATCGAAA
475676 NNNNNNNNNN
Statistics
Matches: 352, Mismatches: 72, Indels: 26
0.78 0.16 0.06
Matches are distributed among these distances:
166 8 0.02
167 106 0.30
168 34 0.10
169 107 0.30
170 97 0.28
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.39
Consensus pattern (170 bp):
ATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATG
GTTTTATAATCTTATAAATGATTTTAAATCGAAATCTTTTTTGATTTTAGTTAAACAAATCATAT
TTGCATGTTTGCATTGGGAAACATGAAGTAGAAGCAATCC
Found at i:475451 original size:170 final size:169
Alignment explanation
Indices: 475097--475517 Score: 479
Period size: 170 Copynumber: 2.5 Consensus size: 169
475087 CATTTATATT
* * ** * *
475097 CACTCTTGCCTTCAAAAGCCTTGTTACTCACTTTAAATGGTTTTATAATCATAAAAATGATTTTA
1 CACTCATGCCTTCGAAAGAGTTGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTA
* * * * *
475162 AATCGAAATCTTTTTTGATTTTGGTTATAATAGATCATGTTTGGATGTTTGCATGGAAACATGAA
66 AATCGAAATCTTTTTTGATTTTAGTTATAACAAATCATATTTGCATGTTTGCATGGAAACATGAA
* * * * *
475227 GTGGATGCCATCCATTGACAAGAAAAGTCTATTTATAGC
131 GTAGAAGCAATCCATTGACAAGAAAAGTCTACTTAAAGC
* *
475266 CACTCATGCCTTCGAAAGAGTTGTTACACACTTTAAATGTTTTTATAATCTTATAAATGATTTTA
1 CACTCATGCCTTCGAAAGAGTTGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTA
* * * *
475331 AATTGAAAT-TGTTTTTGTTTTTAGTTA-AACAAATCCTATTTGCATTTTTGCATTGGGAAACAT
66 AATCGAAATCT-TTTTTGATTTTAGTTATAACAAATCATATTTGCATGTTTGCA-T-GGAAACAT
* * *
475394 GAAGTAGAAGTAATTCATTGACAAGAAAAGTCTACTTAAAGT
128 GAAGTAGAAGCAATCCATTGACAAGAAAAGTCTACTTAAAGC
* * ** * * *
475436 TACTCATGTCTTCGAAAGCTTTGTTACTCGCTTTAAATGGTTTTATAATTTTATAAAT-AATTTA
1 CACTCATGCCTTCGAAAGAGTTGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTA
*
475500 AAGTCAAAATCCTTTTTT
66 AA-TCGAAAT-CTTTTTT
475518 TGGTTCAAAT
Statistics
Matches: 210, Mismatches: 36, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
168 20 0.10
169 87 0.41
170 97 0.46
171 5 0.02
172 1 0.00
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.40
Consensus pattern (169 bp):
CACTCATGCCTTCGAAAGAGTTGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTA
AATCGAAATCTTTTTTGATTTTAGTTATAACAAATCATATTTGCATGTTTGCATGGAAACATGAA
GTAGAAGCAATCCATTGACAAGAAAAGTCTACTTAAAGC
Found at i:521374 original size:16 final size:16
Alignment explanation
Indices: 521353--521383 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
521343 TAATAGTAAT
*
521353 TTATTTATTTTATTTA
1 TTATTTATTATATTTA
521369 TTATTTATTATATTT
1 TTATTTATTATATTT
521384 TCTTATTTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
TTATTTATTATATTTA
Found at i:521389 original size:20 final size:20
Alignment explanation
Indices: 521351--521390 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
521341 TTTAATAGTA
*
521351 ATTTATTTATTTTATTTATT
1 ATTTATTTATTTTACTTATT
521371 ATTTATTATATTTT-CTTATT
1 ATTTATT-TATTTTACTTATT
521391 TGGGATCCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (20 bp):
ATTTATTTATTTTACTTATT
Found at i:528130 original size:16 final size:16
Alignment explanation
Indices: 528109--528139 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
528099 TTATAGTAAT
*
528109 TTATTTATTTTATTTA
1 TTATTTATTATATTTA
528125 TTATTTATTATATTT
1 TTATTTATTATATTT
528140 TTNNNNNNNN
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
TTATTTATTATATTTA
Found at i:543213 original size:16 final size:16
Alignment explanation
Indices: 543192--543222 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
543182 TAATTGTAAT
*
543192 TTATTTATTTTATTTA
1 TTATTTATTATATTTA
543208 TTATTTATTATATTT
1 TTATTTATTATATTT
543223 TTTTATTTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
TTATTTATTATATTTA
Found at i:543213 original size:20 final size:20
Alignment explanation
Indices: 543190--543229 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
543180 TTTAATTGTA
543190 ATTTATT-TATTTTATTTATT
1 ATTTATTATATTTT-TTTATT
543210 ATTTATTATATTTTTTTATT
1 ATTTATTATATTTTTTTATT
543230 TGGGATCCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (20 bp):
ATTTATTATATTTTTTTATT
Found at i:550314 original size:3 final size:3
Alignment explanation
Indices: 550301--550352 Score: 61
Period size: 3 Copynumber: 16.7 Consensus size: 3
550291 TTTTTGACTA
*
550301 ATT ATT A-T ATT ATTT ATAC ATTT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT A-TT AT-T AT-T ATT ATT ATT ATT ATT ATT ATT ATT
550348 ATT AT
1 ATT AT
550353 CGAGACTCAA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
2 2 0.05
3 34 0.79
4 7 0.16
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:591000 original size:18 final size:18
Alignment explanation
Indices: 590977--591018 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
590967 CTAACTATTA
590977 TATTATTTATATATTTAT
1 TATTATTTATATATTTAT
* *
590995 TATTATTTTTATTTTTAT
1 TATTATTTATATATTTAT
591013 TATTAT
1 TATTAT
591019 CNNNNNNNNN
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
TATTATTTATATATTTAT
Found at i:600286 original size:20 final size:19
Alignment explanation
Indices: 600254--600291 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
600244 TTTTACTTGC
600254 TTTAAATAGTTTTATAATCT
1 TTTAAATAGTTTTA-AATCT
600274 TTTAAAT-GTTTTTAAATC
1 TTTAAATAG-TTTTAAATC
600292 AAANNNNNNN
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.55
Consensus pattern (19 bp):
TTTAAATAGTTTTAAATCT
Found at i:620250 original size:20 final size:19
Alignment explanation
Indices: 620217--620255 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
620207 TTTTTACTTG
620217 TTTTAAATAGTTTTATAATC
1 TTTTAAATAGTTTTA-AATC
620237 TTTTAAAT-GTTTTTAAATC
1 TTTTAAATAG-TTTTAAATC
620256 AAAATATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.56
Consensus pattern (19 bp):
TTTTAAATAGTTTTAAATC
Found at i:645093 original size:172 final size:172
Alignment explanation
Indices: 644894--645207 Score: 409
Period size: 172 Copynumber: 1.8 Consensus size: 172
644884 NNNNNNNNNT
* * * * *
644894 TTCGATTTAAAATCATTTATAAGATTATAAAGCCATTTAAAGTGAGCAATAAGGATTTCGAAGAC
1 TTCGATTTAAAATCACTTATAAGATTATAAAACCATTTAAACTAAGCAATAAGGATTTCCAAGAC
*
644959 ATG-AGCAAATATAAAGGGACTTTTCTTT-TCAATGGATGGCATCTACTTCATATTTCCCAATGC
66 ATGAAG-AAATATAAAGGGA-TTTTCTTTGTCAATGGATGGCATCTACTTCACATTTCCCAATGC
*
645022 GAACATTC-AATTATGATAGGTTTGAACCAAAAACAAAAAAAGAC
129 AAACA-TCAAATTATGATAGGTTTGAACCAAAAACAAAAAAAGAC
* * * *
645066 TTCGATTTAAAATCACTTATAAGATTATAAAACCATTTAAACTAAGTAATTAGGCTTTCCAAGGC
1 TTCGATTTAAAATCACTTATAAGATTATAAAACCATTTAAACTAAGCAATAAGGATTTCCAAGAC
* * * * * * * *
645131 ATGAAGTACTATAAATGGATTTTTTTTGTCAATGGATGGCTTTTACTTCACGTTTCTCAATGCAA
66 ATGAAGAAATATAAAGGGATTTTCTTTGTCAATGGATGGCATCTACTTCACATTTCCCAATGCAA
645196 ACATCAAATTAT
131 ACATCAAATTAT
645208 NNNNNNNNNN
Statistics
Matches: 120, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
171 9 0.08
172 109 0.91
173 2 0.02
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (172 bp):
TTCGATTTAAAATCACTTATAAGATTATAAAACCATTTAAACTAAGCAATAAGGATTTCCAAGAC
ATGAAGAAATATAAAGGGATTTTCTTTGTCAATGGATGGCATCTACTTCACATTTCCCAATGCAA
ACATCAAATTATGATAGGTTTGAACCAAAAACAAAAAAAGAC
Found at i:659260 original size:80 final size:79
Alignment explanation
Indices: 659167--659313 Score: 197
Period size: 80 Copynumber: 1.8 Consensus size: 79
659157 TTAAAATTAT
* * * * *
659167 TTATAAATTATAAAACCGTTTAAAGAGAGTAGCAAGGGTTTCA-ATGGCATGAGTGGCTATAAAT
1 TTATAAATTATAAAACCGTTGAAAGAGAGTAACAAGGCTTTCACAT-GAATGAGTGACTATAAAT
659231 AGATTTTCAAAACCA
65 AGATTTTCAAAACCA
* * *
659246 TTATAAGATTATAAAATCGTTGAAAGCGAGTAACAAGGCTTTTACATGAATGAGTGACTATAAAT
1 TTATAA-ATTATAAAACCGTTGAAAGAGAGTAACAAGGCTTTCACATGAATGAGTGACTATAAAT
659311 AGA
65 AGA
659314 CATTTCGTGT
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
79 6 0.10
80 50 0.86
81 2 0.03
ACGTcount: A:0.41, C:0.10, G:0.19, T:0.29
Consensus pattern (79 bp):
TTATAAATTATAAAACCGTTGAAAGAGAGTAACAAGGCTTTCACATGAATGAGTGACTATAAATA
GATTTTCAAAACCA
Found at i:662536 original size:169 final size:171
Alignment explanation
Indices: 662142--662538 Score: 411
Period size: 171 Copynumber: 2.3 Consensus size: 171
662132 TTAAAAGAAG
* * * * * *
662142 TAACTAGGCTTTCATTGTCATGAGTGACTAAAAATGTTCTTTTATTGTCAATGGATGGTATGAGC
1 TAACTAGGCTTTTAATGACATGAGTGACTAAAAATGTACTTTTCTTGTCAATGGATGATATGAGC
* *** * *
662207 TTCTTGTTTCTTGATGCAAACATCCAATTATAATCGATTTTAACAAAAAATAAAATAAATTTTGA
66 TTCATGTTTCCCAATGCAAACATCCAATTATAATAGATTTGAACAAAAAATAAAATAAATTTTGA
* * * *
662272 TTTAAAATCATTTATAAGGTTGTAAAACCATTCAAAGCTAG
131 TTTAAAATCATTTATAAGATTATAAAACCATTCAAAGCAAA
* * * * * ** * * * * **
662313 TGACAAGGCTTTCAAAGGCATGAGCAACTACAAAGGAACTTTTCTTTTCAATGGATGATATTTGC
1 TAACTAGGCTTTTAATGACATGAGTGACTAAAAATGTACTTTTCTTGTCAATGGATGATATGAGC
* * * * * * *
662378 TTCATGTTTCCCAATGCGAACATCTAATTATGATAGGTTTGAACCAGAAATAAAA-AGATTTTGA
66 TTCATGTTTCCCAATGCAAACATCCAATTATAATAGATTTGAACAAAAAATAAAATAAATTTTGA
* * *
662442 TTTAAAATTATTTATAAGATTATAAAATCATT-TAAGCAAA
131 TTTAAAATCATTTATAAGATTATAAAACCATTCAAAGCAAA
* *
662482 TAACTAGGCTTTTGATGACATGAGTGACTATAAATGTACTTTTCTTGTCAATGGATG
1 TAACTAGGCTTTTAATGACATGAGTGACTAAAAATGTACTTTTCTTGTCAATGGATG
662539 GCTTTCGTTT
Statistics
Matches: 178, Mismatches: 48, Indels: 2
0.78 0.21 0.01
Matches are distributed among these distances:
169 50 0.28
170 36 0.20
171 92 0.52
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (171 bp):
TAACTAGGCTTTTAATGACATGAGTGACTAAAAATGTACTTTTCTTGTCAATGGATGATATGAGC
TTCATGTTTCCCAATGCAAACATCCAATTATAATAGATTTGAACAAAAAATAAAATAAATTTTGA
TTTAAAATCATTTATAAGATTATAAAACCATTCAAAGCAAA
Found at i:662578 original size:169 final size:170
Alignment explanation
Indices: 662142--662610 Score: 467
Period size: 169 Copynumber: 2.8 Consensus size: 170
662132 TTAAAAGAAG
* * * * * *
662142 TAACTAGGCTTTCATTGTCATGAGTGACTAAAAATGTTCTTTTATTGTCAATGGATGGTATGAGC
1 TAACTAGGCTTTTAATGACATGAGTGACTAAAAATGTACTTTTCTTGTCAATGGATGGTATTAGC
* * * * * *
662207 TTCTTGTTTCTTGATGCAAACATCCAATTATAATCGATTTTAACAAAAAATAAAATAAATTTTGA
66 TTCTTGTTCCTTGATGCAAACATCCAATTATGATCGGTTTGAACCAAAAATAAAA-AGATTTTGA
* * * *
662272 TTTAAAATCATTTATAAGGTTGTAAAACCATTCAAAGCTAG
130 TTTAAAATCATTTATAAGATTATAAAACCATTCAAAGCAAA
* * * * * ** * * * * * *
662313 TGACAAGGCTTTCAAAGGCATGAGCAACTACAAAGGAACTTTTCTTTTCAATGGATGATATTTGC
1 TAACTAGGCTTTTAATGACATGAGTGACTAAAAATGTACTTTTCTTGTCAATGGATGGTATTAGC
* ** * * * *
662378 TTCATGTTTCC-CAATGCGAACATCTAATTATGATAGGTTTGAACCAGAAATAAAAAGATTTTGA
66 TTCTTG-TTCCTTGATGCAAACATCCAATTATGATCGGTTTGAACCAAAAATAAAAAGATTTTGA
* * *
662442 TTTAAAATTATTTATAAGATTATAAAATCATT-TAAGCAAA
130 TTTAAAATCATTTATAAGATTATAAAACCATTCAAAGCAAA
* * *
662482 TAACTAGGCTTTTGATGACATGAGTGACTATAAATGTACTTTTCTTGTCAATGGATGGCT-TTCG
1 TAACTAGGCTTTTAATGACATGAGTGACTAAAAATGTACTTTTCTTGTCAATGGATGG-TATTAG
* * * * *
662546 TTTCTTGTTCCTTGATTCAAATATCCAATTATGATCTGTTTGAACCAAAAACAAAAAGATTTTGA
65 CTTCTTGTTCCTTGATGCAAACATCCAATTATGATCGGTTTGAACCAAAAATAAAAAGATTTTGA
662611 AATTATAAAA
Statistics
Matches: 233, Mismatches: 62, Indels: 8
0.77 0.20 0.03
Matches are distributed among these distances:
168 4 0.02
169 101 0.43
170 37 0.16
171 88 0.38
172 3 0.01
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.36
Consensus pattern (170 bp):
TAACTAGGCTTTTAATGACATGAGTGACTAAAAATGTACTTTTCTTGTCAATGGATGGTATTAGC
TTCTTGTTCCTTGATGCAAACATCCAATTATGATCGGTTTGAACCAAAAATAAAAAGATTTTGAT
TTAAAATCATTTATAAGATTATAAAACCATTCAAAGCAAA
Found at i:670888 original size:85 final size:84
Alignment explanation
Indices: 670727--670899 Score: 222
Period size: 85 Copynumber: 2.0 Consensus size: 84
670717 ACCAAAAATG
* * *
670727 AAATAAATTTTAATTTAAAATCATATATAAATTATAAAACTATCTAAAGAAAGTAAAAAGGGTTT
1 AAATAAATTTTAATTCAAAACCATATATAAATTACAAAACTATCTAAAGAAAGTAAAAAGGGTTT
* * * *
670792 GAATGGCATGAGTGACTAT
66 CAATAGAATGAGTAACTAT
* * * *
670811 AAATAGATTTTAATTCAAAACCATATATAAGATTACAAAACTATTTAAAGCAAGTAACAAGGGTT
1 AAATAAATTTTAATTCAAAACCATATATAA-ATTACAAAACTATCTAAAGAAAGTAAAAAGGGTT
670876 TCACA-AGAATGAGTAACTAT
65 TCA-ATAGAATGAGTAACTAT
670896 AAAT
1 AAAT
670900 TGACTTTTNN
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
84 27 0.36
85 48 0.63
86 1 0.01
ACGTcount: A:0.49, C:0.09, G:0.12, T:0.30
Consensus pattern (84 bp):
AAATAAATTTTAATTCAAAACCATATATAAATTACAAAACTATCTAAAGAAAGTAAAAAGGGTTT
CAATAGAATGAGTAACTAT
Found at i:695087 original size:171 final size:172
Alignment explanation
Indices: 694722--695117 Score: 397
Period size: 171 Copynumber: 2.3 Consensus size: 172
694712 NNNNNNNNNN
*
694722 ACATCTAATTATGATTGATTTTAACTAAAAAT-GAAAAATATTTCAATTTAAAATCATTTAAAAA
1 ACATCTAATTATGATTGATTTTAACCAAAAATAGAAAAATATTTCAATTTAAAATCATTTAAAAA
* *** ** * * *
694786 ATTATAAAACAATTTAAAGTGAGTAATAATGCCTTTAAAGGCATGAGTGCCTGTAAATAAACTTT
66 ATTACAAAACAATTTAAAACAAAAAACAAAGCCTTTAAAGGCATGAGTGACTGTAAATAAACTTT
* * ** ** * *
694851 TTTTATCAATGGATGGCTTTTGCTTTACGTTTCTCAATGTAA
131 TTTGATCAATGGATGGCATCCGCTCAACATTTCTCAATGGAA
* * ** * * * *
694893 ATATCTAAATATGATCAATTTTAA-GAAAAATAGAAAAATATTTCAATTTAAAATGATTTATAAG
1 ACATCTAATTATGATTGATTTTAACCAAAAATAGAAAAATATTTCAATTTAAAATCATTTAAAAA
* * * **
694957 ATTACAAAACTATTTAAAACAAAAAACAAAGCTTTTGAAA-GCATTAGTGACTGTAAATGGACTT
66 ATTACAAAACAATTTAAAACAAAAAACAAAGCCTTT-AAAGGCATGAGTGACTGTAAATAAACTT
* * * *
695021 TTTTGATCAATGGGTGGCATCCGCTCAATATTTCTTATTGGAA
130 TTTTGATCAATGGATGGCATCCGCTCAACATTTCTCAATGGAA
* * *
695064 GCATCCAATTATGATTGATTTTAACCAAAAATAGAAAAGAT-TTT-GATTTAAAAT
1 ACATCTAATTATGATTGATTTTAACCAAAAATAGAAAA-ATATTTCAATTTAAAAT
695118 TANNNNNNNN
Statistics
Matches: 179, Mismatches: 42, Indels: 8
0.78 0.18 0.03
Matches are distributed among these distances:
170 6 0.03
171 153 0.85
172 18 0.10
173 2 0.01
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.36
Consensus pattern (172 bp):
ACATCTAATTATGATTGATTTTAACCAAAAATAGAAAAATATTTCAATTTAAAATCATTTAAAAA
ATTACAAAACAATTTAAAACAAAAAACAAAGCCTTTAAAGGCATGAGTGACTGTAAATAAACTTT
TTTGATCAATGGATGGCATCCGCTCAACATTTCTCAATGGAA
Found at i:696967 original size:168 final size:170
Alignment explanation
Indices: 696659--696971 Score: 377
Period size: 168 Copynumber: 1.9 Consensus size: 170
696649 NNNNNNNNTT
* *
696659 AAAATCATTAATAGGATTATAAAACCAATTAAAGCGACTAACCAGGATTTCGATGGCATGAGTGA
1 AAAATCATTAATAGGATTATAAAACCAATTAAAGCGACTAACAAGGATTTCAATGGCATGAGTGA
* * * * * *
696724 CTATAAATGGACTTTTCTTATCAATGCATGGCTTATGTTTCATGTTTCTCATGCAAGCATTAAAT
66 CTATAAATGGACTTTTCTTATCAATCCATGGCATACGTTTCATGTTTCTAATGCAAACATCAAAT
* *
696789 TTTGATATGTTTTAACCAAGAATGGAATAAATTTTTATTC
131 TCTAATATGTTTTAACCAAGAATGGAATAAATTTTTATTC
* * * * * *
696829 AAAATCATTTATA-TATTAT-AAACCATTTAAAGCGAGTAACAAGGGTTTCAATGAG-TTGAGTG
1 AAAATCATTAATAGGATTATAAAACCAATTAAAGCGACTAACAAGGATTTCAATG-GCATGAGTG
* * *
696891 ACTATAAATTGACTTTTCTTGTC-A-CCAATGGCATCCGTTTCATGTTTCCTAATGCAAACATCC
65 ACTATAAATGGACTTTTCTTATCAATCC-ATGGCATACGTTTCATGTTT-CTAATGCAAACAT-C
696954 AAA-TCTAATATGTTTTAA
127 AAATTCTAATATGTTTTAA
696972 TAAAAAATAA
Statistics
Matches: 120, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
166 1 0.01
167 18 0.15
168 80 0.67
169 9 0.08
170 12 0.10
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (170 bp):
AAAATCATTAATAGGATTATAAAACCAATTAAAGCGACTAACAAGGATTTCAATGGCATGAGTGA
CTATAAATGGACTTTTCTTATCAATCCATGGCATACGTTTCATGTTTCTAATGCAAACATCAAAT
TCTAATATGTTTTAACCAAGAATGGAATAAATTTTTATTC
Found at i:720510 original size:170 final size:170
Alignment explanation
Indices: 720278--720654 Score: 388
Period size: 170 Copynumber: 2.2 Consensus size: 170
720268 AACGATTTTT
* * * * * *
720278 ATTTAAAATCATTTATAAATTATATAGCCATTTAAAGCAAATAATAAAGGTTTTGGTGGCATGAA
1 ATTTAAAATCATTTATAAATTATAAAACCATTTAAAGCAAATAATAAAGCTGTCGATGGCATGAA
* * *
720343 TGACTATGAA-TGAACTT-TTCTTGTCAATGGATGGCATCCGCTTCGTGTTTCCCAATACAAACA
66 TGACTAT-AATTGAACTTCTT-TTGTCAATGGATGACATCCGCTTCATATTTCCCAATACAAACA
*
720406 TCCAAATATGATTAGTTTTAACAAAAAATGAAAA-A-AATTCA
129 TCCAAATATAATTAGTTTTAACAAAAAAT-AAAAGATAATTCA
* *
720447 ATTTAAAATCATTTATAAGATTATAAAACCATTTCAAGCAAGTAAT-AAGCTCGTCGATGGCATG
1 ATTTAAAATCATTTATAA-ATTATAAAACCATTTAAAGCAAATAATAAAGCT-GTCGATGGCATG
* * * * ** * * ** *
720511 AGTTACTATAATTGGAGTTCTTTTGTCTGTGGATGACATCTGGTTCATATTTCCTTATGCAAACA
64 AATGACTATAATTGAACTTCTTTTGTCAATGGATGACATCCGCTTCATATTTCCCAATACAAACA
* * * **
720576 TCCAAATATAATTTGTTTTAACCAAAAATAAAAGATATTTTG
129 TCCAAATATAATTAGTTTTAACAAAAAATAAAAGATAATTCA
* *
720618 ATTTAAAATTATTTTTAAATTTATAAAACCA-TTAAAG
1 ATTTAAAATCATTTATAAA-TTATAAAACCATTTAAAG
720655 TGAGTAACAA
Statistics
Matches: 170, Mismatches: 31, Indels: 13
0.79 0.14 0.06
Matches are distributed among these distances:
169 28 0.16
170 110 0.65
171 32 0.19
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.36
Consensus pattern (170 bp):
ATTTAAAATCATTTATAAATTATAAAACCATTTAAAGCAAATAATAAAGCTGTCGATGGCATGAA
TGACTATAATTGAACTTCTTTTGTCAATGGATGACATCCGCTTCATATTTCCCAATACAAACATC
CAAATATAATTAGTTTTAACAAAAAATAAAAGATAATTCA
Found at i:721332 original size:20 final size:20
Alignment explanation
Indices: 721307--721352 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
721297 CAAACATAAT
721307 CATATATGTTTATATAAATA
1 CATATATGTTTATATAAATA
721327 CATATATGTTTATATAAATA
1 CATATATGTTTATATAAATA
721347 CATATA
1 CATATA
721353 CAAAATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.46, C:0.07, G:0.04, T:0.43
Consensus pattern (20 bp):
CATATATGTTTATATAAATA
Done.